RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 NBPF5PQ86XG9 351 aaPredicted RBP18.96■□□□□ 0.63
SNRNP40-203ENST00000463988 SRGNP10124 158 aa18.95■□□□□ 0.62
SNRNP40-203ENST00000463988 DDX10Q13206 875 aaKnown RBP18.95■□□□□ 0.62
SNRNP40-203ENST00000463988 CCDC24Q8N4L8 307 aa18.95■□□□□ 0.62
SNRNP40-203ENST00000463988 CNKSR1Q969H4 720 aa18.95■□□□□ 0.62
SNRNP40-203ENST00000463988 LAMB4A4D0S4 1761 aa18.94■□□□□ 0.62
SNRNP40-203ENST00000463988 NFKBIEO00221 500 aa18.94■□□□□ 0.62
SNRNP40-203ENST00000463988 TPTE2Q6XPS3 522 aa18.94■□□□□ 0.62
SNRNP40-203ENST00000463988 RBM46Q8TBY0 533 aaKnown RBP18.94■□□□□ 0.62
SNRNP40-203ENST00000463988 MASTLQ96GX5 879 aa18.94■□□□□ 0.62
SNRNP40-203ENST00000463988 THUMPD2Q9BTF0 503 aaKnown RBP18.94■□□□□ 0.62
SNRNP40-203ENST00000463988 MYBBP1AQ9BQG0 1328 aaKnown RBP18.94■□□□□ 0.62
SNRNP40-203ENST00000463988 KLRG2A4D1S0 409 aaPredicted RBP18.93■□□□□ 0.62
SNRNP40-203ENST00000463988 PRELPP51888 382 aa18.93■□□□□ 0.62
SNRNP40-203ENST00000463988 BABAM1Q9NWV8 329 aa18.93■□□□□ 0.62
SNRNP40-203ENST00000463988 NIP7Q9Y221 180 aaKnown RBP eCLIP18.93■□□□□ 0.62
SNRNP40-203ENST00000463988 COL11A2P13942 1736 aaPredicted RBP18.93■□□□□ 0.62
SNRNP40-203ENST00000463988 ERVV-1B6SEH8 477 aa18.92■□□□□ 0.62
SNRNP40-203ENST00000463988 C21orf2O43822 256 aa18.92■□□□□ 0.62
SNRNP40-203ENST00000463988 RIPK4P57078 832 aa18.92■□□□□ 0.62
SNRNP40-203ENST00000463988 C16orf71Q8IYS4 520 aaPredicted RBP18.92■□□□□ 0.62
SNRNP40-203ENST00000463988 GLTPD2A6NH11 291 aa18.91■□□□□ 0.62
SNRNP40-203ENST00000463988 APLP1P51693 650 aa18.91■□□□□ 0.62
SNRNP40-203ENST00000463988 LMOD3Q0VAK6 560 aa18.91■□□□□ 0.62
SNRNP40-203ENST00000463988 SOGA3Q5TF21 947 aa18.91■□□□□ 0.62
SNRNP40-203ENST00000463988 ERBB4Q15303 1308 aa18.91■□□□□ 0.62
SNRNP40-203ENST00000463988 LTBP3Q9NS15 1303 aa18.91■□□□□ 0.62
SNRNP40-203ENST00000463988 TNRC6CQ9HCJ0 1690 aaKnown RBP18.9■□□□□ 0.62
SNRNP40-203ENST00000463988 FSTL1Q12841 308 aa18.9■□□□□ 0.62
SNRNP40-203ENST00000463988 HLFQ16534 295 aa18.9■□□□□ 0.62
SNRNP40-203ENST00000463988 PRPF40BQ6NWY9 871 aaKnown RBP18.9■□□□□ 0.62
SNRNP40-203ENST00000463988 RRAGCQ9HB90 399 aa18.9■□□□□ 0.62
SNRNP40-203ENST00000463988 NPR1P16066 1061 aa18.89■□□□□ 0.61
SNRNP40-203ENST00000463988 TMPOP42166 694 aaKnown RBP18.89■□□□□ 0.61
SNRNP40-203ENST00000463988 TSPYL4Q9UJ04 414 aa18.89■□□□□ 0.61
SNRNP40-203ENST00000463988 RRP7AQ9Y3A4 280 aaKnown RBP18.89■□□□□ 0.61
SNRNP40-203ENST00000463988 MAP3K15Q6ZN16 1313 aa18.89■□□□□ 0.61
SNRNP40-203ENST00000463988 FER1L6Q2WGJ9 1857 aa18.88■□□□□ 0.61
SNRNP40-203ENST00000463988 KIF6Q6ZMV9 814 aa18.88■□□□□ 0.61
SNRNP40-203ENST00000463988 TAOK3Q9H2K8 898 aa18.88■□□□□ 0.61
SNRNP40-203ENST00000463988 VEGFAP15692 232 aaPredicted RBP18.87■□□□□ 0.61
SNRNP40-203ENST00000463988 SLX4Q8IY92 1834 aa18.87■□□□□ 0.61
SNRNP40-203ENST00000463988 C7orf43Q8WVR3 580 aa18.87■□□□□ 0.61
SNRNP40-203ENST00000463988 NYXQ9GZU5 481 aa18.87■□□□□ 0.61
SNRNP40-203ENST00000463988 ZNF219Q9P2Y4 722 aaPredicted RBP18.87■□□□□ 0.61
SNRNP40-203ENST00000463988 ARFGEF2Q9Y6D5 1785 aa18.87■□□□□ 0.61
SNRNP40-203ENST00000463988 CCDC88AQ3V6T2 1871 aa18.86■□□□□ 0.61
SNRNP40-203ENST00000463988 DPY19L2Q6NUT2 758 aa18.86■□□□□ 0.61
SNRNP40-203ENST00000463988 TTLL7Q6ZT98 887 aa18.86■□□□□ 0.61
SNRNP40-203ENST00000463988 NGEFQ8N5V2 710 aa18.86■□□□□ 0.61
SNRNP40-203ENST00000463988 MYL6BP14649 208 aa18.85■□□□□ 0.61
SNRNP40-203ENST00000463988 GTF2E1P29083 439 aaPredicted RBP18.85■□□□□ 0.61
SNRNP40-203ENST00000463988 ERFEQ4G0M1 354 aa18.85■□□□□ 0.61
SNRNP40-203ENST00000463988 TIAM2Q8IVF5 1701 aa18.85■□□□□ 0.61
SNRNP40-203ENST00000463988 DICER1Q9UPY3 1922 aaKnown RBP18.84■□□□□ 0.61
SNRNP40-203ENST00000463988 IBTKQ9P2D0 1353 aaPredicted RBP18.84■□□□□ 0.61
SNRNP40-203ENST00000463988 FAM177BA6PVY3 158 aa18.84■□□□□ 0.61
SNRNP40-203ENST00000463988 ALDH1B1P30837 517 aa18.84■□□□□ 0.61
SNRNP40-203ENST00000463988 WDR43Q15061 677 aaKnown RBP eCLIP18.84■□□□□ 0.61
SNRNP40-203ENST00000463988 CCDC93Q567U6 631 aa18.84■□□□□ 0.61
SNRNP40-203ENST00000463988 RUNDC1Q96C34 613 aa18.84■□□□□ 0.61
SNRNP40-203ENST00000463988 NUP98P52948 1817 aa18.84■□□□□ 0.61
SNRNP40-203ENST00000463988 CRY2Q49AN0 593 aa18.83■□□□□ 0.6
SNRNP40-203ENST00000463988 GIGYF2Q6Y7W6 1299 aaKnown RBP18.83■□□□□ 0.6
SNRNP40-203ENST00000463988 ZNF34Q8IZ26 560 aa18.83■□□□□ 0.6
SNRNP40-203ENST00000463988 SMC1BQ8NDV3 1235 aa18.83■□□□□ 0.6
SNRNP40-203ENST00000463988 RIC1Q4ADV7 1423 aa18.83■□□□□ 0.6
SNRNP40-203ENST00000463988 CHL1O00533 1208 aa18.82■□□□□ 0.6
SNRNP40-203ENST00000463988 PDIA6Q15084 440 aa18.82■□□□□ 0.6
SNRNP40-203ENST00000463988 LRP10Q7Z4F1 713 aa18.82■□□□□ 0.6
SNRNP40-203ENST00000463988 ZBTB3Q9H5J0 574 aa18.82■□□□□ 0.6
SNRNP40-203ENST00000463988 CCDC146Q8IYE0 955 aa18.81■□□□□ 0.6
SNRNP40-203ENST00000463988 RTKN2Q8IZC4 609 aa18.81■□□□□ 0.6
SNRNP40-203ENST00000463988 DNAJC5GQ8N7S2 189 aa18.81■□□□□ 0.6
SNRNP40-203ENST00000463988 PRKRIP1Q9H875 184 aaPredicted RBP18.81■□□□□ 0.6
SNRNP40-203ENST00000463988 ADAMTS8Q9UP79 889 aa18.81■□□□□ 0.6
SNRNP40-203ENST00000463988 WDR90Q96KV7 1748 aa18.8■□□□□ 0.6
SNRNP40-203ENST00000463988 UBN2Q6ZU65 1347 aa18.8■□□□□ 0.6
SNRNP40-203ENST00000463988 CACNA1SQ13698 1873 aa18.8■□□□□ 0.6
SNRNP40-203ENST00000463988 POTECB2RU33 542 aa18.8■□□□□ 0.6
SNRNP40-203ENST00000463988 EIF2S2P20042 333 aaKnown RBP18.8■□□□□ 0.6
SNRNP40-203ENST00000463988 FKBP4Q02790 459 aaKnown RBP eCLIP18.8■□□□□ 0.6
SNRNP40-203ENST00000463988 NEUROD2Q15784 382 aa18.8■□□□□ 0.6
SNRNP40-203ENST00000463988 PARP10Q53GL7 1025 aa18.8■□□□□ 0.6
SNRNP40-203ENST00000463988 NUTM1Q86Y26 1132 aa18.8■□□□□ 0.6
SNRNP40-203ENST00000463988 TRIM35Q9UPQ4 493 aa18.8■□□□□ 0.6
SNRNP40-203ENST00000463988 ABCC12Q96J65 1359 aa18.8■□□□□ 0.6
SNRNP40-203ENST00000463988 GPTP24298 496 aa18.79■□□□□ 0.6
SNRNP40-203ENST00000463988 HOXA10P31260 410 aaPredicted RBP18.79■□□□□ 0.6
SNRNP40-203ENST00000463988 SUSD4Q5VX71 490 aa18.79■□□□□ 0.6
SNRNP40-203ENST00000463988 CC2D2BQ6DHV5 1058 aa18.78■□□□□ 0.6
SNRNP40-203ENST00000463988 PPP1R42Q7Z4L9 355 aa18.78■□□□□ 0.6
SNRNP40-203ENST00000463988 NTSR2O95665 410 aa18.77■□□□□ 0.6
SNRNP40-203ENST00000463988 PROSER3Q2NL68 480 aa18.77■□□□□ 0.6
SNRNP40-203ENST00000463988 HOXB7P09629 217 aa18.76■□□□□ 0.59
SNRNP40-203ENST00000463988 GRIPAP1Q4V328 841 aa18.76■□□□□ 0.59
SNRNP40-203ENST00000463988 HSP90AB3PQ58FF7 597 aa18.76■□□□□ 0.59
SNRNP40-203ENST00000463988 DDX21Q9NR30 783 aaKnown RBP eCLIP18.76■□□□□ 0.59
SNRNP40-203ENST00000463988 RNF123Q5XPI4 1314 aa18.75■□□□□ 0.59
SNRNP40-203ENST00000463988 SLC10A5Q5PT55 438 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms