RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 LRRC4CQ9HCJ2 640 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 TMOD4Q9NZQ9 345 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 RALGAPBQ86X10 1494 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 ZEB2O60315 1214 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 TGFB2P61812 414 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 DPP9Q86TI2 863 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 USP48Q86UV5 1035 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 HELBQ8NG08 1087 aaPredicted RBP3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 FHAD1B1AJZ9 1412 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 ARHGEF10O15013 1369 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 EIF3AQ14152 1382 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 NTRK1P04629 796 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 IL2RBP14784 551 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 FOSBP53539 338 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 TNFAIP2Q03169 654 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 TBC1D8BQ0IIM8 1120 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 MTMR3Q13615 1198 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 KCTD2Q14681 263 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 ARRDC4Q8NCT1 418 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 HAUS7Q99871 368 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 SLC32A1Q9H598 525 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 COLQQ9Y215 455 aaPredicted RBP3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 KIF15Q9NS87 1388 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 ITGB8P26012 769 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 INHBEP58166 350 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 ATP2B2Q01814 1243 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 SFSWAPQ12872 951 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 CC2D2BQ6DHV5 1058 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 NSUN7Q8NE18 718 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 STAP2Q9UGK3 403 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 EDARQ9UNE0 448 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 UACAQ9BZF9 1416 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 MANSC4A6NHS7 340 aaPredicted RBP3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 B4DLN1 442 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 GYS1P13807 737 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 GBP1P32455 592 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 MRPL12P52815 198 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 APOBRQ0VD83 1088 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 PLS1Q14651 629 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 PUM1Q14671 1186 aaKnown RBP eCLIP3.47□□□□□ -1.852e-6■□□□□ 8.9
CCDC88A-205ENST00000426576 DPP8Q6V1X1 898 aaPredicted RBP3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 KRT25Q7Z3Z0 450 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 CRACR2BQ8N4Y2 399 aaPredicted RBP3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 AKT1S1Q96B36 256 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 CCDC43Q96MW1 224 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 SMC4Q9NTJ3 1288 aa3.47□□□□□ -1.85
CCDC88A-205ENST00000426576 PCF11O94913 1555 aaKnown RBP3.46□□□□□ -1.85
CCDC88A-205ENST00000426576 WNK1Q9H4A3 2382 aa3.46□□□□□ -1.85
CCDC88A-205ENST00000426576 GOLGA3Q08378 1498 aa3.46□□□□□ -1.85
CCDC88A-205ENST00000426576 ABCC10Q5T3U5 1492 aa3.46□□□□□ -1.85
CCDC88A-205ENST00000426576 H0YGN5 161 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 RRP8O43159 456 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 NDUFV1P49821 464 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 PNMA3Q9UL41 463 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 HPS5Q9UPZ3 1129 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 DCAF15Q66K64 600 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 LDHAL6AQ6ZMR3 332 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 GADL1Q6ZQY3 521 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 LEO1Q8WVC0 666 aaPredicted RBP3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 GTF3C6Q969F1 213 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 REPIN1Q9BWE0 567 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 KIAA0556O60303 1618 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 TTC28Q96AY4 2481 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 DHX16O60231 1041 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 DDNO94850 711 aaPredicted RBP3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 CAMTA2O94983 1202 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 HSPA8P11142 646 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 BROXQ5VW32 411 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 CES5AQ6NT32 575 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 HFE2Q6ZVN8 426 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 ATCAYQ86WG3 371 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 HDDC3Q8N4P3 179 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 PROCA1Q8NCQ7 364 aaPredicted RBP3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 TMEM39AQ9NV64 488 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 CLDND1Q9NY35 253 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 ITGB1BP2Q9UKP3 347 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 USP31Q70CQ4 1352 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 CNTRLQ7Z7A1 2325 aa3.46□□□□□ -1.86
CCDC88A-205ENST00000426576 SOWAHBA6NEL2 793 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 C19orf67A6NJJ6 358 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 UAP1L1Q3KQV9 507 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 CCDC144BQ3MJ40 725 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 COG3Q96JB2 828 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 TERF2IPQ9NYB0 399 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 PUF60Q9UHX1 559 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 NOC2LQ9Y3T9 749 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 LRRC9Q6ZRR7 1453 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 KINO60870 393 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 MAP2K5Q13163 448 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 PPP2R2DQ66LE6 453 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 DCBLD2Q96PD2 775 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 SYNDIG1Q9H7V2 258 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 CNPY2Q9Y2B0 182 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 CCDC7Q96M83 1385 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 SMG6Q86US8 1419 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 LTBP4Q8N2S1 1624 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 TSPOAP1O95153 1857 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 EGFRP00533 1210 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 BRINP3Q76B58 766 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms