RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 RRP7AQ9Y3A4 280 aaKnown RBP17.57■□□□□ 0.4
CPSF4-210ENST00000469897 EIF4A1P60842 406 aaKnown RBP17.56■□□□□ 0.4
CPSF4-210ENST00000469897 DNAJC5GQ8N7S2 189 aa17.56■□□□□ 0.4
CPSF4-210ENST00000469897 MASTLQ96GX5 879 aa17.56■□□□□ 0.4
CPSF4-210ENST00000469897 NRXN2Q9P2S2 1712 aa17.55■□□□□ 0.4
CPSF4-210ENST00000469897 VEGFAP15692 232 aaPredicted RBP17.55■□□□□ 0.4
CPSF4-210ENST00000469897 HTRA3P83110 453 aa17.55■□□□□ 0.4
CPSF4-210ENST00000469897 FSTL1Q12841 308 aa17.55■□□□□ 0.4
CPSF4-210ENST00000469897 DDX10Q13206 875 aaKnown RBP17.55■□□□□ 0.4
CPSF4-210ENST00000469897 PRPF40BQ6NWY9 871 aaKnown RBP17.55■□□□□ 0.4
CPSF4-210ENST00000469897 MAPK8IP3Q9UPT6 1336 aa17.54■□□□□ 0.4
CPSF4-210ENST00000469897 ZC3H4Q9UPT8 1303 aaKnown RBP17.54■□□□□ 0.4
CPSF4-210ENST00000469897 MYL6BP14649 208 aa17.54■□□□□ 0.4
CPSF4-210ENST00000469897 GTF2E1P29083 439 aaPredicted RBP17.54■□□□□ 0.4
CPSF4-210ENST00000469897 ERFEQ4G0M1 354 aa17.54■□□□□ 0.4
CPSF4-210ENST00000469897 DPY19L2Q6NUT2 758 aa17.54■□□□□ 0.4
CPSF4-210ENST00000469897 BRCA1P38398 1863 aaKnown RBP17.54■□□□□ 0.4
CPSF4-210ENST00000469897 RIPK4P57078 832 aa17.53■□□□□ 0.4
CPSF4-210ENST00000469897 RALBP1Q15311 655 aa17.53■□□□□ 0.4
CPSF4-210ENST00000469897 CEP350Q5VT06 3117 aa17.53■□□□□ 0.4
CPSF4-210ENST00000469897 SIPA1L3O60292 1781 aaPredicted RBP17.53■□□□□ 0.4
CPSF4-210ENST00000469897 KLRG2A4D1S0 409 aaPredicted RBP17.52■□□□□ 0.4
CPSF4-210ENST00000469897 POTECB2RU33 542 aa17.52■□□□□ 0.4
CPSF4-210ENST00000469897 RGL2O15211 777 aa17.52■□□□□ 0.4
CPSF4-210ENST00000469897 NPR1P16066 1061 aa17.52■□□□□ 0.4
CPSF4-210ENST00000469897 TTLL7Q6ZT98 887 aa17.52■□□□□ 0.4
CPSF4-210ENST00000469897 C7orf43Q8WVR3 580 aa17.52■□□□□ 0.4
CPSF4-210ENST00000469897 TAOK3Q9H2K8 898 aa17.52■□□□□ 0.4
CPSF4-210ENST00000469897 AFDNP55196 1824 aaKnown RBP17.51■□□□□ 0.39
CPSF4-210ENST00000469897 ARFGEF1Q9Y6D6 1849 aa17.51■□□□□ 0.39
CPSF4-210ENST00000469897 SMC1BQ8NDV3 1235 aa17.51■□□□□ 0.39
CPSF4-210ENST00000469897 ERVV-1B6SEH8 477 aa17.5■□□□□ 0.39
CPSF4-210ENST00000469897 TSPYL4Q9UJ04 414 aa17.5■□□□□ 0.39
CPSF4-210ENST00000469897 LTBP3Q9NS15 1303 aa17.49■□□□□ 0.39
CPSF4-210ENST00000469897 VIRMAQ69YN4 1812 aaKnown RBP17.49■□□□□ 0.39
CPSF4-210ENST00000469897 SOGA3Q5TF21 947 aa17.49■□□□□ 0.39
CPSF4-210ENST00000469897 OLFM4Q6UX06 510 aa17.49■□□□□ 0.39
CPSF4-210ENST00000469897 NUTM1Q86Y26 1132 aa17.49■□□□□ 0.39
CPSF4-210ENST00000469897 ZBTB3Q9H5J0 574 aa17.49■□□□□ 0.39
CPSF4-210ENST00000469897 MAP3K15Q6ZN16 1313 aa17.48■□□□□ 0.39
CPSF4-210ENST00000469897 DDNO94850 711 aaPredicted RBP17.48■□□□□ 0.39
CPSF4-210ENST00000469897 EIF2S2P20042 333 aaKnown RBP17.48■□□□□ 0.39
CPSF4-210ENST00000469897 GPTP24298 496 aa17.48■□□□□ 0.39
CPSF4-210ENST00000469897 TMPOP42166 694 aaKnown RBP17.48■□□□□ 0.39
CPSF4-210ENST00000469897 KIF6Q6ZMV9 814 aa17.48■□□□□ 0.39
CPSF4-210ENST00000469897 ALDH1B1P30837 517 aa17.47■□□□□ 0.39
CPSF4-210ENST00000469897 NEUROD2Q15784 382 aa17.47■□□□□ 0.39
CPSF4-210ENST00000469897 CCDC93Q567U6 631 aa17.47■□□□□ 0.39
CPSF4-210ENST00000469897 SCN7AQ01118 1682 aa17.46■□□□□ 0.39
CPSF4-210ENST00000469897 SUSD4Q5VX71 490 aa17.46■□□□□ 0.39
CPSF4-210ENST00000469897 CCDC146Q8IYE0 955 aa17.46■□□□□ 0.39
CPSF4-210ENST00000469897 NYXQ9GZU5 481 aa17.46■□□□□ 0.39
CPSF4-210ENST00000469897 PDIA6Q15084 440 aa17.45■□□□□ 0.38
CPSF4-210ENST00000469897 IFFO2Q5TF58 517 aa17.45■□□□□ 0.38
CPSF4-210ENST00000469897 KLRG1Q96E93 195 aa17.45■□□□□ 0.38
CPSF4-210ENST00000469897 ZNF277Q9NRM2 450 aaPredicted RBP17.45■□□□□ 0.38
CPSF4-210ENST00000469897 ANXA1P04083 346 aa17.44■□□□□ 0.38
CPSF4-210ENST00000469897 FKBP4Q02790 459 aaKnown RBP eCLIP17.44■□□□□ 0.38
CPSF4-210ENST00000469897 GIGYF2Q6Y7W6 1299 aaKnown RBP17.44■□□□□ 0.38
CPSF4-210ENST00000469897 ZNF34Q8IZ26 560 aa17.44■□□□□ 0.38
CPSF4-210ENST00000469897 RTKN2Q8IZC4 609 aa17.44■□□□□ 0.38
CPSF4-210ENST00000469897 MYBBP1AQ9BQG0 1328 aaKnown RBP17.44■□□□□ 0.38
CPSF4-210ENST00000469897 CRY2Q49AN0 593 aa17.43■□□□□ 0.38
CPSF4-210ENST00000469897 SYNE4Q8N205 404 aa17.43■□□□□ 0.38
CPSF4-210ENST00000469897 NECTIN2Q92692 538 aa17.43■□□□□ 0.38
CPSF4-210ENST00000469897 BABAM1Q9NWV8 329 aa17.43■□□□□ 0.38
CPSF4-210ENST00000469897 LAS1LQ9Y4W2 734 aaKnown RBP17.43■□□□□ 0.38
CPSF4-210ENST00000469897 ANKRD31Q8N7Z5 1873 aa17.43■□□□□ 0.38
CPSF4-210ENST00000469897 UBN2Q6ZU65 1347 aa17.43■□□□□ 0.38
CPSF4-210ENST00000469897 LMOD3Q0VAK6 560 aa17.42■□□□□ 0.38
CPSF4-210ENST00000469897 PROSER3Q2NL68 480 aa17.42■□□□□ 0.38
CPSF4-210ENST00000469897 LRP10Q7Z4F1 713 aa17.42■□□□□ 0.38
CPSF4-210ENST00000469897 ERBB4Q15303 1308 aa17.42■□□□□ 0.38
CPSF4-210ENST00000469897 TCERG1O14776 1098 aaKnown RBP17.41■□□□□ 0.38
CPSF4-210ENST00000469897 POTEIP0CG38 1075 aa17.41■□□□□ 0.38
CPSF4-210ENST00000469897 POTEJP0CG39 1038 aa17.41■□□□□ 0.38
CPSF4-210ENST00000469897 AIMP1Q12904 312 aaKnown RBP17.41■□□□□ 0.38
CPSF4-210ENST00000469897 RPGRQ92834 1020 aaKnown RBP17.41■□□□□ 0.38
CPSF4-210ENST00000469897 RUNDC1Q96C34 613 aa17.41■□□□□ 0.38
CPSF4-210ENST00000469897 ADAMTS8Q9UP79 889 aa17.41■□□□□ 0.38
CPSF4-210ENST00000469897 ABCC12Q96J65 1359 aa17.4■□□□□ 0.38
CPSF4-210ENST00000469897 SBF1O95248 1867 aa17.4■□□□□ 0.38
CPSF4-210ENST00000469897 CHL1O00533 1208 aa17.4■□□□□ 0.38
CPSF4-210ENST00000469897 HOXA10P31260 410 aaPredicted RBP17.4■□□□□ 0.38
CPSF4-210ENST00000469897 WDR43Q15061 677 aaKnown RBP eCLIP17.4■□□□□ 0.38
CPSF4-210ENST00000469897 KRT24Q2M2I5 525 aa17.4■□□□□ 0.38
CPSF4-210ENST00000469897 COPS6Q7L5N1 327 aa17.4■□□□□ 0.38
CPSF4-210ENST00000469897 PPP1R42Q7Z4L9 355 aa17.4■□□□□ 0.38
CPSF4-210ENST00000469897 TRIM35Q9UPQ4 493 aa17.4■□□□□ 0.38
CPSF4-210ENST00000469897 DLEC1Q9Y238 1755 aa17.4■□□□□ 0.38
CPSF4-210ENST00000469897 NTSR2O95665 410 aa17.39■□□□□ 0.37
CPSF4-210ENST00000469897 IARSP41252 1262 aaKnown RBP17.39■□□□□ 0.37
CPSF4-210ENST00000469897 CHADLQ6NUI6 762 aa17.39■□□□□ 0.37
CPSF4-210ENST00000469897 C3orf67Q6ZVT6 689 aa17.39■□□□□ 0.37
CPSF4-210ENST00000469897 JMYQ8N9B5 988 aa17.39■□□□□ 0.37
CPSF4-210ENST00000469897 RBM17Q96I25 401 aaKnown RBP17.39■□□□□ 0.37
CPSF4-210ENST00000469897 COL11A2P13942 1736 aaPredicted RBP17.38■□□□□ 0.37
CPSF4-210ENST00000469897 SLX4Q8IY92 1834 aa17.38■□□□□ 0.37
CPSF4-210ENST00000469897 PARP10Q53GL7 1025 aa17.38■□□□□ 0.37
CPSF4-210ENST00000469897 XAGE3Q8WTP9 111 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms