RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 KIF1BPQ96EK5 621 aa11.94□□□□□ -0.5
SS18-203ENST00000415083 TLR7Q9NYK1 1049 aaKnown RBP11.94□□□□□ -0.5
SS18-203ENST00000415083 EPB41L2O43491 1005 aaKnown RBP11.93□□□□□ -0.5
SS18-203ENST00000415083 SASH1O94885 1247 aa11.93□□□□□ -0.5
SS18-203ENST00000415083 JARID2Q92833 1246 aaPredicted RBP11.93□□□□□ -0.5
SS18-203ENST00000415083 COL15A1P39059 1388 aa11.93□□□□□ -0.5
SS18-203ENST00000415083 MPNDQ8N594 471 aa11.93□□□□□ -0.5
SS18-203ENST00000415083 AXIN2Q9Y2T1 843 aa11.93□□□□□ -0.5
SS18-203ENST00000415083 NPHP4O75161 1426 aaPredicted RBP11.93□□□□□ -0.5
SS18-203ENST00000415083 MBD3O95983 291 aa11.93□□□□□ -0.5
SS18-203ENST00000415083 SLIT3O75094 1523 aa11.93□□□□□ -0.5
SS18-203ENST00000415083 MCCP23508 829 aa11.92□□□□□ -0.5
SS18-203ENST00000415083 NECTIN1Q15223 517 aa11.92□□□□□ -0.5
SS18-203ENST00000415083 CHGBP05060 677 aa11.92□□□□□ -0.5
SS18-203ENST00000415083 ZSCAN22P10073 491 aaPredicted RBP11.92□□□□□ -0.5
SS18-203ENST00000415083 FAM227BQ96M60 508 aa11.92□□□□□ -0.5
SS18-203ENST00000415083 PHF8Q9UPP1 1060 aa11.92□□□□□ -0.5
SS18-203ENST00000415083 GIGYF1O75420 1035 aaPredicted RBP11.92□□□□□ -0.5
SS18-203ENST00000415083 SUCLG2Q96I99 432 aa11.92□□□□□ -0.5
SS18-203ENST00000415083 MAP3K2Q9Y2U5 619 aa11.92□□□□□ -0.5
SS18-203ENST00000415083 GLI3P10071 1580 aa11.91□□□□□ -0.5
SS18-203ENST00000415083 MRC1P22897 1456 aa11.91□□□□□ -0.5
SS18-203ENST00000415083 RNMTO43148 476 aaKnown RBP11.91□□□□□ -0.5
SS18-203ENST00000415083 ME3Q16798 604 aa11.91□□□□□ -0.5
SS18-203ENST00000415083 ZMYND15Q9H091 742 aa11.91□□□□□ -0.5
SS18-203ENST00000415083 TSPY26PQ9H489 355 aa11.91□□□□□ -0.5
SS18-203ENST00000415083 MTMR6Q9Y217 621 aa11.91□□□□□ -0.5
SS18-203ENST00000415083 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.91□□□□□ -0.54e-6■■■□□ 17.6
SS18-203ENST00000415083 BTBD11A6QL63 1104 aa11.91□□□□□ -0.5
SS18-203ENST00000415083 RRP9O43818 475 aaKnown RBP11.91□□□□□ -0.5
SS18-203ENST00000415083 HOXB7P09629 217 aa11.91□□□□□ -0.5
SS18-203ENST00000415083 CASTP20810 708 aaKnown RBP11.91□□□□□ -0.5
SS18-203ENST00000415083 ZNF830Q96NB3 372 aaPredicted RBP11.91□□□□□ -0.5
SS18-203ENST00000415083 WDR33Q9C0J8 1336 aaKnown RBP11.91□□□□□ -0.5
SS18-203ENST00000415083 EAF2Q96CJ1 260 aaPredicted RBP11.91□□□□□ -0.5
SS18-203ENST00000415083 ZSWIM6Q9HCJ5 1215 aa11.91□□□□□ -0.5
SS18-203ENST00000415083 R3HCC1Q9Y3T6 440 aaKnown RBP11.91□□□□□ -0.5
SS18-203ENST00000415083 SCN11AQ9UI33 1791 aa11.9□□□□□ -0.5
SS18-203ENST00000415083 ZBTB7CA1YPR0 619 aa11.9□□□□□ -0.5
SS18-203ENST00000415083 STX6O43752 255 aa11.9□□□□□ -0.5
SS18-203ENST00000415083 F13A1P00488 732 aa11.9□□□□□ -0.5
SS18-203ENST00000415083 IGKV5-2P06315 115 aa11.9□□□□□ -0.5
SS18-203ENST00000415083 TPM2P07951 284 aa11.9□□□□□ -0.5
SS18-203ENST00000415083 KLHDC4Q8TBB5 520 aa11.9□□□□□ -0.5
SS18-203ENST00000415083 LIMCH1Q9UPQ0 1083 aa11.9□□□□□ -0.5
SS18-203ENST00000415083 AKAP4Q5JQC9 854 aa11.9□□□□□ -0.5
SS18-203ENST00000415083 EPHA10Q5JZY3 1008 aa11.9□□□□□ -0.5
SS18-203ENST00000415083 PRPF40BQ6NWY9 871 aaKnown RBP11.9□□□□□ -0.5
SS18-203ENST00000415083 C17orf53Q8N3J3 647 aaPredicted RBP11.9□□□□□ -0.5
SS18-203ENST00000415083 TPCN1Q9ULQ1 816 aa11.9□□□□□ -0.5
SS18-203ENST00000415083 UTYO14607 1347 aa11.9□□□□□ -0.51
SS18-203ENST00000415083 TTC41PQ6P2S7 1318 aa11.9□□□□□ -0.51
SS18-203ENST00000415083 LAMA4Q16363 1823 aa11.9□□□□□ -0.51
SS18-203ENST00000415083 GLIPR1L2Q4G1C9 344 aa11.89□□□□□ -0.51
SS18-203ENST00000415083 CCDC83Q8IWF9 413 aa11.89□□□□□ -0.51
SS18-203ENST00000415083 CNTROBQ8N137 903 aa11.89□□□□□ -0.51
SS18-203ENST00000415083 THEMISQ8N1K5 641 aaPredicted RBP11.89□□□□□ -0.51
SS18-203ENST00000415083 NECAB1Q8N987 351 aa11.89□□□□□ -0.51
SS18-203ENST00000415083 MSNP26038 577 aaKnown RBP11.89□□□□□ -0.51
SS18-203ENST00000415083 RBM10P98175 930 aaKnown RBP11.89□□□□□ -0.51
SS18-203ENST00000415083 DNM1Q05193 864 aaKnown RBP11.89□□□□□ -0.51
SS18-203ENST00000415083 TPRNQ4KMQ1 711 aa11.89□□□□□ -0.51
SS18-203ENST00000415083 ZNF530Q6P9A1 599 aaPredicted RBP11.89□□□□□ -0.51
SS18-203ENST00000415083 LRP10Q7Z4F1 713 aa11.89□□□□□ -0.51
SS18-203ENST00000415083 C14orf37Q86TY3 774 aa11.89□□□□□ -0.51
SS18-203ENST00000415083 ARID3AQ99856 593 aa11.89□□□□□ -0.51
SS18-203ENST00000415083 SNRKQ9NRH2 765 aa11.89□□□□□ -0.51
SS18-203ENST00000415083 JCADQ9P266 1359 aa11.88□□□□□ -0.51
SS18-203ENST00000415083 A0A0D9SFI3 127 aa11.88□□□□□ -0.51
SS18-203ENST00000415083 GJB2P29033 226 aa11.88□□□□□ -0.51
SS18-203ENST00000415083 ORAI2Q96SN7 254 aa11.88□□□□□ -0.51
SS18-203ENST00000415083 BICC1Q9H694 974 aaKnown RBP11.88□□□□□ -0.51
SS18-203ENST00000415083 HCLS1P14317 486 aaPredicted RBP11.88□□□□□ -0.51
SS18-203ENST00000415083 ARHGEF25Q86VW2 580 aa11.88□□□□□ -0.51
SS18-203ENST00000415083 EDC3Q96F86 508 aaKnown RBP11.88□□□□□ -0.51
SS18-203ENST00000415083 USP25Q9UHP3 1055 aa11.88□□□□□ -0.51
SS18-203ENST00000415083 FAM173BQ6P4H8 233 aa11.88□□□□□ -0.51
SS18-203ENST00000415083 ZNF589Q86UQ0 364 aaPredicted RBP11.88□□□□□ -0.51
SS18-203ENST00000415083 PKNOX2Q96KN3 472 aa11.88□□□□□ -0.51
SS18-203ENST00000415083 TCEANC2Q96MN5 208 aa11.88□□□□□ -0.51
SS18-203ENST00000415083 JAKMIP1Q96N16 626 aaKnown RBP11.88□□□□□ -0.51
SS18-203ENST00000415083 KDM6AO15550 1401 aaPredicted RBP11.87□□□□□ -0.51
SS18-203ENST00000415083 GLRX3O76003 335 aaKnown RBP11.87□□□□□ -0.51
SS18-203ENST00000415083 NMIQ13287 307 aaPredicted RBP11.87□□□□□ -0.51
SS18-203ENST00000415083 KSR2Q6VAB6 950 aa11.87□□□□□ -0.51
SS18-203ENST00000415083 ANP32BQ92688 251 aaKnown RBP11.87□□□□□ -0.51
SS18-203ENST00000415083 ECHDC1Q9NTX5 307 aa11.87□□□□□ -0.51
SS18-203ENST00000415083 GIMAP6Q6P9H5 292 aa11.87□□□□□ -0.51
SS18-203ENST00000415083 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.87□□□□□ -0.51
SS18-203ENST00000415083 MAP4K1Q92918 833 aa11.87□□□□□ -0.51
SS18-203ENST00000415083 CCDC8Q9H0W5 538 aaPredicted RBP11.87□□□□□ -0.51
SS18-203ENST00000415083 CCDC171Q6TFL3 1326 aa11.87□□□□□ -0.51
SS18-203ENST00000415083 MED23Q9ULK4 1368 aa11.87□□□□□ -0.51
SS18-203ENST00000415083 OVOS2A0A0G2JMS6 1433 aa11.87□□□□□ -0.51
SS18-203ENST00000415083 TERF1P54274 439 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 VPS53Q5VIR6 699 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 DBF4Q9UBU7 674 aaPredicted RBP11.86□□□□□ -0.51
SS18-203ENST00000415083 AFDNP55196 1824 aaKnown RBP11.86□□□□□ -0.51
SS18-203ENST00000415083 ZNF142P52746 1687 aaPredicted RBP11.86□□□□□ -0.51
SS18-203ENST00000415083 FIBPO43427 364 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 183.8 ms