RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 MYL6BP14649 208 aa22.28■■□□□ 1.16
PRPF40A-204ENST00000450303 DLEC1Q9Y238 1755 aa22.27■■□□□ 1.16
PRPF40A-204ENST00000450303 C1QTNF8P60827 252 aa22.27■■□□□ 1.16
PRPF40A-204ENST00000450303 HLFQ16534 295 aa22.27■■□□□ 1.16
PRPF40A-204ENST00000450303 CLEC4GQ6UXB4 293 aa22.27■■□□□ 1.16
PRPF40A-204ENST00000450303 CNBD1Q8NA66 436 aa22.27■■□□□ 1.16
PRPF40A-204ENST00000450303 BRIP1Q9BX63 1249 aa22.27■■□□□ 1.16
PRPF40A-204ENST00000450303 GPBP1L1Q9HC44 474 aaPredicted RBP22.27■■□□□ 1.16
PRPF40A-204ENST00000450303 TRIM35Q9UPQ4 493 aa22.27■■□□□ 1.16
PRPF40A-204ENST00000450303 ZNF652Q9Y2D9 606 aa22.27■■□□□ 1.16
PRPF40A-204ENST00000450303 LAS1LQ9Y4W2 734 aaKnown RBP22.27■■□□□ 1.16
PRPF40A-204ENST00000450303 FAM177BA6PVY3 158 aa22.26■■□□□ 1.15
PRPF40A-204ENST00000450303 ZNF622Q969S3 477 aaKnown RBP eCLIP22.26■■□□□ 1.152e-21■■□□□ 13.3
PRPF40A-204ENST00000450303 EIF2S2P20042 333 aaKnown RBP22.25■■□□□ 1.15
PRPF40A-204ENST00000450303 PDE6BP35913 854 aa22.25■■□□□ 1.15
PRPF40A-204ENST00000450303 C9orf131Q5VYM1 1079 aa22.25■■□□□ 1.15
PRPF40A-204ENST00000450303 TTLL6Q8N841 843 aa22.25■■□□□ 1.15
PRPF40A-204ENST00000450303 NIP7Q9Y221 180 aaKnown RBP eCLIP22.25■■□□□ 1.15
PRPF40A-204ENST00000450303 ST5P78524 1137 aa22.24■■□□□ 1.15
PRPF40A-204ENST00000450303 TTLL7Q6ZT98 887 aa22.24■■□□□ 1.15
PRPF40A-204ENST00000450303 NBPF5PQ86XG9 351 aaPredicted RBP22.24■■□□□ 1.15
PRPF40A-204ENST00000450303 ZNF219Q9P2Y4 722 aaPredicted RBP22.23■■□□□ 1.15
PRPF40A-204ENST00000450303 COL11A2P13942 1736 aaPredicted RBP22.23■■□□□ 1.15
PRPF40A-204ENST00000450303 RASSF7Q02833 373 aa22.22■■□□□ 1.15
PRPF40A-204ENST00000450303 NECTIN2Q92692 538 aa22.22■■□□□ 1.15
PRPF40A-204ENST00000450303 BABAM1Q9NWV8 329 aa22.22■■□□□ 1.15
PRPF40A-204ENST00000450303 NUP98P52948 1817 aa22.22■■□□□ 1.15
PRPF40A-204ENST00000450303 SBF1O95248 1867 aa22.22■■□□□ 1.15
PRPF40A-204ENST00000450303 KRT24Q2M2I5 525 aa22.21■■□□□ 1.15
PRPF40A-204ENST00000450303 ZBTB3Q9H5J0 574 aa22.21■■□□□ 1.15
PRPF40A-204ENST00000450303 RNF181Q9P0P0 153 aa22.21■■□□□ 1.15
PRPF40A-204ENST00000450303 CACNA1SQ13698 1873 aa22.2■■□□□ 1.14
PRPF40A-204ENST00000450303 CHL1O00533 1208 aa22.2■■□□□ 1.14
PRPF40A-204ENST00000450303 ANXA1P04083 346 aa22.2■■□□□ 1.14
PRPF40A-204ENST00000450303 KIF6Q6ZMV9 814 aa22.2■■□□□ 1.14
PRPF40A-204ENST00000450303 MAP3K15Q6ZN16 1313 aa22.2■■□□□ 1.14
PRPF40A-204ENST00000450303 APAF1O14727 1248 aa22.19■■□□□ 1.14
PRPF40A-204ENST00000450303 TPTE2Q6XPS3 522 aa22.19■■□□□ 1.14
PRPF40A-204ENST00000450303 PDZRN3Q9UPQ7 1066 aa22.19■■□□□ 1.14
PRPF40A-204ENST00000450303 ERVV-1B6SEH8 477 aa22.18■■□□□ 1.14
PRPF40A-204ENST00000450303 RGL2O15211 777 aa22.18■■□□□ 1.14
PRPF40A-204ENST00000450303 C21orf2O43822 256 aa22.18■■□□□ 1.14
PRPF40A-204ENST00000450303 PDIA6Q15084 440 aa22.18■■□□□ 1.14
PRPF40A-204ENST00000450303 PROSER3Q2NL68 480 aa22.18■■□□□ 1.14
PRPF40A-204ENST00000450303 CCDC88AQ3V6T2 1871 aa22.17■■□□□ 1.14
PRPF40A-204ENST00000450303 ERBB4Q15303 1308 aa22.17■■□□□ 1.14
PRPF40A-204ENST00000450303 SRGNP10124 158 aa22.17■■□□□ 1.14
PRPF40A-204ENST00000450303 GPTP24298 496 aa22.17■■□□□ 1.14
PRPF40A-204ENST00000450303 SLX4Q8IY92 1834 aa22.16■■□□□ 1.14
PRPF40A-204ENST00000450303 SENP3-EIF4A1A0A087X0R7 540 aa22.16■■□□□ 1.14
PRPF40A-204ENST00000450303 GTF2E1P29083 439 aaPredicted RBP22.16■■□□□ 1.14
PRPF40A-204ENST00000450303 PRELPP51888 382 aa22.16■■□□□ 1.14
PRPF40A-204ENST00000450303 STYK1Q6J9G0 422 aa22.15■■□□□ 1.14
PRPF40A-204ENST00000450303 LRP10Q7Z4F1 713 aa22.15■■□□□ 1.14
PRPF40A-204ENST00000450303 MASTLQ96GX5 879 aa22.15■■□□□ 1.14
PRPF40A-204ENST00000450303 KIF3CO14782 793 aa22.14■■□□□ 1.13
PRPF40A-204ENST00000450303 NUTM1Q86Y26 1132 aa22.14■■□□□ 1.13
PRPF40A-204ENST00000450303 CNKSR1Q969H4 720 aa22.14■■□□□ 1.13
PRPF40A-204ENST00000450303 NFKBIEO00221 500 aa22.13■■□□□ 1.13
PRPF40A-204ENST00000450303 AIMP1Q12904 312 aaKnown RBP22.13■■□□□ 1.13
PRPF40A-204ENST00000450303 PRPF40BQ6NWY9 871 aaKnown RBP22.13■■□□□ 1.13
PRPF40A-204ENST00000450303 NMRK2Q9NPI5 230 aa22.13■■□□□ 1.13
PRPF40A-204ENST00000450303 UBN2Q6ZU65 1347 aa22.12■■□□□ 1.13
PRPF40A-204ENST00000450303 ERFEQ4G0M1 354 aa22.12■■□□□ 1.13
PRPF40A-204ENST00000450303 SUSD4Q5VX71 490 aa22.12■■□□□ 1.13
PRPF40A-204ENST00000450303 GIGYF2Q6Y7W6 1299 aaKnown RBP22.12■■□□□ 1.13
PRPF40A-204ENST00000450303 COPS6Q7L5N1 327 aa22.12■■□□□ 1.13
PRPF40A-204ENST00000450303 CFAP44Q96MT7 982 aa22.12■■□□□ 1.13
PRPF40A-204ENST00000450303 LMNB1P20700 586 aa22.11■■□□□ 1.13
PRPF40A-204ENST00000450303 ZNF34Q8IZ26 560 aa22.11■■□□□ 1.13
PRPF40A-204ENST00000450303 XAGE3Q8WTP9 111 aa22.11■■□□□ 1.13
PRPF40A-204ENST00000450303 NYXQ9GZU5 481 aa22.11■■□□□ 1.13
PRPF40A-204ENST00000450303 MBIPQ9NS73 344 aa22.11■■□□□ 1.13
PRPF40A-204ENST00000450303 KLRG2A4D1S0 409 aaPredicted RBP22.1■■□□□ 1.13
PRPF40A-204ENST00000450303 NPR1P16066 1061 aa22.1■■□□□ 1.13
PRPF40A-204ENST00000450303 FER1L6Q2WGJ9 1857 aa22.1■■□□□ 1.13
PRPF40A-204ENST00000450303 TNRC6CQ9HCJ0 1690 aaKnown RBP22.1■■□□□ 1.13
PRPF40A-204ENST00000450303 ABCC12Q96J65 1359 aa22.1■■□□□ 1.13
PRPF40A-204ENST00000450303 ARFGEF2Q9Y6D5 1785 aa22.1■■□□□ 1.13
PRPF40A-204ENST00000450303 HDGFL1Q5TGJ6 251 aa22.09■■□□□ 1.13
PRPF40A-204ENST00000450303 DDX21Q9NR30 783 aaKnown RBP eCLIP22.09■■□□□ 1.13
PRPF40A-204ENST00000450303 CHPF2Q9P2E5 772 aa22.09■■□□□ 1.13
PRPF40A-204ENST00000450303 ZNF853P0CG23 659 aa22.08■■□□□ 1.13
PRPF40A-204ENST00000450303 DUSP27Q5VZP5 1158 aa22.08■■□□□ 1.13
PRPF40A-204ENST00000450303 ELL2O00472 640 aaPredicted RBP22.06■■□□□ 1.12
PRPF40A-204ENST00000450303 NTSR2O95665 410 aa22.06■■□□□ 1.12
PRPF40A-204ENST00000450303 GNAI1P63096 354 aa22.06■■□□□ 1.12
PRPF40A-204ENST00000450303 OLFM4Q6UX06 510 aa22.06■■□□□ 1.12
PRPF40A-204ENST00000450303 C7orf43Q8WVR3 580 aa22.06■■□□□ 1.12
PRPF40A-204ENST00000450303 RRAGCQ9HB90 399 aa22.06■■□□□ 1.12
PRPF40A-204ENST00000450303 IFT57Q9NWB7 429 aa22.06■■□□□ 1.12
PRPF40A-204ENST00000450303 TIAM2Q8IVF5 1701 aa22.06■■□□□ 1.12
PRPF40A-204ENST00000450303 KDM2BQ8NHM5 1336 aa22.06■■□□□ 1.12
PRPF40A-204ENST00000450303 PPP1R42Q7Z4L9 355 aa22.05■■□□□ 1.12
PRPF40A-204ENST00000450303 ZNF428Q96B54 188 aa22.05■■□□□ 1.12
PRPF40A-204ENST00000450303 YTHDC1Q96MU7 727 aaKnown RBP22.05■■□□□ 1.12
PRPF40A-204ENST00000450303 TAOK3Q9H2K8 898 aa22.05■■□□□ 1.12
PRPF40A-204ENST00000450303 HOXB7P09629 217 aa22.04■■□□□ 1.12
PRPF40A-204ENST00000450303 CALD1Q05682 793 aaKnown RBP22.04■■□□□ 1.12
PRPF40A-204ENST00000450303 PARP10Q53GL7 1025 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms