RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 ADGRL3Q9HAR2 1447 aa8.71□□□□□ -1.01
USP48-206ENST00000464577 RIMS1Q86UR5 1692 aaKnown RBP8.71□□□□□ -1.01
USP48-206ENST00000464577 ABCB7O75027 752 aa8.71□□□□□ -1.01
USP48-206ENST00000464577 UBTFL1P0CB47 393 aaPredicted RBP8.71□□□□□ -1.01
USP48-206ENST00000464577 CBX1P83916 185 aa8.71□□□□□ -1.01
USP48-206ENST00000464577 HSP90AB2PQ58FF8 381 aa8.71□□□□□ -1.01
USP48-206ENST00000464577 RASEFQ8IZ41 740 aa8.71□□□□□ -1.01
USP48-206ENST00000464577 HYPKQ9NX55 129 aa8.71□□□□□ -1.01
USP48-206ENST00000464577 MIS18AQ9NYP9 233 aa8.71□□□□□ -1.01
USP48-206ENST00000464577 SBNO1A3KN83 1393 aa8.71□□□□□ -1.01
USP48-206ENST00000464577 NCKAP5LQ9HCH0 1330 aa8.71□□□□□ -1.02
USP48-206ENST00000464577 PLEKHG3A1L390 1219 aa8.71□□□□□ -1.02
USP48-206ENST00000464577 GJB2P29033 226 aa8.71□□□□□ -1.02
USP48-206ENST00000464577 RHPN1Q8TCX5 695 aa8.71□□□□□ -1.02
USP48-206ENST00000464577 KIF1BPQ96EK5 621 aa8.71□□□□□ -1.02
USP48-206ENST00000464577 USP44Q9H0E7 712 aa8.71□□□□□ -1.02
USP48-206ENST00000464577 ZHX1Q9UKY1 873 aaPredicted RBP8.71□□□□□ -1.02
USP48-206ENST00000464577 FLT4P35916 1363 aa8.71□□□□□ -1.02
USP48-206ENST00000464577 TTC41PQ6P2S7 1318 aa8.7□□□□□ -1.02
USP48-206ENST00000464577 IGSF1Q8N6C5 1336 aa8.7□□□□□ -1.02
USP48-206ENST00000464577 DNM1Q05193 864 aaKnown RBP8.7□□□□□ -1.02
USP48-206ENST00000464577 LHX8Q68G74 356 aa8.7□□□□□ -1.02
USP48-206ENST00000464577 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.7□□□□□ -1.02
USP48-206ENST00000464577 TXNDC2Q86VQ3 553 aa8.7□□□□□ -1.02
USP48-206ENST00000464577 NUTM1Q86Y26 1132 aa8.7□□□□□ -1.02
USP48-206ENST00000464577 RUFY2Q8WXA3 655 aa8.7□□□□□ -1.02
USP48-206ENST00000464577 IL1RAPL2Q9NP60 686 aa8.7□□□□□ -1.02
USP48-206ENST00000464577 CEP170BQ9Y4F5 1589 aaPredicted RBP8.69□□□□□ -1.02
USP48-206ENST00000464577 ZBTB7CA1YPR0 619 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 SMTNL1A8MU46 457 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 FOXO3O43524 673 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 LARGE1O95461 756 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 MAP3K11Q16584 847 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 HSP90AB4PQ58FF6 505 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 NUP62CLQ9H1M0 184 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 ZSWIM6Q9HCJ5 1215 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 PDRG1Q9NUG6 133 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 PTPRUQ92729 1446 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 SURF6O75683 361 aaKnown RBP8.69□□□□□ -1.02
USP48-206ENST00000464577 CASTP20810 708 aaKnown RBP8.69□□□□□ -1.02
USP48-206ENST00000464577 KRT85P78386 507 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 PLCB2Q00722 1185 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 TYRO3Q06418 890 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 RBM43Q6ZSC3 357 aaKnown RBP8.69□□□□□ -1.02
USP48-206ENST00000464577 PPP1R42Q7Z4L9 355 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 CCDC83Q8IWF9 413 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 OGFRQ9NZT2 677 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 MRVI1Q9Y6F6 885 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 ACEP12821 1306 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 TTC21AQ8NDW8 1320 aa8.69□□□□□ -1.02
USP48-206ENST00000464577 FAM177BA6PVY3 158 aa8.68□□□□□ -1.02
USP48-206ENST00000464577 GLRX3O76003 335 aaKnown RBP8.68□□□□□ -1.02
USP48-206ENST00000464577 PTGS1P23219 599 aa8.68□□□□□ -1.02
USP48-206ENST00000464577 ST3GAL1Q11201 340 aa8.68□□□□□ -1.02
USP48-206ENST00000464577 SPC24Q8NBT2 197 aa8.68□□□□□ -1.02
USP48-206ENST00000464577 DDX19AQ9NUU7 478 aaKnown RBP8.68□□□□□ -1.02
USP48-206ENST00000464577 CYP46A1Q9Y6A2 500 aa8.68□□□□□ -1.02
USP48-206ENST00000464577 PDCP20941 246 aa8.68□□□□□ -1.02
USP48-206ENST00000464577 NCBP1Q09161 790 aaKnown RBP8.68□□□□□ -1.02
USP48-206ENST00000464577 TTC6Q86TZ1 520 aa8.68□□□□□ -1.02
USP48-206ENST00000464577 PLA2G4DQ86XP0 818 aa8.68□□□□□ -1.02
USP48-206ENST00000464577 TDRD7Q8NHU6 1098 aaKnown RBP8.68□□□□□ -1.02
USP48-206ENST00000464577 JAKMIP1Q96N16 626 aaKnown RBP8.68□□□□□ -1.02
USP48-206ENST00000464577 PAXBP1Q9Y5B6 917 aa8.68□□□□□ -1.02
USP48-206ENST00000464577 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.67□□□□□ -1.02
USP48-206ENST00000464577 CAVIN2O95810 425 aa8.67□□□□□ -1.02
USP48-206ENST00000464577 MAP4K4O95819 1239 aaPredicted RBP8.67□□□□□ -1.02
USP48-206ENST00000464577 CDC25BP30305 580 aa8.67□□□□□ -1.02
USP48-206ENST00000464577 ZNF75DP51815 510 aa8.67□□□□□ -1.02
USP48-206ENST00000464577 GABPB1Q06547 395 aaPredicted RBP8.67□□□□□ -1.02
USP48-206ENST00000464577 TAF3Q5VWG9 929 aa8.67□□□□□ -1.02
USP48-206ENST00000464577 CWC27Q6UX04 472 aaKnown RBP8.67□□□□□ -1.02
USP48-206ENST00000464577 CGNQ9P2M7 1197 aaKnown RBP8.67□□□□□ -1.02
USP48-206ENST00000464577 ROBO2Q9HCK4 1378 aa8.67□□□□□ -1.02
USP48-206ENST00000464577 VPS37CA5D8V6 355 aaPredicted RBP8.66□□□□□ -1.02
USP48-206ENST00000464577 GNAT3A8MTJ3 354 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 U2AF2P26368 475 aaKnown RBP eCLIP8.66□□□□□ -1.02
USP48-206ENST00000464577 HDGFP51858 240 aaKnown RBP8.66□□□□□ -1.02
USP48-206ENST00000464577 SCAND2PQ9GZW5 306 aaPredicted RBP8.66□□□□□ -1.02
USP48-206ENST00000464577 ALDH8A1Q9H2A2 487 aaPredicted RBP8.66□□□□□ -1.02
USP48-206ENST00000464577 CLSTN2Q9H4D0 955 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 CBX8Q9HC52 389 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 NPHP3Q7Z494 1330 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 NWD1Q149M9 1564 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 SPDYE4A6NLX3 237 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 ZBTB22O15209 634 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 SRGAP3O43295 1099 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 CPA1P15085 419 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 LIG1P18858 919 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 MTX1Q13505 466 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 NECTIN1Q15223 517 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 ME3Q16798 604 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 ZSCAN25Q6NSZ9 544 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 PRPF40BQ6NWY9 871 aaKnown RBP8.66□□□□□ -1.02
USP48-206ENST00000464577 CCDC186Q7Z3E2 898 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 EYA1Q99502 592 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 LARP6Q9BRS8 491 aaKnown RBP8.66□□□□□ -1.02
USP48-206ENST00000464577 TNMDQ9H2S6 317 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 SNRKQ9NRH2 765 aa8.66□□□□□ -1.02
USP48-206ENST00000464577 CTNNA3Q9UI47 895 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms