RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 NBPF10Q6P3W6 841 aaKnown RBP25.4■■□□□ 1.66
USP39-203ENST00000409470 NBPF15Q8N660 670 aa25.4■■□□□ 1.66
USP39-203ENST00000409470 RILPL2Q969X0 211 aa25.4■■□□□ 1.66
USP39-203ENST00000409470 KIF2CQ99661 725 aa25.4■■□□□ 1.66
USP39-203ENST00000409470 REC8O95072 547 aa25.39■■□□□ 1.65
USP39-203ENST00000409470 USP26Q9BXU7 913 aa25.39■■□□□ 1.65
USP39-203ENST00000409470 PA2G4Q9UQ80 394 aaKnown RBP25.39■■□□□ 1.65
USP39-203ENST00000409470 TNS2Q63HR2 1409 aa25.38■■□□□ 1.65
USP39-203ENST00000409470 COL16A1Q07092 1604 aaPredicted RBP25.38■■□□□ 1.65
USP39-203ENST00000409470 TOGARAM1Q9Y4F4 1720 aa25.38■■□□□ 1.65
USP39-203ENST00000409470 ERC2O15083 957 aa25.38■■□□□ 1.65
USP39-203ENST00000409470 ERC1Q8IUD2 1116 aa25.38■■□□□ 1.65
USP39-203ENST00000409470 SNX21Q969T3 373 aa25.38■■□□□ 1.65
USP39-203ENST00000409470 A1BGP04217 495 aa25.37■■□□□ 1.65
USP39-203ENST00000409470 NFKBIBQ15653 356 aa25.37■■□□□ 1.65
USP39-203ENST00000409470 SPRYD3Q8NCJ5 442 aa25.37■■□□□ 1.65
USP39-203ENST00000409470 ARFGEF2Q9Y6D5 1785 aa25.37■■□□□ 1.65
USP39-203ENST00000409470 TUBGCP6Q96RT7 1819 aa25.37■■□□□ 1.65
USP39-203ENST00000409470 DISP2A7MBM2 1401 aa25.36■■□□□ 1.65
USP39-203ENST00000409470 ATP5J2-PTCD1G3V325 749 aa25.36■■□□□ 1.65
USP39-203ENST00000409470 CLASRPQ8N2M8 674 aaKnown RBP25.36■■□□□ 1.65
USP39-203ENST00000409470 AFDNP55196 1824 aaKnown RBP25.35■■□□□ 1.65
USP39-203ENST00000409470 ADAMTS2O95450 1211 aa25.34■■□□□ 1.65
USP39-203ENST00000409470 G3BP1Q13283 466 aaKnown RBP eCLIP25.34■■□□□ 1.65
USP39-203ENST00000409470 PIGBQ92521 554 aa25.34■■□□□ 1.65
USP39-203ENST00000409470 ANTXR1Q9H6X2 564 aa25.34■■□□□ 1.65
USP39-203ENST00000409470 TTLL7Q6ZT98 887 aa25.34■■□□□ 1.65
USP39-203ENST00000409470 PHLPP1O60346 1717 aa25.34■■□□□ 1.65
USP39-203ENST00000409470 EXOC5O00471 708 aa25.33■■□□□ 1.65
USP39-203ENST00000409470 UBE3BQ7Z3V4 1068 aa25.33■■□□□ 1.65
USP39-203ENST00000409470 PI4K2BQ8TCG2 481 aa25.33■■□□□ 1.65
USP39-203ENST00000409470 JARID2Q92833 1246 aaPredicted RBP25.33■■□□□ 1.65
USP39-203ENST00000409470 A0A087WZG4 1122 aa25.32■■□□□ 1.64
USP39-203ENST00000409470 UNC5CLQ8IV45 518 aa25.32■■□□□ 1.64
USP39-203ENST00000409470 ASAP1Q9ULH1 1129 aa25.32■■□□□ 1.64
USP39-203ENST00000409470 CHMLP26374 656 aa25.32■■□□□ 1.64
USP39-203ENST00000409470 EPHA10Q5JZY3 1008 aa25.32■■□□□ 1.64
USP39-203ENST00000409470 ESYT1Q9BSJ8 1104 aa25.32■■□□□ 1.64
USP39-203ENST00000409470 RBM42Q9BTD8 480 aaKnown RBP25.32■■□□□ 1.64
USP39-203ENST00000409470 IFIT2P09913 472 aaKnown RBP25.3■■□□□ 1.64
USP39-203ENST00000409470 TTC41PQ6P2S7 1318 aa25.3■■□□□ 1.64
USP39-203ENST00000409470 PLCH1Q4KWH8 1693 aa25.3■■□□□ 1.64
USP39-203ENST00000409470 MAP4K4O95819 1239 aaPredicted RBP25.3■■□□□ 1.64
USP39-203ENST00000409470 SIL1Q9H173 461 aa25.3■■□□□ 1.64
USP39-203ENST00000409470 USP42Q9H9J4 1324 aaKnown RBP25.3■■□□□ 1.64
USP39-203ENST00000409470 PIP4K2BP78356 416 aa25.29■■□□□ 1.64
USP39-203ENST00000409470 RABEP1Q15276 862 aa25.29■■□□□ 1.64
USP39-203ENST00000409470 GPATCH3Q96I76 525 aa25.29■■□□□ 1.64
USP39-203ENST00000409470 TEX13AQ9BXU3 409 aaPredicted RBP25.29■■□□□ 1.64
USP39-203ENST00000409470 ATG3Q9NT62 314 aa25.29■■□□□ 1.64
USP39-203ENST00000409470 VSIG10Q8N0Z9 540 aa25.29■■□□□ 1.64
USP39-203ENST00000409470 ZBTB3Q9H5J0 574 aa25.29■■□□□ 1.64
USP39-203ENST00000409470 AACSQ86V21 672 aa25.28■■□□□ 1.64
USP39-203ENST00000409470 CNTROBQ8N137 903 aa25.28■■□□□ 1.64
USP39-203ENST00000409470 GLRX3O76003 335 aaKnown RBP25.27■■□□□ 1.64
USP39-203ENST00000409470 SASH1O94885 1247 aa25.27■■□□□ 1.64
USP39-203ENST00000409470 ITGB4P16144 1822 aa25.27■■□□□ 1.64
USP39-203ENST00000409470 COL15A1P39059 1388 aa25.27■■□□□ 1.64
USP39-203ENST00000409470 NUTM2BA6NNL0 878 aaPredicted RBP25.27■■□□□ 1.64
USP39-203ENST00000409470 NUTM2EB1AL46 878 aaPredicted RBP25.27■■□□□ 1.64
USP39-203ENST00000409470 TOM1O60784 492 aa25.27■■□□□ 1.64
USP39-203ENST00000409470 NUTM2AQ8IVF1 878 aaPredicted RBP25.27■■□□□ 1.64
USP39-203ENST00000409470 DNAJC10Q8IXB1 793 aa25.27■■□□□ 1.64
USP39-203ENST00000409470 KLHDC4Q8TBB5 520 aa25.27■■□□□ 1.64
USP39-203ENST00000409470 CWC25Q9NXE8 425 aaPredicted RBP25.27■■□□□ 1.64
USP39-203ENST00000409470 ECHDC1Q9NTX5 307 aa25.26■■□□□ 1.63
USP39-203ENST00000409470 ZNF330Q9Y3S2 320 aaPredicted RBP25.26■■□□□ 1.63
USP39-203ENST00000409470 NUP188Q5SRE5 1749 aa25.26■■□□□ 1.63
USP39-203ENST00000409470 FRAT2O75474 233 aaPredicted RBP25.25■■□□□ 1.63
USP39-203ENST00000409470 CD2BP2O95400 341 aaKnown RBP25.25■■□□□ 1.63
USP39-203ENST00000409470 SYTL4Q96C24 671 aaPredicted RBP25.25■■□□□ 1.63
USP39-203ENST00000409470 K7ELQ4 463 aaPredicted RBP25.25■■□□□ 1.63
USP39-203ENST00000409470 STARD3NLO95772 234 aa25.25■■□□□ 1.63
USP39-203ENST00000409470 CASP7P55210 303 aa25.25■■□□□ 1.63
USP39-203ENST00000409470 RABL6Q3YEC7 729 aaPredicted RBP25.25■■□□□ 1.63
USP39-203ENST00000409470 CDCA7Q9BWT1 371 aaPredicted RBP25.25■■□□□ 1.63
USP39-203ENST00000409470 BCL9O00512 1426 aa25.24■■□□□ 1.63
USP39-203ENST00000409470 AK9Q5TCS8 1911 aa25.24■■□□□ 1.63
USP39-203ENST00000409470 ANO2Q9NQ90 1003 aa25.24■■□□□ 1.63
USP39-203ENST00000409470 KAT6BQ8WYB5 2073 aa25.24■■□□□ 1.63
USP39-203ENST00000409470 WNK3Q9BYP7 1800 aa25.24■■□□□ 1.63
USP39-203ENST00000409470 H7C1W4 665 aa25.24■■□□□ 1.63
USP39-203ENST00000409470 LRP6O75581 1613 aa25.23■■□□□ 1.63
USP39-203ENST00000409470 COPRSQ9NQ92 184 aa25.23■■□□□ 1.63
USP39-203ENST00000409470 CHMP5Q9NZZ3 219 aa25.23■■□□□ 1.63
USP39-203ENST00000409470 SPATA31A1Q5TZJ5 1347 aa25.23■■□□□ 1.63
USP39-203ENST00000409470 HSP90AA1P07900 732 aaKnown RBP25.22■■□□□ 1.63
USP39-203ENST00000409470 MCCP23508 829 aa25.22■■□□□ 1.63
USP39-203ENST00000409470 CCDC191Q8NCU4 936 aa25.22■■□□□ 1.63
USP39-203ENST00000409470 EAF2Q96CJ1 260 aaPredicted RBP25.22■■□□□ 1.63
USP39-203ENST00000409470 THRAP3Q9Y2W1 955 aaKnown RBP25.22■■□□□ 1.63
USP39-203ENST00000409470 RFX5P48382 616 aaPredicted RBP25.21■■□□□ 1.63
USP39-203ENST00000409470 KIF6Q6ZMV9 814 aa25.21■■□□□ 1.63
USP39-203ENST00000409470 CCDC8Q9H0W5 538 aaPredicted RBP25.21■■□□□ 1.63
USP39-203ENST00000409470 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.21■■□□□ 1.63
USP39-203ENST00000409470 PTPN12Q05209 780 aaKnown RBP25.2■■□□□ 1.63
USP39-203ENST00000409470 LMBR1LQ6UX01 489 aa25.2■■□□□ 1.63
USP39-203ENST00000409470 CHMP3Q9Y3E7 222 aa25.2■■□□□ 1.63
USP39-203ENST00000409470 NRAPQ86VF7 1730 aa25.2■■□□□ 1.62
USP39-203ENST00000409470 DDB1Q16531 1140 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms