RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 CIZ1Q9ULV3 898 aaPredicted RBP28.32■■■□□ 2.12
VPS16-201ENST00000380443 COL14A1Q05707 1796 aaKnown RBP28.32■■■□□ 2.12
VPS16-201ENST00000380443 SLIT2O94813 1529 aa28.31■■■□□ 2.12
VPS16-201ENST00000380443 FRAT2O75474 233 aaPredicted RBP28.3■■■□□ 2.12
VPS16-201ENST00000380443 IL27Q8NEV9 243 aa28.3■■■□□ 2.12
VPS16-201ENST00000380443 METTL22Q9BUU2 404 aaPredicted RBP28.3■■■□□ 2.12
VPS16-201ENST00000380443 USP42Q9H9J4 1324 aaKnown RBP28.3■■■□□ 2.12
VPS16-201ENST00000380443 K7ELQ4 463 aaPredicted RBP28.29■■■□□ 2.12
VPS16-201ENST00000380443 LAMB4A4D0S4 1761 aa28.29■■■□□ 2.12
VPS16-201ENST00000380443 NWD2Q9ULI1 1742 aa28.29■■■□□ 2.12
VPS16-201ENST00000380443 PLCH1Q4KWH8 1693 aa28.28■■■□□ 2.12
VPS16-201ENST00000380443 AIMP1Q12904 312 aaKnown RBP28.28■■■□□ 2.12
VPS16-201ENST00000380443 UNC5CLQ8IV45 518 aa28.28■■■□□ 2.12
VPS16-201ENST00000380443 XAGE3Q8WTP9 111 aa28.28■■■□□ 2.12
VPS16-201ENST00000380443 TTC41PQ6P2S7 1318 aa28.28■■■□□ 2.12
VPS16-201ENST00000380443 CWF19L2Q2TBE0 894 aaKnown RBP28.27■■■□□ 2.12
VPS16-201ENST00000380443 ANKRD13DQ6ZTN6 518 aa28.27■■■□□ 2.12
VPS16-201ENST00000380443 COPS6Q7L5N1 327 aa28.27■■■□□ 2.12
VPS16-201ENST00000380443 LRP10Q7Z4F1 713 aa28.27■■■□□ 2.12
VPS16-201ENST00000380443 TRPC5Q9UL62 973 aaPredicted RBP28.27■■■□□ 2.12
VPS16-201ENST00000380443 BCL9LQ86UU0 1499 aa28.27■■■□□ 2.12
VPS16-201ENST00000380443 POTEAQ6S8J7 498 aa28.27■■■□□ 2.12
VPS16-201ENST00000380443 QTRT2Q9H974 415 aaKnown RBP28.27■■■□□ 2.12
VPS16-201ENST00000380443 DDIT3P35638 169 aa28.26■■■□□ 2.11
VPS16-201ENST00000380443 EVA1CP58658 441 aa28.26■■■□□ 2.11
VPS16-201ENST00000380443 ESYT1Q9BSJ8 1104 aa28.26■■■□□ 2.11
VPS16-201ENST00000380443 BTG4Q9NY30 223 aa28.26■■■□□ 2.11
VPS16-201ENST00000380443 USP16Q9Y5T5 823 aa28.26■■■□□ 2.11
VPS16-201ENST00000380443 COL15A1P39059 1388 aa28.26■■■□□ 2.11
VPS16-201ENST00000380443 NEURL1BA8MQ27 555 aa28.25■■■□□ 2.11
VPS16-201ENST00000380443 IL1RAPL2Q9NP60 686 aa28.25■■■□□ 2.11
VPS16-201ENST00000380443 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.25■■■□□ 2.11
VPS16-201ENST00000380443 TRIM6-TRIM34B2RNG4 842 aa28.25■■■□□ 2.11
VPS16-201ENST00000380443 IGKV5-2P06315 115 aa28.25■■■□□ 2.11
VPS16-201ENST00000380443 MYL6BP14649 208 aa28.25■■■□□ 2.11
VPS16-201ENST00000380443 CHMLP26374 656 aa28.25■■■□□ 2.11
VPS16-201ENST00000380443 OS9Q13438 667 aaPredicted RBP28.25■■■□□ 2.11
VPS16-201ENST00000380443 CLASRPQ8N2M8 674 aaKnown RBP28.25■■■□□ 2.11
VPS16-201ENST00000380443 MCCP23508 829 aa28.23■■■□□ 2.11
VPS16-201ENST00000380443 GCKRQ14397 625 aa28.23■■■□□ 2.11
VPS16-201ENST00000380443 GPATCH3Q96I76 525 aa28.22■■■□□ 2.11
VPS16-201ENST00000380443 SUCLG2Q96I99 432 aa28.22■■■□□ 2.11
VPS16-201ENST00000380443 PI4K2BQ8TCG2 481 aa28.22■■■□□ 2.11
VPS16-201ENST00000380443 RILPL2Q969X0 211 aa28.22■■■□□ 2.11
VPS16-201ENST00000380443 GLI3P10071 1580 aa28.22■■■□□ 2.11
VPS16-201ENST00000380443 UBR2Q8IWV8 1755 aa28.21■■■□□ 2.11
VPS16-201ENST00000380443 NUTM1Q86Y26 1132 aa28.21■■■□□ 2.11
VPS16-201ENST00000380443 ATRNO75882 1429 aa28.21■■■□□ 2.11
VPS16-201ENST00000380443 ST18O60284 1047 aa28.2■■■□□ 2.11
VPS16-201ENST00000380443 GLRX3O76003 335 aaKnown RBP28.2■■■□□ 2.11
VPS16-201ENST00000380443 RXRBP28702 533 aa28.2■■■□□ 2.11
VPS16-201ENST00000380443 ANAPC15P60006 121 aa28.2■■■□□ 2.11
VPS16-201ENST00000380443 PLBD2Q8NHP8 589 aa28.2■■■□□ 2.11
VPS16-201ENST00000380443 PAPPAQ13219 1627 aa28.2■■■□□ 2.11
VPS16-201ENST00000380443 CNTROBQ8N137 903 aa28.2■■■□□ 2.1
VPS16-201ENST00000380443 SPRYD3Q8NCJ5 442 aa28.2■■■□□ 2.1
VPS16-201ENST00000380443 MYD88Q99836 296 aa28.2■■■□□ 2.1
VPS16-201ENST00000380443 RBM6P78332 1123 aaKnown RBP28.19■■■□□ 2.1
VPS16-201ENST00000380443 GSE1Q14687 1217 aa28.19■■■□□ 2.1
VPS16-201ENST00000380443 TSHZ3Q63HK5 1081 aa28.19■■■□□ 2.1
VPS16-201ENST00000380443 IL17RAQ96F46 866 aa28.19■■■□□ 2.1
VPS16-201ENST00000380443 KAZALD1Q96I82 304 aa28.19■■■□□ 2.1
VPS16-201ENST00000380443 BICC1Q9H694 974 aaKnown RBP28.19■■■□□ 2.1
VPS16-201ENST00000380443 HSP90AA1P07900 732 aaKnown RBP28.18■■■□□ 2.1
VPS16-201ENST00000380443 G3BP1Q13283 466 aaKnown RBP eCLIP28.18■■■□□ 2.1
VPS16-201ENST00000380443 RBM42Q9BTD8 480 aaKnown RBP28.18■■■□□ 2.1
VPS16-201ENST00000380443 STRN4Q9NRL3 753 aa28.18■■■□□ 2.1
VPS16-201ENST00000380443 NRAPQ86VF7 1730 aa28.17■■■□□ 2.1
VPS16-201ENST00000380443 VPS72Q15906 364 aa28.17■■■□□ 2.1
VPS16-201ENST00000380443 SHANK3Q9BYB0 1731 aa28.17■■■□□ 2.1
VPS16-201ENST00000380443 TNS2Q63HR2 1409 aa28.17■■■□□ 2.1
VPS16-201ENST00000380443 ECHDC1Q9NTX5 307 aa28.15■■■□□ 2.1
VPS16-201ENST00000380443 CCDC9Q9Y3X0 531 aaKnown RBP28.15■■■□□ 2.1
VPS16-201ENST00000380443 CD2BP2O95400 341 aaKnown RBP28.15■■■□□ 2.1
VPS16-201ENST00000380443 KCPQ6ZWJ8 1503 aa28.15■■■□□ 2.1
VPS16-201ENST00000380443 GJD4Q96KN9 370 aaPredicted RBP28.15■■■□□ 2.1
VPS16-201ENST00000380443 IFIT2P09913 472 aaKnown RBP28.14■■■□□ 2.1
VPS16-201ENST00000380443 MCM2P49736 904 aa28.14■■■□□ 2.1
VPS16-201ENST00000380443 MCM4P33991 863 aa28.13■■■□□ 2.09
VPS16-201ENST00000380443 ARFGEF2Q9Y6D5 1785 aa28.13■■■□□ 2.09
VPS16-201ENST00000380443 AK9Q5TCS8 1911 aa28.13■■■□□ 2.09
VPS16-201ENST00000380443 TEX13AQ9BXU3 409 aaPredicted RBP28.12■■■□□ 2.09
VPS16-201ENST00000380443 RABL6Q3YEC7 729 aaPredicted RBP28.11■■■□□ 2.09
VPS16-201ENST00000380443 DDX54Q8TDD1 881 aaKnown RBP28.11■■■□□ 2.09
VPS16-201ENST00000380443 COPRSQ9NQ92 184 aa28.11■■■□□ 2.09
VPS16-201ENST00000380443 PTMSP20962 102 aa28.1■■■□□ 2.09
VPS16-201ENST00000380443 ILDR2Q71H61 639 aa28.1■■■□□ 2.09
VPS16-201ENST00000380443 CWC22Q9HCG8 908 aaKnown RBP28.1■■■□□ 2.09
VPS16-201ENST00000380443 ANO2Q9NQ90 1003 aa28.1■■■□□ 2.09
VPS16-201ENST00000380443 PA2G4Q9UQ80 394 aaKnown RBP28.1■■■□□ 2.09
VPS16-201ENST00000380443 DDX11L8A8MPP1 907 aa28.09■■■□□ 2.09
VPS16-201ENST00000380443 RAB3GAP1Q15042 981 aa28.09■■■□□ 2.09
VPS16-201ENST00000380443 VSIG10Q8N0Z9 540 aa28.09■■■□□ 2.09
VPS16-201ENST00000380443 RUFY2Q8WXA3 655 aa28.09■■■□□ 2.09
VPS16-201ENST00000380443 AFDNP55196 1824 aaKnown RBP28.09■■■□□ 2.09
VPS16-201ENST00000380443 NBPF26B4DH59 902 aa28.08■■■□□ 2.09
VPS16-201ENST00000380443 NBPF14Q5TI25 921 aa28.08■■■□□ 2.09
VPS16-201ENST00000380443 NBPF10Q6P3W6 841 aaKnown RBP28.08■■■□□ 2.09
VPS16-201ENST00000380443 NBPF15Q8N660 670 aa28.08■■■□□ 2.09
VPS16-201ENST00000380443 TMOD3Q9NYL9 352 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms