RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 RHPN1Q8TCX5 695 aa31.04■■■□□ 2.56
SHOX2-201ENST00000389589 NBPF26B4DH59 902 aa31.03■■■□□ 2.56
SHOX2-201ENST00000389589 NBPF14Q5TI25 921 aa31.03■■■□□ 2.56
SHOX2-201ENST00000389589 NBPF10Q6P3W6 841 aaKnown RBP31.03■■■□□ 2.56
SHOX2-201ENST00000389589 NBPF15Q8N660 670 aa31.03■■■□□ 2.56
SHOX2-201ENST00000389589 THRAP3Q9Y2W1 955 aaKnown RBP31.03■■■□□ 2.56
SHOX2-201ENST00000389589 NUP188Q5SRE5 1749 aa31.03■■■□□ 2.56
SHOX2-201ENST00000389589 SUCLG2Q96I99 432 aa31.02■■■□□ 2.56
SHOX2-201ENST00000389589 ADAMTS2O95450 1211 aa31.02■■■□□ 2.56
SHOX2-201ENST00000389589 VSIG10Q8N0Z9 540 aa31.02■■■□□ 2.56
SHOX2-201ENST00000389589 TEX13AQ9BXU3 409 aaPredicted RBP31.02■■■□□ 2.56
SHOX2-201ENST00000389589 PIGBQ92521 554 aa31.01■■■□□ 2.55
SHOX2-201ENST00000389589 PIP4K2BP78356 416 aa31■■■□□ 2.55
SHOX2-201ENST00000389589 KAZALD1Q96I82 304 aa30.99■■■□□ 2.55
SHOX2-201ENST00000389589 ERC1Q8IUD2 1116 aa30.99■■■□□ 2.55
SHOX2-201ENST00000389589 BICC1Q9H694 974 aaKnown RBP30.99■■■□□ 2.55
SHOX2-201ENST00000389589 SPATA31A1Q5TZJ5 1347 aa30.98■■■□□ 2.55
SHOX2-201ENST00000389589 COL15A1P39059 1388 aa30.98■■■□□ 2.55
SHOX2-201ENST00000389589 KAT6BQ8WYB5 2073 aa30.97■■■□□ 2.55
SHOX2-201ENST00000389589 IL1RAPL2Q9NP60 686 aa30.97■■■□□ 2.55
SHOX2-201ENST00000389589 BCL9O00512 1426 aa30.97■■■□□ 2.55
SHOX2-201ENST00000389589 A1BGP04217 495 aa30.97■■■□□ 2.55
SHOX2-201ENST00000389589 OS9Q13438 667 aaPredicted RBP30.97■■■□□ 2.55
SHOX2-201ENST00000389589 ATG3Q9NT62 314 aa30.96■■■□□ 2.55
SHOX2-201ENST00000389589 ASAP1Q9ULH1 1129 aa30.96■■■□□ 2.55
SHOX2-201ENST00000389589 AK9Q5TCS8 1911 aa30.94■■■□□ 2.54
SHOX2-201ENST00000389589 AEBP2Q6ZN18 517 aaPredicted RBP30.94■■■□□ 2.54
SHOX2-201ENST00000389589 SLIT2O94813 1529 aa30.93■■■□□ 2.54
SHOX2-201ENST00000389589 NUTM2BA6NNL0 878 aaPredicted RBP30.93■■■□□ 2.54
SHOX2-201ENST00000389589 NUTM2EB1AL46 878 aaPredicted RBP30.93■■■□□ 2.54
SHOX2-201ENST00000389589 NUTM2AQ8IVF1 878 aaPredicted RBP30.93■■■□□ 2.54
SHOX2-201ENST00000389589 TBC1D2Q9BYX2 928 aa30.93■■■□□ 2.54
SHOX2-201ENST00000389589 DOT1LQ8TEK3 1739 aa30.92■■■□□ 2.54
SHOX2-201ENST00000389589 TTLL7Q6ZT98 887 aa30.91■■■□□ 2.54
SHOX2-201ENST00000389589 STARD3NLO95772 234 aa30.91■■■□□ 2.54
SHOX2-201ENST00000389589 TSHZ3Q63HK5 1081 aa30.91■■■□□ 2.54
SHOX2-201ENST00000389589 NUTM1Q86Y26 1132 aa30.91■■■□□ 2.54
SHOX2-201ENST00000389589 CLASRPQ8N2M8 674 aaKnown RBP30.91■■■□□ 2.54
SHOX2-201ENST00000389589 SPATA31A5Q5VU36 1347 aa30.91■■■□□ 2.54
SHOX2-201ENST00000389589 SPATA31A7Q8IWB4 1347 aa30.91■■■□□ 2.54
SHOX2-201ENST00000389589 UBAP1LF5GYI3 381 aa30.89■■■□□ 2.54
SHOX2-201ENST00000389589 ATP5J2-PTCD1G3V325 749 aa30.89■■■□□ 2.54
SHOX2-201ENST00000389589 USP42Q9H9J4 1324 aaKnown RBP30.89■■■□□ 2.54
SHOX2-201ENST00000389589 A0A087WZG4 1122 aa30.89■■■□□ 2.54
SHOX2-201ENST00000389589 G3BP1Q13283 466 aaKnown RBP eCLIP30.89■■■□□ 2.54
SHOX2-201ENST00000389589 DDB1Q16531 1140 aa30.89■■■□□ 2.54
SHOX2-201ENST00000389589 REC8O95072 547 aa30.88■■■□□ 2.53
SHOX2-201ENST00000389589 PA2G4Q9UQ80 394 aaKnown RBP30.88■■■□□ 2.53
SHOX2-201ENST00000389589 UBE3BQ7Z3V4 1068 aa30.88■■■□□ 2.53
SHOX2-201ENST00000389589 DNAJC10Q8IXB1 793 aa30.88■■■□□ 2.53
SHOX2-201ENST00000389589 RBM42Q9BTD8 480 aaKnown RBP30.88■■■□□ 2.53
SHOX2-201ENST00000389589 TTC41PQ6P2S7 1318 aa30.88■■■□□ 2.53
SHOX2-201ENST00000389589 CWC25Q9NXE8 425 aaPredicted RBP30.87■■■□□ 2.53
SHOX2-201ENST00000389589 TJP1Q07157 1748 aa30.87■■■□□ 2.53
SHOX2-201ENST00000389589 TRIM6-TRIM34B2RNG4 842 aa30.86■■■□□ 2.53
SHOX2-201ENST00000389589 ERC2O15083 957 aa30.86■■■□□ 2.53
SHOX2-201ENST00000389589 RABL6Q3YEC7 729 aaPredicted RBP30.86■■■□□ 2.53
SHOX2-201ENST00000389589 BARGINQ6ZT62 677 aa30.86■■■□□ 2.53
SHOX2-201ENST00000389589 USP26Q9BXU7 913 aa30.86■■■□□ 2.53
SHOX2-201ENST00000389589 H7C1W4 665 aa30.85■■■□□ 2.53
SHOX2-201ENST00000389589 CASP7P55210 303 aa30.85■■■□□ 2.53
SHOX2-201ENST00000389589 EPHA10Q5JZY3 1008 aa30.85■■■□□ 2.53
SHOX2-201ENST00000389589 CCDC191Q8NCU4 936 aa30.85■■■□□ 2.53
SHOX2-201ENST00000389589 SNX21Q969T3 373 aa30.85■■■□□ 2.53
SHOX2-201ENST00000389589 PI4K2BQ8TCG2 481 aa30.85■■■□□ 2.53
SHOX2-201ENST00000389589 HSCBQ8IWL3 235 aa30.84■■■□□ 2.53
SHOX2-201ENST00000389589 RILPL2Q969X0 211 aa30.84■■■□□ 2.53
SHOX2-201ENST00000389589 KIF2CQ99661 725 aa30.84■■■□□ 2.53
SHOX2-201ENST00000389589 ZBTB3Q9H5J0 574 aa30.84■■■□□ 2.53
SHOX2-201ENST00000389589 GPATCH3Q96I76 525 aa30.83■■■□□ 2.53
SHOX2-201ENST00000389589 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.83■■■□□ 2.53
SHOX2-201ENST00000389589 SYTL4Q96C24 671 aaPredicted RBP30.83■■■□□ 2.53
SHOX2-201ENST00000389589 COPRSQ9NQ92 184 aa30.83■■■□□ 2.53
SHOX2-201ENST00000389589 IFIT2P09913 472 aaKnown RBP30.82■■■□□ 2.52
SHOX2-201ENST00000389589 PRIM1P49642 420 aaKnown RBP30.82■■■□□ 2.52
SHOX2-201ENST00000389589 KIF6Q6ZMV9 814 aa30.82■■■□□ 2.52
SHOX2-201ENST00000389589 JCADQ9P266 1359 aa30.81■■■□□ 2.52
SHOX2-201ENST00000389589 GLRX3O76003 335 aaKnown RBP30.81■■■□□ 2.52
SHOX2-201ENST00000389589 SASH1O94885 1247 aa30.8■■■□□ 2.52
SHOX2-201ENST00000389589 CHMLP26374 656 aa30.8■■■□□ 2.52
SHOX2-201ENST00000389589 NBR1Q14596 966 aa30.8■■■□□ 2.52
SHOX2-201ENST00000389589 CCDC9Q9Y3X0 531 aaKnown RBP30.8■■■□□ 2.52
SHOX2-201ENST00000389589 JARID2Q92833 1246 aaPredicted RBP30.79■■■□□ 2.52
SHOX2-201ENST00000389589 ESYT1Q9BSJ8 1104 aa30.79■■■□□ 2.52
SHOX2-201ENST00000389589 RFX5P48382 616 aaPredicted RBP30.78■■■□□ 2.52
SHOX2-201ENST00000389589 UNC5CLQ8IV45 518 aa30.78■■■□□ 2.52
SHOX2-201ENST00000389589 ISCA1Q9BUE6 129 aa30.78■■■□□ 2.52
SHOX2-201ENST00000389589 ECHDC1Q9NTX5 307 aa30.78■■■□□ 2.52
SHOX2-201ENST00000389589 CYP19A1P11511 503 aaPredicted RBP30.78■■■□□ 2.52
SHOX2-201ENST00000389589 TCIRG1Q13488 830 aa30.78■■■□□ 2.52
SHOX2-201ENST00000389589 CNTROBQ8N137 903 aa30.78■■■□□ 2.52
SHOX2-201ENST00000389589 TRIM28Q13263 835 aaKnown RBP30.77■■■□□ 2.52
SHOX2-201ENST00000389589 AACSQ86V21 672 aa30.77■■■□□ 2.52
SHOX2-201ENST00000389589 SLC4A9Q96Q91 983 aa30.77■■■□□ 2.52
SHOX2-201ENST00000389589 MARCH10Q8NA82 808 aaPredicted RBP30.76■■■□□ 2.51
SHOX2-201ENST00000389589 SIL1Q9H173 461 aa30.76■■■□□ 2.51
SHOX2-201ENST00000389589 FOXO4P98177 505 aa30.75■■■□□ 2.51
SHOX2-201ENST00000389589 PTPN12Q05209 780 aaKnown RBP30.75■■■□□ 2.51
SHOX2-201ENST00000389589 ZNF330Q9Y3S2 320 aaPredicted RBP30.75■■■□□ 2.51
SHOX2-201ENST00000389589 RABEP1Q15276 862 aa30.75■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms