RNA–Protein interactions for RNA: ENST00000379237.6

USP6NL-202, Transcript of USP6 N-terminal like, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP6NL, Length 4,546 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-202ENST00000379237 PELP1Q8IZL8 1130 aaKnown RBP18.49■□□□□ 0.55
USP6NL-202ENST00000379237 HRCP23327 699 aa18.12■□□□□ 0.49
USP6NL-202ENST00000379237 NISCHQ9Y2I1 1504 aa18.05■□□□□ 0.48
USP6NL-202ENST00000379237 MYT1Q01538 1121 aa18.01■□□□□ 0.47
USP6NL-202ENST00000379237 PCGF6Q9BYE7 350 aa18■□□□□ 0.47
USP6NL-202ENST00000379237 PPARGC1BQ86YN6 1023 aaKnown RBP17.88■□□□□ 0.45
USP6NL-202ENST00000379237 SUPT5HO00267 1087 aaKnown RBP17.75■□□□□ 0.43
USP6NL-202ENST00000379237 SHROOM4Q9ULL8 1493 aa17.41■□□□□ 0.38
USP6NL-202ENST00000379237 SCAF1Q9H7N4 1312 aaKnown RBP17.32■□□□□ 0.36
USP6NL-202ENST00000379237 DCAF8L2P0C7V8 631 aa17.31■□□□□ 0.36
USP6NL-202ENST00000379237 ZEB1P37275 1124 aaPredicted RBP17.25■□□□□ 0.35
USP6NL-202ENST00000379237 CENPBP07199 599 aaPredicted RBP17.24■□□□□ 0.35
USP6NL-202ENST00000379237 TRIM26Q12899 539 aaPredicted RBP17.07■□□□□ 0.32
USP6NL-202ENST00000379237 GTF3C3Q9Y5Q9 886 aa17.05■□□□□ 0.32
USP6NL-202ENST00000379237 ACIN1Q9UKV3 1341 aaKnown RBP16.97■□□□□ 0.31
USP6NL-202ENST00000379237 CHIC1Q5VXU3 224 aa16.94■□□□□ 0.3
USP6NL-202ENST00000379237 YTHDC1Q96MU7 727 aaKnown RBP16.89■□□□□ 0.29
USP6NL-202ENST00000379237 LOC105371045A0A1W2PR82 267 aa16.86■□□□□ 0.29
USP6NL-202ENST00000379237 NEUROD1Q13562 356 aa16.85■□□□□ 0.29
USP6NL-202ENST00000379237 EHMT2Q96KQ7 1210 aa16.8■□□□□ 0.28
USP6NL-202ENST00000379237 TTBK1Q5TCY1 1321 aaPredicted RBP16.78■□□□□ 0.28
USP6NL-202ENST00000379237 CCER1Q8TC90 406 aaPredicted RBP16.76■□□□□ 0.27
USP6NL-202ENST00000379237 DIEXFQ68CQ4 756 aaKnown RBP16.68■□□□□ 0.26
USP6NL-202ENST00000379237 MYO15BQ96JP2 1530 aa16.62■□□□□ 0.25
USP6NL-202ENST00000379237 FAM9AQ8IZU1 332 aaPredicted RBP16.57■□□□□ 0.24
USP6NL-202ENST00000379237 BCL11AQ9H165 835 aa16.55■□□□□ 0.24
USP6NL-202ENST00000379237 DCAF1Q9Y4B6 1507 aa16.51■□□□□ 0.23
USP6NL-202ENST00000379237 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.49■□□□□ 0.23
USP6NL-202ENST00000379237 ERICH6Q7L0X2 663 aa16.37■□□□□ 0.21
USP6NL-202ENST00000379237 ANP32EQ9BTT0 268 aa16.3■□□□□ 0.2
USP6NL-202ENST00000379237 TRIM41Q8WV44 630 aa16.24■□□□□ 0.19
USP6NL-202ENST00000379237 CCDC180Q9P1Z9 1646 aa16.23■□□□□ 0.19
USP6NL-202ENST00000379237 ZNF316A6NFI3 1004 aaPredicted RBP16.15■□□□□ 0.18
USP6NL-202ENST00000379237 BCANQ96GW7 911 aa16.1■□□□□ 0.17
USP6NL-202ENST00000379237 CSRNP3Q8WYN3 585 aa16.08■□□□□ 0.16
USP6NL-202ENST00000379237 NEFLP07196 543 aa16.06■□□□□ 0.16
USP6NL-202ENST00000379237 MIER1Q8N108 512 aa16.02■□□□□ 0.16
USP6NL-202ENST00000379237 PRKCSHP14314 528 aaPredicted RBP16.01■□□□□ 0.15
USP6NL-202ENST00000379237 CLSPNQ9HAW4 1339 aa15.9■□□□□ 0.14
USP6NL-202ENST00000379237 SUPT16HQ9Y5B9 1047 aaKnown RBP15.89■□□□□ 0.13
USP6NL-202ENST00000379237 TSHZ2Q9NRE2 1034 aa15.87■□□□□ 0.13
USP6NL-202ENST00000379237 HNRNPUL2Q1KMD3 747 aaKnown RBP15.82■□□□□ 0.12
USP6NL-202ENST00000379237 FKBP8Q14318 412 aa15.77■□□□□ 0.12
USP6NL-202ENST00000379237 APLP2Q06481 763 aa15.74■□□□□ 0.11
USP6NL-202ENST00000379237 RTL5Q5HYW3 569 aaPredicted RBP15.66■□□□□ 0.1
USP6NL-202ENST00000379237 ITGAEP38570 1179 aa15.65■□□□□ 0.1
USP6NL-202ENST00000379237 CDK11AQ9UQ88 783 aaPredicted RBP15.63■□□□□ 0.09
USP6NL-202ENST00000379237 RBM19Q9Y4C8 960 aaKnown RBP15.63■□□□□ 0.09
USP6NL-202ENST00000379237 UBTFP17480 764 aaKnown RBP15.62■□□□□ 0.09
USP6NL-202ENST00000379237 MYT1LQ9UL68 1186 aa15.61■□□□□ 0.09
USP6NL-202ENST00000379237 NBR1Q14596 966 aa15.57■□□□□ 0.08
USP6NL-202ENST00000379237 EIF5BO60841 1220 aaKnown RBP15.57■□□□□ 0.08
USP6NL-202ENST00000379237 DEKP35659 375 aaKnown RBP15.54■□□□□ 0.08
USP6NL-202ENST00000379237 RANGAP1P46060 587 aaPredicted RBP15.51■□□□□ 0.07
USP6NL-202ENST00000379237 ANO8Q9HCE9 1232 aaPredicted RBP15.49■□□□□ 0.07
USP6NL-202ENST00000379237 RTN4Q9NQC3 1192 aaKnown RBP15.47■□□□□ 0.07
USP6NL-202ENST00000379237 CCDC136Q96JN2 1154 aa15.45■□□□□ 0.06
USP6NL-202ENST00000379237 TRIM52Q96A61 297 aa15.4■□□□□ 0.06
USP6NL-202ENST00000379237 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.39■□□□□ 0.05
USP6NL-202ENST00000379237 IRX6P78412 446 aaPredicted RBP15.34■□□□□ 0.05
USP6NL-202ENST00000379237 ANP32CO43423 234 aa15.28■□□□□ 0.04
USP6NL-202ENST00000379237 ANP32AP39687 249 aaKnown RBP15.28■□□□□ 0.04
USP6NL-202ENST00000379237 SALL2Q9Y467 1007 aaPredicted RBP15.28■□□□□ 0.04
USP6NL-202ENST00000379237 ZCCHC6Q5VYS8 1495 aaKnown RBP15.28■□□□□ 0.04
USP6NL-202ENST00000379237 DDX10Q13206 875 aaKnown RBP15.27■□□□□ 0.04
USP6NL-202ENST00000379237 ERICH6BQ5W0A0 696 aa15.21■□□□□ 0.03
USP6NL-202ENST00000379237 NOP58Q9Y2X3 529 aaKnown RBP15.21■□□□□ 0.03
USP6NL-202ENST00000379237 ZBTB47Q9UFB7 747 aaPredicted RBP15.2■□□□□ 0.02
USP6NL-202ENST00000379237 MSH5O43196 834 aa15.2■□□□□ 0.02
USP6NL-202ENST00000379237 KCNH8Q96L42 1107 aa15.2■□□□□ 0.02
USP6NL-202ENST00000379237 HNRNPUQ00839 825 aaKnown RBP eCLIP15.16■□□□□ 0.02
USP6NL-202ENST00000379237 NPM2Q86SE8 214 aaKnown RBP15.16■□□□□ 0.02
USP6NL-202ENST00000379237 DAXXQ9UER7 740 aaPredicted RBP15.16■□□□□ 0.02
USP6NL-202ENST00000379237 FANCIQ9NVI1 1328 aa15.16■□□□□ 0.02
USP6NL-202ENST00000379237 GLIPR1L2Q4G1C9 344 aa15.15■□□□□ 0.02
USP6NL-202ENST00000379237 IL27Q8NEV9 243 aa15.06■□□□□ 0
USP6NL-202ENST00000379237 HIRIP3Q9BW71 556 aaPredicted RBP15.05■□□□□ -0
USP6NL-202ENST00000379237 CEP162Q5TB80 1403 aa15.04■□□□□ -0
USP6NL-202ENST00000379237 CNGB1Q14028 1251 aaPredicted RBP15.03■□□□□ -0
USP6NL-202ENST00000379237 B4GALNT3Q6L9W6 998 aa15.02□□□□□ -0.01
USP6NL-202ENST00000379237 NEFMP07197 916 aa15.01□□□□□ -0.01
USP6NL-202ENST00000379237 LAS1LQ9Y4W2 734 aaKnown RBP15□□□□□ -0.01
USP6NL-202ENST00000379237 PPP4R2Q9NY27 417 aa15□□□□□ -0.01
USP6NL-202ENST00000379237 UBE2Q2Q8WVN8 375 aa14.99□□□□□ -0.01
USP6NL-202ENST00000379237 PKNOX2Q96KN3 472 aa14.94□□□□□ -0.02
USP6NL-202ENST00000379237 ATP1B4Q9UN42 357 aaPredicted RBP14.9□□□□□ -0.02
USP6NL-202ENST00000379237 FAM9BQ8IZU0 186 aa14.89□□□□□ -0.03
USP6NL-202ENST00000379237 TIMELESSQ9UNS1 1208 aa14.89□□□□□ -0.03
USP6NL-202ENST00000379237 PAK3O75914 559 aaPredicted RBP14.88□□□□□ -0.03
USP6NL-202ENST00000379237 IPO9Q96P70 1041 aaKnown RBP14.87□□□□□ -0.03
USP6NL-202ENST00000379237 RSF1Q96T23 1441 aaPredicted RBP14.85□□□□□ -0.03
USP6NL-202ENST00000379237 CCER2I3L3R5 266 aa14.83□□□□□ -0.04
USP6NL-202ENST00000379237 POLR3GLQ9BT43 218 aa14.83□□□□□ -0.04
USP6NL-202ENST00000379237 PPM1GO15355 546 aaPredicted RBP14.83□□□□□ -0.04
USP6NL-202ENST00000379237 VSIG10Q8N0Z9 540 aa14.82□□□□□ -0.04
USP6NL-202ENST00000379237 TNIKQ9UKE5 1360 aa14.81□□□□□ -0.04
USP6NL-202ENST00000379237 WRNQ14191 1432 aaPredicted RBP eCLIP14.8□□□□□ -0.04
USP6NL-202ENST00000379237 FAM50AQ14320 339 aaKnown RBP14.79□□□□□ -0.04
USP6NL-202ENST00000379237 ARXQ96QS3 562 aa14.78□□□□□ -0.04
USP6NL-202ENST00000379237 BRPF3Q9ULD4 1205 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms