RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 KIF6Q6ZMV9 814 aa21.99■■□□□ 1.11
CLN3-203ENST00000357806 NECTIN2Q92692 538 aa21.99■■□□□ 1.11
CLN3-203ENST00000357806 BICDL1Q6ZP65 573 aa21.98■■□□□ 1.11
CLN3-203ENST00000357806 MIER1Q8N108 512 aa21.98■■□□□ 1.11
CLN3-203ENST00000357806 TSR2Q969E8 191 aaKnown RBP21.98■■□□□ 1.11
CLN3-203ENST00000357806 GOLGB1Q14789 3259 aaKnown RBP21.98■■□□□ 1.11
CLN3-203ENST00000357806 PDIA6Q15084 440 aa21.97■■□□□ 1.11
CLN3-203ENST00000357806 PXDNLA1KZ92 1463 aa21.97■■□□□ 1.11
CLN3-203ENST00000357806 MAP3K15Q6ZN16 1313 aa21.97■■□□□ 1.11
CLN3-203ENST00000357806 DDX21Q9NR30 783 aaKnown RBP eCLIP21.96■■□□□ 1.11
CLN3-203ENST00000357806 ARFGEF1Q9Y6D6 1849 aa21.96■■□□□ 1.11
CLN3-203ENST00000357806 SERPINB2P05120 415 aa21.96■■□□□ 1.11
CLN3-203ENST00000357806 PROSER3Q2NL68 480 aa21.96■■□□□ 1.11
CLN3-203ENST00000357806 LRP10Q7Z4F1 713 aa21.96■■□□□ 1.11
CLN3-203ENST00000357806 SETDB2Q96T68 719 aa21.96■■□□□ 1.11
CLN3-203ENST00000357806 CHPF2Q9P2E5 772 aa21.96■■□□□ 1.11
CLN3-203ENST00000357806 CACNA1SQ13698 1873 aa21.95■■□□□ 1.11
CLN3-203ENST00000357806 FANCIQ9NVI1 1328 aa21.95■■□□□ 1.1
CLN3-203ENST00000357806 ERVV-1B6SEH8 477 aa21.95■■□□□ 1.1
CLN3-203ENST00000357806 ANXA1P04083 346 aa21.95■■□□□ 1.1
CLN3-203ENST00000357806 TTLL7Q6ZT98 887 aa21.95■■□□□ 1.1
CLN3-203ENST00000357806 C8orf58Q8NAV2 365 aa21.95■■□□□ 1.1
CLN3-203ENST00000357806 DBF4Q9UBU7 674 aaPredicted RBP21.95■■□□□ 1.1
CLN3-203ENST00000357806 COL11A2P13942 1736 aaPredicted RBP21.95■■□□□ 1.1
CLN3-203ENST00000357806 ELL2O00472 640 aaPredicted RBP21.94■■□□□ 1.1
CLN3-203ENST00000357806 TGFB2P61812 414 aa21.94■■□□□ 1.1
CLN3-203ENST00000357806 CHMP4AQ9BY43 222 aa21.94■■□□□ 1.1
CLN3-203ENST00000357806 UTRNP46939 3433 aa21.94■■□□□ 1.1
CLN3-203ENST00000357806 ATP10DQ9P241 1426 aa21.93■■□□□ 1.1
CLN3-203ENST00000357806 ZNF521Q96K83 1311 aa21.93■■□□□ 1.1
CLN3-203ENST00000357806 HLFQ16534 295 aa21.92■■□□□ 1.1
CLN3-203ENST00000357806 ZBTB3Q9H5J0 574 aa21.92■■□□□ 1.1
CLN3-203ENST00000357806 PELP1Q8IZL8 1130 aaKnown RBP21.91■■□□□ 1.1
CLN3-203ENST00000357806 MYH16Q9H6N6 1097 aa21.91■■□□□ 1.1
CLN3-203ENST00000357806 NIP7Q9Y221 180 aaKnown RBP eCLIP21.91■■□□□ 1.1
CLN3-203ENST00000357806 NPHP1O15259 732 aa21.9■■□□□ 1.1
CLN3-203ENST00000357806 GPR162Q16538 588 aa21.9■■□□□ 1.1
CLN3-203ENST00000357806 TSPYL6Q8N831 410 aa21.9■■□□□ 1.1
CLN3-203ENST00000357806 HYPKQ9NX55 129 aa21.9■■□□□ 1.1
CLN3-203ENST00000357806 GOLGA2Q08379 1002 aa21.9■■□□□ 1.1
CLN3-203ENST00000357806 AIMP1Q12904 312 aaKnown RBP21.9■■□□□ 1.1
CLN3-203ENST00000357806 TWISTNBQ3B726 338 aaPredicted RBP21.9■■□□□ 1.1
CLN3-203ENST00000357806 CCDC30Q5VVM6 783 aa21.9■■□□□ 1.1
CLN3-203ENST00000357806 COPS6Q7L5N1 327 aa21.9■■□□□ 1.1
CLN3-203ENST00000357806 CNBD1Q8NA66 436 aa21.9■■□□□ 1.1
CLN3-203ENST00000357806 XAGE3Q8WTP9 111 aa21.9■■□□□ 1.1
CLN3-203ENST00000357806 PRR5LQ6MZQ0 368 aa21.89■■□□□ 1.09
CLN3-203ENST00000357806 GIGYF2Q6Y7W6 1299 aaKnown RBP21.89■■□□□ 1.09
CLN3-203ENST00000357806 ST5P78524 1137 aa21.88■■□□□ 1.09
CLN3-203ENST00000357806 NBPF5PQ86XG9 351 aaPredicted RBP21.88■■□□□ 1.09
CLN3-203ENST00000357806 SPINK5Q9NQ38 1064 aaPredicted RBP21.88■■□□□ 1.09
CLN3-203ENST00000357806 A0A0G2JLW4 131 aa21.87■■□□□ 1.09
CLN3-203ENST00000357806 TNRC6CQ9HCJ0 1690 aaKnown RBP21.86■■□□□ 1.09
CLN3-203ENST00000357806 DPEP1P16444 411 aa21.86■■□□□ 1.09
CLN3-203ENST00000357806 IBTKQ9P2D0 1353 aaPredicted RBP21.86■■□□□ 1.09
CLN3-203ENST00000357806 YBX3P16989 372 aaKnown RBP eCLIP21.85■■□□□ 1.09
CLN3-203ENST00000357806 HSP90AB3PQ58FF7 597 aa21.85■■□□□ 1.09
CLN3-203ENST00000357806 STK31Q9BXU1 1019 aa21.85■■□□□ 1.09
CLN3-203ENST00000357806 LAMB2P55268 1798 aa21.85■■□□□ 1.09
CLN3-203ENST00000357806 GPTP24298 496 aa21.84■■□□□ 1.09
CLN3-203ENST00000357806 EXOSC9Q06265 439 aaKnown RBP21.84■■□□□ 1.09
CLN3-203ENST00000357806 TPTE2Q6XPS3 522 aa21.84■■□□□ 1.09
CLN3-203ENST00000357806 NYXQ9GZU5 481 aa21.84■■□□□ 1.09
CLN3-203ENST00000357806 WWC3Q9ULE0 1092 aa21.84■■□□□ 1.09
CLN3-203ENST00000357806 ZNF34Q8IZ26 560 aa21.83■■□□□ 1.09
CLN3-203ENST00000357806 PLBD2Q8NHP8 589 aa21.83■■□□□ 1.09
CLN3-203ENST00000357806 BRIP1Q9BX63 1249 aa21.83■■□□□ 1.09
CLN3-203ENST00000357806 UBN2Q6ZU65 1347 aa21.83■■□□□ 1.09
CLN3-203ENST00000357806 FAM177BA6PVY3 158 aa21.83■■□□□ 1.08
CLN3-203ENST00000357806 E9PSI1 815 aa21.83■■□□□ 1.08
CLN3-203ENST00000357806 GRIN3BO60391 1043 aa21.83■■□□□ 1.08
CLN3-203ENST00000357806 CHRNA5P30532 468 aa21.83■■□□□ 1.08
CLN3-203ENST00000357806 PDE6BP35913 854 aa21.83■■□□□ 1.08
CLN3-203ENST00000357806 ANKRD13DQ6ZTN6 518 aa21.83■■□□□ 1.08
CLN3-203ENST00000357806 PDZRN3Q9UPQ7 1066 aa21.83■■□□□ 1.08
CLN3-203ENST00000357806 KCNA3P22001 575 aa21.82■■□□□ 1.08
CLN3-203ENST00000357806 PARP10Q53GL7 1025 aa21.82■■□□□ 1.08
CLN3-203ENST00000357806 CCDC24Q8N4L8 307 aa21.82■■□□□ 1.08
CLN3-203ENST00000357806 PHAXQ9H814 394 aaKnown RBP21.82■■□□□ 1.08
CLN3-203ENST00000357806 PIM2Q9P1W9 311 aa21.82■■□□□ 1.08
CLN3-203ENST00000357806 DDX60Q8IY21 1712 aaKnown RBP21.81■■□□□ 1.08
CLN3-203ENST00000357806 GTF2E1P29083 439 aaPredicted RBP21.81■■□□□ 1.08
CLN3-203ENST00000357806 C2CD5Q86YS7 1000 aa21.81■■□□□ 1.08
CLN3-203ENST00000357806 H0YIN7 160 aa21.8■■□□□ 1.08
CLN3-203ENST00000357806 VAMP4O75379 141 aa21.8■■□□□ 1.08
CLN3-203ENST00000357806 PPP1R42Q7Z4L9 355 aa21.8■■□□□ 1.08
CLN3-203ENST00000357806 BCS1LQ9Y276 419 aa21.8■■□□□ 1.08
CLN3-203ENST00000357806 RIC1Q4ADV7 1423 aa21.79■■□□□ 1.08
CLN3-203ENST00000357806 DDX58O95786 925 aaKnown RBP21.79■■□□□ 1.08
CLN3-203ENST00000357806 TCIRG1Q13488 830 aa21.79■■□□□ 1.08
CLN3-203ENST00000357806 TCERG1O14776 1098 aaKnown RBP21.78■■□□□ 1.08
CLN3-203ENST00000357806 SUSD4Q5VX71 490 aa21.78■■□□□ 1.08
CLN3-203ENST00000357806 RIC3Q7Z5B4 369 aa21.78■■□□□ 1.08
CLN3-203ENST00000357806 CCDC88AQ3V6T2 1871 aa21.78■■□□□ 1.08
CLN3-203ENST00000357806 ABCC12Q96J65 1359 aa21.78■■□□□ 1.08
CLN3-203ENST00000357806 SLX4Q8IY92 1834 aa21.78■■□□□ 1.08
CLN3-203ENST00000357806 RNF123Q5XPI4 1314 aa21.78■■□□□ 1.08
CLN3-203ENST00000357806 NTSR2O95665 410 aa21.77■■□□□ 1.08
CLN3-203ENST00000357806 SLFN5Q08AF3 891 aa21.77■■□□□ 1.08
CLN3-203ENST00000357806 DALRD3Q5D0E6 543 aaKnown RBP21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms