RNA–Protein interactions for RNA: ENST00000472807.1

CHEK2-223, Transcript of checkpoint kinase 2, human

TSL 2

Gene CHEK2, Length 514 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHEK2-223	ENST00000472807	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.77	□□□□□ -0.53
CHEK2-223	ENST00000472807	COL11A2	P13942	1736 aa	Predicted RBP	11.77	□□□□□ -0.53
CHEK2-223	ENST00000472807	SBF1	O95248	1867 aa		11.76	□□□□□ -0.53
CHEK2-223	ENST00000472807	RGL2	O15211	777 aa		11.76	□□□□□ -0.53
CHEK2-223	ENST00000472807	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.76	□□□□□ -0.53
CHEK2-223	ENST00000472807	THUMPD2	Q9BTF0	503 aa	Known RBP	11.76	□□□□□ -0.53
CHEK2-223	ENST00000472807	NBPF26	B4DH59	902 aa		11.75	□□□□□ -0.53
CHEK2-223	ENST00000472807	KIF3C	O14782	793 aa		11.75	□□□□□ -0.53
CHEK2-223	ENST00000472807	RASSF7	Q02833	373 aa		11.75	□□□□□ -0.53
CHEK2-223	ENST00000472807	LMOD3	Q0VAK6	560 aa		11.75	□□□□□ -0.53
CHEK2-223	ENST00000472807	NBPF10	Q6P3W6	841 aa	Known RBP	11.75	□□□□□ -0.53
CHEK2-223	ENST00000472807	CCDC24	Q8N4L8	307 aa		11.75	□□□□□ -0.53
CHEK2-223	ENST00000472807	NBPF15	Q8N660	670 aa		11.75	□□□□□ -0.53
CHEK2-223	ENST00000472807	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.75	□□□□□ -0.53
CHEK2-223	ENST00000472807	KDM2B	Q8NHM5	1336 aa		11.75	□□□□□ -0.53
CHEK2-223	ENST00000472807	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.75	□□□□□ -0.53
CHEK2-223	ENST00000472807	LMNB1	P20700	586 aa		11.74	□□□□□ -0.53
CHEK2-223	ENST00000472807	RIPK4	P57078	832 aa		11.74	□□□□□ -0.53
CHEK2-223	ENST00000472807	EIF4A1	P60842	406 aa	Known RBP	11.74	□□□□□ -0.53
CHEK2-223	ENST00000472807	TSPYL4	Q9UJ04	414 aa		11.74	□□□□□ -0.53
CHEK2-223	ENST00000472807	HSPA6	P17066	643 aa		11.73	□□□□□ -0.53
CHEK2-223	ENST00000472807	WDR43	Q15061	677 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
CHEK2-223	ENST00000472807	KIF6	Q6ZMV9	814 aa		11.73	□□□□□ -0.53
CHEK2-223	ENST00000472807	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.73	□□□□□ -0.53
CHEK2-223	ENST00000472807	NMRK2	Q9NPI5	230 aa		11.73	□□□□□ -0.53
CHEK2-223	ENST00000472807	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
CHEK2-223	ENST00000472807	ARFGEF2	Q9Y6D5	1785 aa		11.72	□□□□□ -0.53
CHEK2-223	ENST00000472807	TIAM2	Q8IVF5	1701 aa		11.72	□□□□□ -0.53
CHEK2-223	ENST00000472807	TOMM70	O94826	608 aa		11.72	□□□□□ -0.53
CHEK2-223	ENST00000472807	KCNA4	P22459	653 aa		11.72	□□□□□ -0.53
CHEK2-223	ENST00000472807	STYK1	Q6J9G0	422 aa		11.72	□□□□□ -0.53
CHEK2-223	ENST00000472807	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.72	□□□□□ -0.53
CHEK2-223	ENST00000472807	CNKSR1	Q969H4	720 aa		11.72	□□□□□ -0.53
CHEK2-223	ENST00000472807	MASTL	Q96GX5	879 aa		11.72	□□□□□ -0.53
CHEK2-223	ENST00000472807	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.72	□□□□□ -0.53
CHEK2-223	ENST00000472807	CACNA1S	Q13698	1873 aa		11.72	□□□□□ -0.53
CHEK2-223	ENST00000472807	ERBB4	Q15303	1308 aa		11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	NFKBIE	O00221	500 aa		11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	C21orf2	O43822	256 aa		11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	SRGN	P10124	158 aa		11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	MYL6B	P14649	208 aa		11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	TMPO	P42166	694 aa	Known RBP	11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	SOGA3	Q5TF21	947 aa		11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	PRPF40B	Q6NWY9	871 aa	Known RBP	11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	TPTE2	Q6XPS3	522 aa		11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	NGEF	Q8N5V2	710 aa		11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	BABAM1	Q9NWV8	329 aa		11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	RRP7A	Q9Y3A4	280 aa	Known RBP	11.71	□□□□□ -0.53
CHEK2-223	ENST00000472807	FER1L6	Q2WGJ9	1857 aa		11.7	□□□□□ -0.54
CHEK2-223	ENST00000472807	CCDC88A	Q3V6T2	1871 aa		11.7	□□□□□ -0.54
CHEK2-223	ENST00000472807	MAP3K15	Q6ZN16	1313 aa		11.7	□□□□□ -0.54
CHEK2-223	ENST00000472807	ERVV-1	B6SEH8	477 aa		11.7	□□□□□ -0.54
CHEK2-223	ENST00000472807	GTF2E1	P29083	439 aa	Predicted RBP	11.7	□□□□□ -0.54
CHEK2-223	ENST00000472807	HLF	Q16534	295 aa		11.7	□□□□□ -0.54
CHEK2-223	ENST00000472807	CCDC146	Q8IYE0	955 aa		11.7	□□□□□ -0.54
CHEK2-223	ENST00000472807	NUP98	P52948	1817 aa		11.7	□□□□□ -0.54
CHEK2-223	ENST00000472807	SLX4	Q8IY92	1834 aa		11.7	□□□□□ -0.54
CHEK2-223	ENST00000472807	FAM177B	A6PVY3	158 aa		11.69	□□□□□ -0.54
CHEK2-223	ENST00000472807	NPR1	P16066	1061 aa		11.69	□□□□□ -0.54
CHEK2-223	ENST00000472807	RBM46	Q8TBY0	533 aa	Known RBP	11.69	□□□□□ -0.54
CHEK2-223	ENST00000472807	RUNDC1	Q96C34	613 aa		11.69	□□□□□ -0.54
CHEK2-223	ENST00000472807	NYX	Q9GZU5	481 aa		11.69	□□□□□ -0.54
CHEK2-223	ENST00000472807	TAOK3	Q9H2K8	898 aa		11.69	□□□□□ -0.54
CHEK2-223	ENST00000472807	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.68	□□□□□ -0.54
CHEK2-223	ENST00000472807	LTBP3	Q9NS15	1303 aa		11.68	□□□□□ -0.54
CHEK2-223	ENST00000472807	PRELP	P51888	382 aa		11.68	□□□□□ -0.54
CHEK2-223	ENST00000472807	NEUROD2	Q15784	382 aa		11.68	□□□□□ -0.54
CHEK2-223	ENST00000472807	TTLL7	Q6ZT98	887 aa		11.68	□□□□□ -0.54
CHEK2-223	ENST00000472807	ZBTB3	Q9H5J0	574 aa		11.68	□□□□□ -0.54
CHEK2-223	ENST00000472807	RRAGC	Q9HB90	399 aa		11.68	□□□□□ -0.54
CHEK2-223	ENST00000472807	DICER1	Q9UPY3	1922 aa	Known RBP	11.68	□□□□□ -0.54
CHEK2-223	ENST00000472807	PCNT	O95613	3336 aa		11.67	□□□□□ -0.54
CHEK2-223	ENST00000472807	KLRG2	A4D1S0	409 aa	Predicted RBP	11.67	□□□□□ -0.54
CHEK2-223	ENST00000472807	GLTPD2	A6NH11	291 aa		11.67	□□□□□ -0.54
CHEK2-223	ENST00000472807	EIF2S2	P20042	333 aa	Known RBP	11.67	□□□□□ -0.54
CHEK2-223	ENST00000472807	APLP1	P51693	650 aa		11.67	□□□□□ -0.54
CHEK2-223	ENST00000472807	ERFE	Q4G0M1	354 aa		11.67	□□□□□ -0.54
CHEK2-223	ENST00000472807	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.67	□□□□□ -0.54
CHEK2-223	ENST00000472807	ABCC12	Q96J65	1359 aa		11.67	□□□□□ -0.54
CHEK2-223	ENST00000472807	GPT	P24298	496 aa		11.66	□□□□□ -0.54
CHEK2-223	ENST00000472807	DSG3	P32926	999 aa		11.66	□□□□□ -0.54
CHEK2-223	ENST00000472807	FSTL1	Q12841	308 aa		11.66	□□□□□ -0.54
CHEK2-223	ENST00000472807	CCDC93	Q567U6	631 aa		11.66	□□□□□ -0.54
CHEK2-223	ENST00000472807	DPY19L2	Q6NUT2	758 aa		11.66	□□□□□ -0.54
CHEK2-223	ENST00000472807	ADAMTS8	Q9UP79	889 aa		11.66	□□□□□ -0.54
CHEK2-223	ENST00000472807	RIC1	Q4ADV7	1423 aa		11.66	□□□□□ -0.54
CHEK2-223	ENST00000472807	UBN2	Q6ZU65	1347 aa		11.65	□□□□□ -0.54
CHEK2-223	ENST00000472807	VEGFA	P15692	232 aa	Predicted RBP	11.65	□□□□□ -0.54
CHEK2-223	ENST00000472807	ALDH1B1	P30837	517 aa		11.65	□□□□□ -0.54
CHEK2-223	ENST00000472807	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.65	□□□□□ -0.54
CHEK2-223	ENST00000472807	NUTM1	Q86Y26	1132 aa		11.65	□□□□□ -0.54
CHEK2-223	ENST00000472807	LAS1L	Q9Y4W2	734 aa	Known RBP	11.65	□□□□□ -0.54
CHEK2-223	ENST00000472807	WDR90	Q96KV7	1748 aa		11.64	□□□□□ -0.55
CHEK2-223	ENST00000472807	CHL1	O00533	1208 aa		11.64	□□□□□ -0.55
CHEK2-223	ENST00000472807	PROSER3	Q2NL68	480 aa		11.64	□□□□□ -0.55
CHEK2-223	ENST00000472807	CRY2	Q49AN0	593 aa		11.64	□□□□□ -0.55
CHEK2-223	ENST00000472807	PARP10	Q53GL7	1025 aa		11.64	□□□□□ -0.55
CHEK2-223	ENST00000472807	PPP1R42	Q7Z4L9	355 aa		11.64	□□□□□ -0.55
CHEK2-223	ENST00000472807	RTKN2	Q8IZC4	609 aa		11.64	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms