RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 COPS6Q7L5N1 327 aa21.77■■□□□ 1.08
COL7A1-202ENST00000422991 MRPL50Q8N5N7 158 aaKnown RBP21.77■■□□□ 1.08
COL7A1-202ENST00000422991 SRP68Q9UHB9 627 aaKnown RBP21.77■■□□□ 1.08
COL7A1-202ENST00000422991 TBC1D2BQ9UPU7 963 aa21.77■■□□□ 1.08
COL7A1-202ENST00000422991 AIMP1Q12904 312 aaKnown RBP21.76■■□□□ 1.07
COL7A1-202ENST00000422991 KIF6Q6ZMV9 814 aa21.76■■□□□ 1.07
COL7A1-202ENST00000422991 G2E3Q7L622 706 aa21.76■■□□□ 1.07
COL7A1-202ENST00000422991 BCL2L13Q9BXK5 485 aa21.76■■□□□ 1.07
COL7A1-202ENST00000422991 SMC4Q9NTJ3 1288 aa21.76■■□□□ 1.07
COL7A1-202ENST00000422991 ATF5Q9Y2D1 282 aaPredicted RBP21.76■■□□□ 1.07
COL7A1-202ENST00000422991 MAP3K15Q6ZN16 1313 aa21.76■■□□□ 1.07
COL7A1-202ENST00000422991 ZPR1O75312 459 aa21.75■■□□□ 1.07
COL7A1-202ENST00000422991 PTGER2P43116 358 aa21.74■■□□□ 1.07
COL7A1-202ENST00000422991 BRPF1P55201 1214 aaPredicted RBP21.74■■□□□ 1.07
COL7A1-202ENST00000422991 FLIIQ13045 1269 aa21.74■■□□□ 1.07
COL7A1-202ENST00000422991 USPL1Q5W0Q7 1092 aa21.74■■□□□ 1.07
COL7A1-202ENST00000422991 SLC16A10Q8TF71 515 aa21.74■■□□□ 1.07
COL7A1-202ENST00000422991 ARXQ96QS3 562 aa21.74■■□□□ 1.07
COL7A1-202ENST00000422991 BCL2L12Q9HB09 334 aa21.74■■□□□ 1.07
COL7A1-202ENST00000422991 ERVV-1B6SEH8 477 aa21.73■■□□□ 1.07
COL7A1-202ENST00000422991 RGL2O15211 777 aa21.73■■□□□ 1.07
COL7A1-202ENST00000422991 GYS1P13807 737 aa21.73■■□□□ 1.07
COL7A1-202ENST00000422991 ZBTB3Q9H5J0 574 aa21.73■■□□□ 1.07
COL7A1-202ENST00000422991 PLBD2Q8NHP8 589 aa21.72■■□□□ 1.07
COL7A1-202ENST00000422991 ADCY9O60503 1353 aa21.72■■□□□ 1.07
COL7A1-202ENST00000422991 ANKRD13DQ6ZTN6 518 aa21.71■■□□□ 1.07
COL7A1-202ENST00000422991 ATP10DQ9P241 1426 aa21.71■■□□□ 1.07
COL7A1-202ENST00000422991 N4BP2Q86UW6 1770 aaPredicted RBP21.7■■□□□ 1.06
COL7A1-202ENST00000422991 BCAR3O75815 825 aa21.7■■□□□ 1.06
COL7A1-202ENST00000422991 DDX58O95786 925 aaKnown RBP21.7■■□□□ 1.06
COL7A1-202ENST00000422991 FKBP5Q13451 457 aaPredicted RBP21.7■■□□□ 1.06
COL7A1-202ENST00000422991 FKBP8Q14318 412 aa21.7■■□□□ 1.06
COL7A1-202ENST00000422991 HLFQ16534 295 aa21.7■■□□□ 1.06
COL7A1-202ENST00000422991 SGIP1Q9BQI5 828 aa21.7■■□□□ 1.06
COL7A1-202ENST00000422991 RCAN3Q9UKA8 241 aa21.7■■□□□ 1.06
COL7A1-202ENST00000422991 ZNF652Q9Y2D9 606 aa21.7■■□□□ 1.06
COL7A1-202ENST00000422991 KIF16BQ96L93 1317 aa21.7■■□□□ 1.06
COL7A1-202ENST00000422991 MSL1Q68DK7 614 aa21.69■■□□□ 1.06
COL7A1-202ENST00000422991 CLEC4GQ6UXB4 293 aa21.69■■□□□ 1.06
COL7A1-202ENST00000422991 GIGYF2Q6Y7W6 1299 aaKnown RBP21.69■■□□□ 1.06
COL7A1-202ENST00000422991 PTPRCP08575 1304 aa21.69■■□□□ 1.06
COL7A1-202ENST00000422991 KSR2Q6VAB6 950 aa21.68■■□□□ 1.06
COL7A1-202ENST00000422991 NLGN1Q8N2Q7 840 aa21.68■■□□□ 1.06
COL7A1-202ENST00000422991 AFDNP55196 1824 aaKnown RBP21.68■■□□□ 1.06
COL7A1-202ENST00000422991 PI4KAP2A4QPH2 592 aa21.67■■□□□ 1.06
COL7A1-202ENST00000422991 RIC3Q7Z5B4 369 aa21.67■■□□□ 1.06
COL7A1-202ENST00000422991 PI4KAP1Q8N8J0 262 aa21.67■■□□□ 1.06
COL7A1-202ENST00000422991 TBC1D9BQ66K14 1250 aa21.66■■□□□ 1.06
COL7A1-202ENST00000422991 MAP3K2Q9Y2U5 619 aa21.66■■□□□ 1.06
COL7A1-202ENST00000422991 NRXN2Q9P2S2 1712 aa21.66■■□□□ 1.06
COL7A1-202ENST00000422991 PXDNLA1KZ92 1463 aa21.65■■□□□ 1.06
COL7A1-202ENST00000422991 NOB1Q9ULX3 412 aaKnown RBP21.65■■□□□ 1.06
COL7A1-202ENST00000422991 POLD1P28340 1107 aa21.64■■□□□ 1.05
COL7A1-202ENST00000422991 TM4SF1P30408 202 aa21.64■■□□□ 1.05
COL7A1-202ENST00000422991 NFIXQ14938 502 aa21.64■■□□□ 1.05
COL7A1-202ENST00000422991 HSP90AB3PQ58FF7 597 aa21.64■■□□□ 1.05
COL7A1-202ENST00000422991 DNAAF4Q8WXU2 420 aa21.64■■□□□ 1.05
COL7A1-202ENST00000422991 METTL22Q9BUU2 404 aaPredicted RBP21.64■■□□□ 1.05
COL7A1-202ENST00000422991 F6X3S4 739 aa21.63■■□□□ 1.05
COL7A1-202ENST00000422991 TCIRG1Q13488 830 aa21.63■■□□□ 1.05
COL7A1-202ENST00000422991 ZNF34Q8IZ26 560 aa21.63■■□□□ 1.05
COL7A1-202ENST00000422991 ARHGAP45Q92619 1136 aa21.63■■□□□ 1.05
COL7A1-202ENST00000422991 CARMIL3Q8ND23 1372 aa21.62■■□□□ 1.05
COL7A1-202ENST00000422991 UBN2Q6ZU65 1347 aa21.62■■□□□ 1.05
COL7A1-202ENST00000422991 MMP10P09238 476 aa21.62■■□□□ 1.05
COL7A1-202ENST00000422991 DDR1Q08345 913 aa21.62■■□□□ 1.05
COL7A1-202ENST00000422991 BICDL1Q6ZP65 573 aa21.62■■□□□ 1.05
COL7A1-202ENST00000422991 NIP7Q9Y221 180 aaKnown RBP eCLIP21.62■■□□□ 1.05
COL7A1-202ENST00000422991 GPTP24298 496 aa21.61■■□□□ 1.05
COL7A1-202ENST00000422991 FRAT1Q92837 279 aaPredicted RBP21.61■■□□□ 1.05
COL7A1-202ENST00000422991 SETDB2Q96T68 719 aa21.61■■□□□ 1.05
COL7A1-202ENST00000422991 MYD88Q99836 296 aa21.61■■□□□ 1.05
COL7A1-202ENST00000422991 ISCA1Q9BUE6 129 aa21.61■■□□□ 1.05
COL7A1-202ENST00000422991 API5Q9BZZ5 524 aaKnown RBP21.61■■□□□ 1.05
COL7A1-202ENST00000422991 FHDC1Q9C0D6 1143 aaPredicted RBP21.61■■□□□ 1.05
COL7A1-202ENST00000422991 POLRMTO00411 1230 aaKnown RBP21.6■■□□□ 1.05
COL7A1-202ENST00000422991 IPO8O15397 1037 aaKnown RBP21.6■■□□□ 1.05
COL7A1-202ENST00000422991 IBTKQ9P2D0 1353 aaPredicted RBP21.6■■□□□ 1.05
COL7A1-202ENST00000422991 DCAF8L1A6NGE4 600 aa21.59■■□□□ 1.05
COL7A1-202ENST00000422991 ATP5J2-PTCD1G3V325 749 aa21.59■■□□□ 1.05
COL7A1-202ENST00000422991 IGKV5-2P06315 115 aa21.59■■□□□ 1.05
COL7A1-202ENST00000422991 TRIM27P14373 513 aa21.59■■□□□ 1.05
COL7A1-202ENST00000422991 NEXNQ0ZGT2 675 aa21.59■■□□□ 1.05
COL7A1-202ENST00000422991 TRIM28Q13263 835 aaKnown RBP21.59■■□□□ 1.05
COL7A1-202ENST00000422991 ZKSCAN2Q63HK3 967 aa21.59■■□□□ 1.05
COL7A1-202ENST00000422991 ATF7IPQ6VMQ6 1270 aa21.59■■□□□ 1.05
COL7A1-202ENST00000422991 SYT17Q9BSW7 474 aa21.59■■□□□ 1.05
COL7A1-202ENST00000422991 ABCC4O15439 1325 aa21.58■■□□□ 1.05
COL7A1-202ENST00000422991 PARP10Q53GL7 1025 aa21.58■■□□□ 1.05
COL7A1-202ENST00000422991 NLRP10Q86W26 655 aa21.58■■□□□ 1.05
COL7A1-202ENST00000422991 PARP3Q9Y6F1 533 aa21.58■■□□□ 1.05
COL7A1-202ENST00000422991 LAMB2P55268 1798 aa21.57■■□□□ 1.04
COL7A1-202ENST00000422991 BEND3Q5T5X7 828 aa21.57■■□□□ 1.04
COL7A1-202ENST00000422991 LINS1Q8NG48 757 aa21.57■■□□□ 1.04
COL7A1-202ENST00000422991 TNNQ9UQP3 1299 aa21.57■■□□□ 1.04
COL7A1-202ENST00000422991 KIF13BQ9NQT8 1826 aa21.57■■□□□ 1.04
COL7A1-202ENST00000422991 NEURL1BA8MQ27 555 aa21.56■■□□□ 1.04
COL7A1-202ENST00000422991 CWF19L2Q2TBE0 894 aaKnown RBP21.56■■□□□ 1.04
COL7A1-202ENST00000422991 SLC4A10Q6U841 1118 aa21.56■■□□□ 1.04
COL7A1-202ENST00000422991 CCDC191Q8NCU4 936 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms