RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 NPHP1O15259 732 aa13.33□□□□□ -0.28
SF3A3-204ENST00000462258 ST5P78524 1137 aa13.33□□□□□ -0.28
SF3A3-204ENST00000462258 CLEC4GQ6UXB4 293 aa13.33□□□□□ -0.28
SF3A3-204ENST00000462258 C2CD5Q86YS7 1000 aa13.33□□□□□ -0.28
SF3A3-204ENST00000462258 TRIM35Q9UPQ4 493 aa13.33□□□□□ -0.28
SF3A3-204ENST00000462258 KIF6Q6ZMV9 814 aa13.32□□□□□ -0.28
SF3A3-204ENST00000462258 ARHGAP27Q6ZUM4 889 aa13.32□□□□□ -0.28
SF3A3-204ENST00000462258 CCDC24Q8N4L8 307 aa13.32□□□□□ -0.28
SF3A3-204ENST00000462258 FER1L6Q2WGJ9 1857 aa13.31□□□□□ -0.28
SF3A3-204ENST00000462258 H0YIN7 160 aa13.31□□□□□ -0.28
SF3A3-204ENST00000462258 MYL6BP14649 208 aa13.31□□□□□ -0.28
SF3A3-204ENST00000462258 PDE6BP35913 854 aa13.31□□□□□ -0.28
SF3A3-204ENST00000462258 NBPF5PQ86XG9 351 aaPredicted RBP13.31□□□□□ -0.28
SF3A3-204ENST00000462258 NGEFQ8N5V2 710 aa13.31□□□□□ -0.28
SF3A3-204ENST00000462258 BRIP1Q9BX63 1249 aa13.31□□□□□ -0.28
SF3A3-204ENST00000462258 NIP7Q9Y221 180 aaKnown RBP eCLIP13.31□□□□□ -0.28
SF3A3-204ENST00000462258 CCDC88AQ3V6T2 1871 aa13.31□□□□□ -0.28
SF3A3-204ENST00000462258 HLFQ16534 295 aa13.3□□□□□ -0.28
SF3A3-204ENST00000462258 TTLL6Q8N841 843 aa13.3□□□□□ -0.28
SF3A3-204ENST00000462258 ZNF526Q8TF50 670 aaPredicted RBP13.3□□□□□ -0.28
SF3A3-204ENST00000462258 GPBP1L1Q9HC44 474 aaPredicted RBP13.3□□□□□ -0.28
SF3A3-204ENST00000462258 PDZRN3Q9UPQ7 1066 aa13.3□□□□□ -0.28
SF3A3-204ENST00000462258 LAS1LQ9Y4W2 734 aaKnown RBP13.3□□□□□ -0.28
SF3A3-204ENST00000462258 MAP3K15Q6ZN16 1313 aa13.3□□□□□ -0.28
SF3A3-204ENST00000462258 SLX4Q8IY92 1834 aa13.29□□□□□ -0.28
SF3A3-204ENST00000462258 EIF2S2P20042 333 aaKnown RBP13.29□□□□□ -0.28
SF3A3-204ENST00000462258 TTLL7Q6ZT98 887 aa13.29□□□□□ -0.28
SF3A3-204ENST00000462258 ERVV-1B6SEH8 477 aa13.28□□□□□ -0.28
SF3A3-204ENST00000462258 CHL1O00533 1208 aa13.28□□□□□ -0.28
SF3A3-204ENST00000462258 APAF1O14727 1248 aa13.28□□□□□ -0.28
SF3A3-204ENST00000462258 RASSF7Q02833 373 aa13.28□□□□□ -0.28
SF3A3-204ENST00000462258 KRT24Q2M2I5 525 aa13.28□□□□□ -0.28
SF3A3-204ENST00000462258 CCDC184Q52MB2 194 aa13.28□□□□□ -0.28
SF3A3-204ENST00000462258 ZNF622Q969S3 477 aaKnown RBP eCLIP13.28□□□□□ -0.286e-13■□□□□ 10.7
SF3A3-204ENST00000462258 ZBTB3Q9H5J0 574 aa13.28□□□□□ -0.28
SF3A3-204ENST00000462258 DICER1Q9UPY3 1922 aaKnown RBP13.28□□□□□ -0.28
SF3A3-204ENST00000462258 ABCC12Q96J65 1359 aa13.28□□□□□ -0.28
SF3A3-204ENST00000462258 IBTKQ9P2D0 1353 aaPredicted RBP13.28□□□□□ -0.28
SF3A3-204ENST00000462258 FAM177BA6PVY3 158 aa13.27□□□□□ -0.29
SF3A3-204ENST00000462258 ANP32CO43423 234 aa13.27□□□□□ -0.29
SF3A3-204ENST00000462258 C1QTNF8P60827 252 aa13.27□□□□□ -0.29
SF3A3-204ENST00000462258 PROSER3Q2NL68 480 aa13.27□□□□□ -0.29
SF3A3-204ENST00000462258 C9orf131Q5VYM1 1079 aa13.27□□□□□ -0.29
SF3A3-204ENST00000462258 LRP10Q7Z4F1 713 aa13.27□□□□□ -0.29
SF3A3-204ENST00000462258 RNF181Q9P0P0 153 aa13.27□□□□□ -0.29
SF3A3-204ENST00000462258 RIC1Q4ADV7 1423 aa13.27□□□□□ -0.29
SF3A3-204ENST00000462258 ANXA1P04083 346 aa13.26□□□□□ -0.29
SF3A3-204ENST00000462258 LAMB2P55268 1798 aa13.26□□□□□ -0.29
SF3A3-204ENST00000462258 PDIA6Q15084 440 aa13.26□□□□□ -0.29
SF3A3-204ENST00000462258 TPTE2Q6XPS3 522 aa13.26□□□□□ -0.29
SF3A3-204ENST00000462258 UBN2Q6ZU65 1347 aa13.26□□□□□ -0.29
SF3A3-204ENST00000462258 NECTIN2Q92692 538 aa13.26□□□□□ -0.29
SF3A3-204ENST00000462258 CFAP44Q96MT7 982 aa13.26□□□□□ -0.29
SF3A3-204ENST00000462258 HOXB7P09629 217 aa13.25□□□□□ -0.29
SF3A3-204ENST00000462258 SRGNP10124 158 aa13.25□□□□□ -0.29
SF3A3-204ENST00000462258 GPTP24298 496 aa13.25□□□□□ -0.29
SF3A3-204ENST00000462258 CALD1Q05682 793 aaKnown RBP13.25□□□□□ -0.29
SF3A3-204ENST00000462258 HDGFL1Q5TGJ6 251 aa13.25□□□□□ -0.29
SF3A3-204ENST00000462258 STYK1Q6J9G0 422 aa13.25□□□□□ -0.29
SF3A3-204ENST00000462258 CNKSR1Q969H4 720 aa13.25□□□□□ -0.29
SF3A3-204ENST00000462258 MASTLQ96GX5 879 aa13.25□□□□□ -0.29
SF3A3-204ENST00000462258 NYXQ9GZU5 481 aa13.25□□□□□ -0.29
SF3A3-204ENST00000462258 MRS2Q9HD23 443 aa13.25□□□□□ -0.29
SF3A3-204ENST00000462258 MBIPQ9NS73 344 aa13.25□□□□□ -0.29
SF3A3-204ENST00000462258 IFT57Q9NWB7 429 aa13.25□□□□□ -0.29
SF3A3-204ENST00000462258 NFKBIEO00221 500 aa13.24□□□□□ -0.29
SF3A3-204ENST00000462258 GTF2E1P29083 439 aaPredicted RBP13.24□□□□□ -0.29
SF3A3-204ENST00000462258 PRPF40BQ6NWY9 871 aaKnown RBP13.24□□□□□ -0.29
SF3A3-204ENST00000462258 GIGYF2Q6Y7W6 1299 aaKnown RBP13.24□□□□□ -0.29
SF3A3-204ENST00000462258 CHPF2Q9P2E5 772 aa13.24□□□□□ -0.29
SF3A3-204ENST00000462258 ZC3H4Q9UPT8 1303 aaKnown RBP13.23□□□□□ -0.29
SF3A3-204ENST00000462258 C21orf2O43822 256 aa13.23□□□□□ -0.29
SF3A3-204ENST00000462258 ZNF853P0CG23 659 aa13.23□□□□□ -0.29
SF3A3-204ENST00000462258 NPR1P16066 1061 aa13.23□□□□□ -0.29
SF3A3-204ENST00000462258 LMNB1P20700 586 aa13.23□□□□□ -0.29
SF3A3-204ENST00000462258 GNAI1P63096 354 aa13.23□□□□□ -0.29
SF3A3-204ENST00000462258 NUTM1Q86Y26 1132 aa13.23□□□□□ -0.29
SF3A3-204ENST00000462258 DDX21Q9NR30 783 aaKnown RBP eCLIP13.23□□□□□ -0.29
SF3A3-204ENST00000462258 ZNF219Q9P2Y4 722 aaPredicted RBP13.23□□□□□ -0.29
SF3A3-204ENST00000462258 DDX60Q8IY21 1712 aaKnown RBP13.22□□□□□ -0.29
SF3A3-204ENST00000462258 KLRG2A4D1S0 409 aaPredicted RBP13.22□□□□□ -0.29
SF3A3-204ENST00000462258 NTSR2O95665 410 aa13.22□□□□□ -0.29
SF3A3-204ENST00000462258 PRELPP51888 382 aa13.22□□□□□ -0.29
SF3A3-204ENST00000462258 ZNF34Q8IZ26 560 aa13.22□□□□□ -0.29
SF3A3-204ENST00000462258 XAGE3Q8WTP9 111 aa13.22□□□□□ -0.29
SF3A3-204ENST00000462258 SENP3-EIF4A1A0A087X0R7 540 aa13.21□□□□□ -0.29
SF3A3-204ENST00000462258 KIF3CO14782 793 aa13.21□□□□□ -0.29
SF3A3-204ENST00000462258 AIMP1Q12904 312 aaKnown RBP13.21□□□□□ -0.29
SF3A3-204ENST00000462258 ERFEQ4G0M1 354 aa13.21□□□□□ -0.29
SF3A3-204ENST00000462258 PARP10Q53GL7 1025 aa13.21□□□□□ -0.29
SF3A3-204ENST00000462258 SOGA3Q5TF21 947 aa13.21□□□□□ -0.29
SF3A3-204ENST00000462258 SUSD4Q5VX71 490 aa13.21□□□□□ -0.29
SF3A3-204ENST00000462258 DUSP27Q5VZP5 1158 aa13.21□□□□□ -0.29
SF3A3-204ENST00000462258 COPS6Q7L5N1 327 aa13.21□□□□□ -0.29
SF3A3-204ENST00000462258 TAOK3Q9H2K8 898 aa13.21□□□□□ -0.29
SF3A3-204ENST00000462258 KDM2BQ8NHM5 1336 aa13.2□□□□□ -0.3
SF3A3-204ENST00000462258 LTBP3Q9NS15 1303 aa13.2□□□□□ -0.3
SF3A3-204ENST00000462258 CRY2Q49AN0 593 aa13.2□□□□□ -0.3
SF3A3-204ENST00000462258 HSP90AB3PQ58FF7 597 aa13.2□□□□□ -0.3
SF3A3-204ENST00000462258 PPP1R42Q7Z4L9 355 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms