RNA–Protein interactions for RNA: ENST00000379237.6

USP6NL-202, Transcript of USP6 N-terminal like, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP6NL, Length 4,546 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-202ENST00000379237 LIG3P49916 1009 aa12.73□□□□□ -0.37
USP6NL-202ENST00000379237 PPP2R3AQ06190 1150 aa12.73□□□□□ -0.37
USP6NL-202ENST00000379237 HDGFL2Q7Z4V5 671 aaPredicted RBP12.73□□□□□ -0.37
USP6NL-202ENST00000379237 ANKRD44Q8N8A2 993 aa12.73□□□□□ -0.37
USP6NL-202ENST00000379237 GBP3Q9H0R5 595 aa12.73□□□□□ -0.37
USP6NL-202ENST00000379237 SPG7Q9UQ90 795 aa12.73□□□□□ -0.37
USP6NL-202ENST00000379237 NPHP3Q7Z494 1330 aa12.73□□□□□ -0.37
USP6NL-202ENST00000379237 CCDC144BQ3MJ40 725 aa12.73□□□□□ -0.37
USP6NL-202ENST00000379237 CCDC144CPQ8IYA2 1237 aa12.73□□□□□ -0.37
USP6NL-202ENST00000379237 BIN1O00499 593 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 EBAG9O00559 213 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 ATP2B1P20020 1258 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 PRPF40BQ6NWY9 871 aaKnown RBP12.72□□□□□ -0.37
USP6NL-202ENST00000379237 MRPL50Q8N5N7 158 aaKnown RBP12.72□□□□□ -0.37
USP6NL-202ENST00000379237 SH2B1Q9NRF2 756 aaPredicted RBP12.72□□□□□ -0.37
USP6NL-202ENST00000379237 MKRN1Q9UHC7 482 aaKnown RBP12.72□□□□□ -0.37
USP6NL-202ENST00000379237 TUBB4AP04350 444 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 ARHGAP45Q92619 1136 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 NEBLO76041 1014 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 NUTM1Q86Y26 1132 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 TSPYL6Q8N831 410 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 RAI14Q9P0K7 980 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 SUFUQ9UMX1 484 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 PRDM2Q13029 1718 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 SRGAP3O43295 1099 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 GNAI2P04899 355 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 KIF4BQ2VIQ3 1234 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 NECTIN2Q92692 538 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 RABEP2Q9H5N1 569 aa12.72□□□□□ -0.37
USP6NL-202ENST00000379237 VIRMAQ69YN4 1812 aaKnown RBP12.71□□□□□ -0.37
USP6NL-202ENST00000379237 PLA2G4AP47712 749 aa12.71□□□□□ -0.37
USP6NL-202ENST00000379237 AKAP17AQ02040 695 aaKnown RBP12.71□□□□□ -0.37
USP6NL-202ENST00000379237 LRRFIP1Q32MZ4 808 aaKnown RBP12.71□□□□□ -0.37
USP6NL-202ENST00000379237 CRACR2AQ9BSW2 395 aa12.71□□□□□ -0.37
USP6NL-202ENST00000379237 IFNKQ9P0W0 207 aa12.71□□□□□ -0.37
USP6NL-202ENST00000379237 PUF60Q9UHX1 559 aaKnown RBP12.71□□□□□ -0.37
USP6NL-202ENST00000379237 CTAGE5O15320 804 aa12.71□□□□□ -0.37
USP6NL-202ENST00000379237 SURF6O75683 361 aaKnown RBP12.71□□□□□ -0.37
USP6NL-202ENST00000379237 MMS22LQ6ZRQ5 1243 aa12.71□□□□□ -0.37
USP6NL-202ENST00000379237 HDXQ7Z353 690 aa12.71□□□□□ -0.37
USP6NL-202ENST00000379237 GPATCH3Q96I76 525 aa12.71□□□□□ -0.37
USP6NL-202ENST00000379237 UTP14AQ9BVJ6 771 aaKnown RBP12.71□□□□□ -0.37
USP6NL-202ENST00000379237 IL16Q14005 1332 aa12.71□□□□□ -0.38
USP6NL-202ENST00000379237 TOP1P11387 765 aaKnown RBP12.71□□□□□ -0.38
USP6NL-202ENST00000379237 PSMA5P28066 241 aa12.71□□□□□ -0.38
USP6NL-202ENST00000379237 NUTM2DQ5VT03 806 aaPredicted RBP12.71□□□□□ -0.38
USP6NL-202ENST00000379237 PDE11AQ9HCR9 933 aa12.71□□□□□ -0.38
USP6NL-202ENST00000379237 CABP2Q9NPB3 220 aa12.71□□□□□ -0.38
USP6NL-202ENST00000379237 ORC3Q9UBD5 711 aaPredicted RBP12.71□□□□□ -0.38
USP6NL-202ENST00000379237 ETF1P62495 437 aaKnown RBP12.7□□□□□ -0.38
USP6NL-202ENST00000379237 RNF216Q9NWF9 866 aaPredicted RBP12.7□□□□□ -0.38
USP6NL-202ENST00000379237 EVC2Q86UK5 1308 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 PRR29P0C7W0 189 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 TICAM2Q86XR7 235 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 CEP57Q86XR8 500 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 MEIS3Q99687 375 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 EPC1Q9H2F5 836 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 CLSTN2Q9H4D0 955 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 FHOD1Q9Y613 1164 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 MAGI3Q5TCQ9 1506 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 SLC4A2P04920 1241 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 CCDC158Q5M9N0 1113 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 RNF187Q5TA31 235 aaPredicted RBP12.7□□□□□ -0.38
USP6NL-202ENST00000379237 TMEM132EQ6IEE7 984 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 TTC6Q86TZ1 520 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 CCAR1Q8IX12 1150 aaKnown RBP12.7□□□□□ -0.38
USP6NL-202ENST00000379237 SIRT2Q8IXJ6 389 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 EFCAB8A8MWE9 144 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 CHMLP26374 656 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 NOP2P46087 812 aaKnown RBP12.7□□□□□ -0.38
USP6NL-202ENST00000379237 CCDC70Q6NSX1 233 aa12.7□□□□□ -0.38
USP6NL-202ENST00000379237 TDRD7Q8NHU6 1098 aaKnown RBP12.7□□□□□ -0.38
USP6NL-202ENST00000379237 RHOXF2BP0C7M4 288 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 CCDC30Q5VVM6 783 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 RHOXF2Q9BQY4 288 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 RAB11FIP3O75154 756 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 BRPF1P55201 1214 aaPredicted RBP12.69□□□□□ -0.38
USP6NL-202ENST00000379237 GPR161Q8N6U8 529 aaKnown RBP12.69□□□□□ -0.38
USP6NL-202ENST00000379237 PPP1R13BQ96KQ4 1090 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 CBFA2T2O43439 604 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 ATP8B1O43520 1251 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 OLFM4Q6UX06 510 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 CARMIL2Q6F5E8 1435 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 NESP48681 1621 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 VAMP4O75379 141 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 BLOC1S2Q6QNY1 142 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 TRIM35Q9UPQ4 493 aa12.69□□□□□ -0.38
USP6NL-202ENST00000379237 SCAF11Q99590 1463 aaKnown RBP12.68□□□□□ -0.38
USP6NL-202ENST00000379237 CEP85Q6P2H3 762 aa12.68□□□□□ -0.38
USP6NL-202ENST00000379237 EFCAB13Q8IY85 973 aa12.68□□□□□ -0.38
USP6NL-202ENST00000379237 FSIP1Q8NA03 581 aa12.68□□□□□ -0.38
USP6NL-202ENST00000379237 TMEM87AQ8NBN3 555 aa12.68□□□□□ -0.38
USP6NL-202ENST00000379237 FANCD2Q9BXW9 1451 aa12.68□□□□□ -0.38
USP6NL-202ENST00000379237 ZNF853P0CG23 659 aa12.68□□□□□ -0.38
USP6NL-202ENST00000379237 LMOD1P29536 600 aaPredicted RBP12.68□□□□□ -0.38
USP6NL-202ENST00000379237 ERC1Q8IUD2 1116 aa12.68□□□□□ -0.38
USP6NL-202ENST00000379237 MRFAP1L1Q96HT8 127 aa12.68□□□□□ -0.38
USP6NL-202ENST00000379237 TCEANC2Q96MN5 208 aa12.68□□□□□ -0.38
USP6NL-202ENST00000379237 GAPVD1Q14C86 1478 aa12.68□□□□□ -0.38
USP6NL-202ENST00000379237 POTEB2H3BUK9 544 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms