RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 TSPY26PQ9H489 355 aa6.77□□□□□ -1.33
RFFL-202ENST00000394597 CWC15Q9P013 229 aaKnown RBP6.77□□□□□ -1.33
RFFL-202ENST00000394597 SMARCA5O60264 1052 aaPredicted RBP6.77□□□□□ -1.33
RFFL-202ENST00000394597 MBD3O95983 291 aa6.77□□□□□ -1.33
RFFL-202ENST00000394597 HSP90AB3PQ58FF7 597 aa6.77□□□□□ -1.33
RFFL-202ENST00000394597 BRINP3Q76B58 766 aa6.77□□□□□ -1.33
RFFL-202ENST00000394597 A0A087WZG4 1122 aa6.77□□□□□ -1.33
RFFL-202ENST00000394597 HIP1O00291 1037 aa6.77□□□□□ -1.33
RFFL-202ENST00000394597 UTP14CQ5TAP6 766 aaKnown RBP6.77□□□□□ -1.33
RFFL-202ENST00000394597 CDCA7Q9BWT1 371 aaPredicted RBP6.77□□□□□ -1.33
RFFL-202ENST00000394597 SLC52A2Q9HAB3 445 aa6.77□□□□□ -1.33
RFFL-202ENST00000394597 EIF4A1P60842 406 aaKnown RBP6.76□□□□□ -1.33
RFFL-202ENST00000394597 NUCB1Q02818 461 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 RNF20Q5VTR2 975 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 G2E3Q7L622 706 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 AACSQ86V21 672 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 TBC1D32Q96NH3 1257 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 FSD1Q9BTV5 496 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 DDX21Q9NR30 783 aaKnown RBP eCLIP6.76□□□□□ -1.33
RFFL-202ENST00000394597 CNNM1Q9NRU3 951 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.76□□□□□ -1.33
RFFL-202ENST00000394597 CDC42BPGQ6DT37 1551 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 SPATA31A3Q5VYP0 1347 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 PATL2C9JE40 543 aaKnown RBP6.76□□□□□ -1.33
RFFL-202ENST00000394597 G3V3G9 751 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 ZNF853P0CG23 659 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 HMGB2P26583 209 aaKnown RBP6.76□□□□□ -1.33
RFFL-202ENST00000394597 ATP8B2P98198 1209 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 DCAF8Q5TAQ9 597 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 PPP1R42Q7Z4L9 355 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 C8orf37Q96NL8 207 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 PHAXQ9H814 394 aaKnown RBP6.76□□□□□ -1.33
RFFL-202ENST00000394597 SYCE3A1L190 88 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 VPS37DQ86XT2 251 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 ZBTB3Q9H5J0 574 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 CEP126Q9P2H0 1117 aa6.76□□□□□ -1.33
RFFL-202ENST00000394597 FSD2A1L4K1 749 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 PHKG2P15735 406 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 MX1P20591 662 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 HS1BP3Q53T59 392 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 CCDC158Q5M9N0 1113 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 CCDC112Q8NEF3 446 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 LINS1Q8NG48 757 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 TRIM34Q9BYJ4 488 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 SLIT1O75093 1534 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 ATP5J2-PTCD1G3V325 749 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 NUTM1Q86Y26 1132 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 CWC25Q9NXE8 425 aaPredicted RBP6.75□□□□□ -1.33
RFFL-202ENST00000394597 ZNF652Q9Y2D9 606 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 DIP2AQ14689 1571 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 SIGLEC1Q9BZZ2 1709 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 K7ELQ4 463 aaPredicted RBP6.75□□□□□ -1.33
RFFL-202ENST00000394597 SETQ01105 290 aaPredicted RBP6.75□□□□□ -1.33
RFFL-202ENST00000394597 SPC24Q8NBT2 197 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 ARHGAP23Q9P227 1491 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 ERBB3P21860 1342 aa6.75□□□□□ -1.33
RFFL-202ENST00000394597 ARHGEF28Q8N1W1 1705 aaKnown RBP6.75□□□□□ -1.33
RFFL-202ENST00000394597 TPM3P06753 285 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 SMC5Q8IY18 1101 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 DCTPP1Q9H773 170 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 C1orf167Q5SNV9 1468 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 KIF13AQ9H1H9 1805 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 ERVV-2B6SEH9 535 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 GRM8O00222 908 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 SEC24BO95487 1268 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 SSFA2P28290 1259 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 BRPF1P55201 1214 aaPredicted RBP6.74□□□□□ -1.33
RFFL-202ENST00000394597 TPD52L1Q16890 204 aaPredicted RBP6.74□□□□□ -1.33
RFFL-202ENST00000394597 KLHL40Q2TBA0 621 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 SMARCC1Q92922 1105 aaPredicted RBP6.74□□□□□ -1.33
RFFL-202ENST00000394597 MPHOSPH8Q99549 860 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 CARD10Q9BWT7 1032 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 NOL7Q9UMY1 257 aaKnown RBP6.74□□□□□ -1.33
RFFL-202ENST00000394597 MYO3AQ8NEV4 1616 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 GLRX3O76003 335 aaKnown RBP6.74□□□□□ -1.33
RFFL-202ENST00000394597 BMP2KLQ5H9B9 411 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 CEP85Q6P2H3 762 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 UBE3BQ7Z3V4 1068 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 GPATCH11Q8N954 259 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 ACSBG1Q96GR2 724 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 ARGLU1Q9NWB6 273 aaPredicted RBP6.74□□□□□ -1.33
RFFL-202ENST00000394597 CPS1P31327 1500 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 MAP4K4O95819 1239 aaPredicted RBP6.74□□□□□ -1.33
RFFL-202ENST00000394597 TTC39AQ5SRH9 613 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 CHMP4CQ96CF2 233 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 DEF6Q9H4E7 631 aa6.74□□□□□ -1.33
RFFL-202ENST00000394597 TRMT112Q9UI30 125 aaKnown RBP6.74□□□□□ -1.33
RFFL-202ENST00000394597 USP19O94966 1318 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 ERBB4Q15303 1308 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 GNL2Q13823 731 aaKnown RBP6.73□□□□□ -1.33
RFFL-202ENST00000394597 WASHC4Q2M389 1173 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 KCNQ3O43525 872 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 GIGYF1O75420 1035 aaPredicted RBP6.73□□□□□ -1.33
RFFL-202ENST00000394597 PIP4K2AP48426 406 aaPredicted RBP6.73□□□□□ -1.33
RFFL-202ENST00000394597 RABEP1Q15276 862 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 CCDC85AQ96PX6 553 aaPredicted RBP6.73□□□□□ -1.33
RFFL-202ENST00000394597 TOMM22Q9NS69 142 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 OVOS2A0A0J9YW53 1432 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 OVOS2Q6IE36 1432 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 WDR17Q8IZU2 1322 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms