RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 G3BP1Q13283 466 aaKnown RBP eCLIP12.6□□□□□ -0.39
CD44-210ENST00000434472 EVI5LQ96CN4 794 aa12.6□□□□□ -0.39
CD44-210ENST00000434472 NPHP3Q7Z494 1330 aa12.59□□□□□ -0.39
CD44-210ENST00000434472 PRPF40AO75400 957 aaKnown RBP12.59□□□□□ -0.39
CD44-210ENST00000434472 NCLP19338 710 aaKnown RBP12.59□□□□□ -0.39
CD44-210ENST00000434472 CCDC173Q0VFZ6 552 aa12.59□□□□□ -0.39
CD44-210ENST00000434472 PKP1Q13835 747 aa12.59□□□□□ -0.39
CD44-210ENST00000434472 PROSER3Q2NL68 480 aa12.59□□□□□ -0.39
CD44-210ENST00000434472 ZNF790Q6PG37 636 aa12.59□□□□□ -0.39
CD44-210ENST00000434472 IFNL2Q8IZJ0 200 aa12.59□□□□□ -0.39
CD44-210ENST00000434472 TRIM44Q96DX7 344 aaPredicted RBP12.59□□□□□ -0.39
CD44-210ENST00000434472 SNX14Q9Y5W7 946 aa12.59□□□□□ -0.39
CD44-210ENST00000434472 WDR33Q9C0J8 1336 aaKnown RBP12.59□□□□□ -0.39
CD44-210ENST00000434472 MAP4K4O95819 1239 aaPredicted RBP12.59□□□□□ -0.39
CD44-210ENST00000434472 PHKG2P15735 406 aa12.59□□□□□ -0.39
CD44-210ENST00000434472 RIC3Q7Z5B4 369 aa12.59□□□□□ -0.39
CD44-210ENST00000434472 NLRP2Q9NX02 1062 aa12.59□□□□□ -0.39
CD44-210ENST00000434472 ZC3H6P61129 1189 aaKnown RBP12.58□□□□□ -0.4
CD44-210ENST00000434472 PDIA6Q15084 440 aa12.58□□□□□ -0.4
CD44-210ENST00000434472 ZSCAN23Q3MJ62 389 aa12.58□□□□□ -0.4
CD44-210ENST00000434472 CAVIN1Q6NZI2 390 aaKnown RBP12.58□□□□□ -0.4
CD44-210ENST00000434472 SUCLG2Q96I99 432 aa12.58□□□□□ -0.4
CD44-210ENST00000434472 RRAGDQ9NQL2 400 aaPredicted RBP12.58□□□□□ -0.4
CD44-210ENST00000434472 SCN11AQ9UI33 1791 aa12.57□□□□□ -0.4
CD44-210ENST00000434472 CLCN1P35523 988 aa12.57□□□□□ -0.4
CD44-210ENST00000434472 NASPP49321 788 aaPredicted RBP12.57□□□□□ -0.4
CD44-210ENST00000434472 CWF19L2Q2TBE0 894 aaKnown RBP12.57□□□□□ -0.4
CD44-210ENST00000434472 ZSCAN31Q96LW9 406 aaPredicted RBP12.57□□□□□ -0.4
CD44-210ENST00000434472 PPP1R9BQ96SB3 815 aa12.57□□□□□ -0.4
CD44-210ENST00000434472 UPF3BQ9BZI7 483 aaKnown RBP12.57□□□□□ -0.4
CD44-210ENST00000434472 TM6SF1Q9BZW5 370 aa12.57□□□□□ -0.4
CD44-210ENST00000434472 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.57□□□□□ -0.4
CD44-210ENST00000434472 MRC1P22897 1456 aa12.57□□□□□ -0.4
CD44-210ENST00000434472 KDM6AO15550 1401 aaPredicted RBP12.57□□□□□ -0.4
CD44-210ENST00000434472 CWC27Q6UX04 472 aaKnown RBP12.56□□□□□ -0.4
CD44-210ENST00000434472 AACSQ86V21 672 aa12.56□□□□□ -0.4
CD44-210ENST00000434472 TTC5Q8N0Z6 440 aa12.56□□□□□ -0.4
CD44-210ENST00000434472 KCNB2Q92953 911 aa12.56□□□□□ -0.4
CD44-210ENST00000434472 SYAP1Q96A49 352 aaPredicted RBP12.56□□□□□ -0.4
CD44-210ENST00000434472 DCAF5Q96JK2 942 aa12.56□□□□□ -0.4
CD44-210ENST00000434472 TTC14Q96N46 770 aa12.56□□□□□ -0.4
CD44-210ENST00000434472 METTL22Q9BUU2 404 aaPredicted RBP12.56□□□□□ -0.4
CD44-210ENST00000434472 IL25Q9H293 177 aa12.56□□□□□ -0.4
CD44-210ENST00000434472 LIMCH1Q9UPQ0 1083 aa12.56□□□□□ -0.4
CD44-210ENST00000434472 RGPD5Q99666 1765 aa12.56□□□□□ -0.4
CD44-210ENST00000434472 PRAMEF22A3QJZ6 481 aa12.55□□□□□ -0.4
CD44-210ENST00000434472 SNRPA1P09661 255 aaKnown RBP12.55□□□□□ -0.4
CD44-210ENST00000434472 CSB-PGBD3P0DP91 1061 aa12.55□□□□□ -0.4
CD44-210ENST00000434472 AIMP1Q12904 312 aaKnown RBP12.55□□□□□ -0.4
CD44-210ENST00000434472 BICC1Q9H694 974 aaKnown RBP12.55□□□□□ -0.4
CD44-210ENST00000434472 COL15A1P39059 1388 aa12.55□□□□□ -0.4
CD44-210ENST00000434472 NEURL1BA8MQ27 555 aa12.55□□□□□ -0.4
CD44-210ENST00000434472 GCKRQ14397 625 aa12.55□□□□□ -0.4
CD44-210ENST00000434472 CADPS2Q86UW7 1296 aa12.55□□□□□ -0.4
CD44-210ENST00000434472 GPT2Q8TD30 523 aa12.55□□□□□ -0.4
CD44-210ENST00000434472 FMNL2Q96PY5 1086 aa12.55□□□□□ -0.4
CD44-210ENST00000434472 PA2G4Q9UQ80 394 aaKnown RBP12.55□□□□□ -0.4
CD44-210ENST00000434472 COL18A1P39060 1754 aa12.55□□□□□ -0.4
CD44-210ENST00000434472 TNS3Q68CZ2 1445 aa12.55□□□□□ -0.4
CD44-210ENST00000434472 TMEM94Q12767 1356 aa12.54□□□□□ -0.4
CD44-210ENST00000434472 SASH1O94885 1247 aa12.54□□□□□ -0.4
CD44-210ENST00000434472 IGKV5-2P06315 115 aa12.54□□□□□ -0.4
CD44-210ENST00000434472 PDIA4P13667 645 aaKnown RBP12.54□□□□□ -0.4
CD44-210ENST00000434472 ZKSCAN1P17029 563 aaPredicted RBP12.54□□□□□ -0.4
CD44-210ENST00000434472 VPS53Q5VIR6 699 aa12.54□□□□□ -0.4
CD44-210ENST00000434472 LRSAM1Q6UWE0 723 aa12.54□□□□□ -0.4
CD44-210ENST00000434472 NOL8Q76FK4 1167 aaKnown RBP12.54□□□□□ -0.4
CD44-210ENST00000434472 NFATC2IPQ8NCF5 419 aa12.54□□□□□ -0.4
CD44-210ENST00000434472 XAGE3Q8WTP9 111 aa12.54□□□□□ -0.4
CD44-210ENST00000434472 KAZALD1Q96I82 304 aa12.54□□□□□ -0.4
CD44-210ENST00000434472 SH2B1Q9NRF2 756 aaPredicted RBP12.54□□□□□ -0.4
CD44-210ENST00000434472 SNRKQ9NRH2 765 aa12.54□□□□□ -0.4
CD44-210ENST00000434472 CPDO75976 1380 aa12.54□□□□□ -0.4
CD44-210ENST00000434472 ERBB4Q15303 1308 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 ESPNB1AK53 854 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 AK2P54819 239 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 SLC39A6Q13433 755 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 ANKRD13DQ6ZTN6 518 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 COPS6Q7L5N1 327 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 KLHL34Q8N239 644 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 MYD88Q99836 296 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 ATP6V1DQ9Y5K8 247 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 CYP46A1Q9Y6A2 500 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 MEGF6O75095 1541 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 CCDC171Q6TFL3 1326 aa12.53□□□□□ -0.4
CD44-210ENST00000434472 C5P01031 1676 aa12.52□□□□□ -0.4
CD44-210ENST00000434472 MYL6BP14649 208 aa12.52□□□□□ -0.4
CD44-210ENST00000434472 PSMA5P28066 241 aa12.52□□□□□ -0.4
CD44-210ENST00000434472 RASEFQ8IZ41 740 aa12.52□□□□□ -0.4
CD44-210ENST00000434472 EAF2Q96CJ1 260 aaPredicted RBP12.52□□□□□ -0.4
CD44-210ENST00000434472 ZSWIM6Q9HCJ5 1215 aa12.52□□□□□ -0.4
CD44-210ENST00000434472 COPRSQ9NQ92 184 aa12.52□□□□□ -0.4
CD44-210ENST00000434472 PDRG1Q9NUG6 133 aa12.52□□□□□ -0.4
CD44-210ENST00000434472 SMC3Q9UQE7 1217 aa12.52□□□□□ -0.4
CD44-210ENST00000434472 PKD1L3Q7Z443 1732 aa12.52□□□□□ -0.41
CD44-210ENST00000434472 PHF14O94880 888 aa12.51□□□□□ -0.41
CD44-210ENST00000434472 CASTP20810 708 aaKnown RBP12.51□□□□□ -0.41
CD44-210ENST00000434472 CSPP1Q1MSJ5 1256 aa12.51□□□□□ -0.41
CD44-210ENST00000434472 RNF20Q5VTR2 975 aa12.51□□□□□ -0.41
CD44-210ENST00000434472 FOXD4L5Q5VV16 416 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms