RNA–Protein interactions for RNA: ENST00000307106.3

SMIM4-201, Transcript of small integral membrane protein 4, humanhuman

TSL 2 BASIC

Gene SMIM4, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM4-201ENST00000307106 HACL1Q9UJ83 578 aa16.21■□□□□ 0.19
SMIM4-201ENST00000307106 RNMTO43148 476 aaKnown RBP16.2■□□□□ 0.18
SMIM4-201ENST00000307106 EPHX2P34913 555 aa16.2■□□□□ 0.18
SMIM4-201ENST00000307106 ZNF541Q9H0D2 1346 aa16.19■□□□□ 0.18
SMIM4-201ENST00000307106 NPHP1O15259 732 aa16.19■□□□□ 0.18
SMIM4-201ENST00000307106 STARD3NLO95772 234 aa16.19■□□□□ 0.18
SMIM4-201ENST00000307106 SRGNP10124 158 aa16.19■□□□□ 0.18
SMIM4-201ENST00000307106 MAP1SQ66K74 1059 aaPredicted RBP16.19■□□□□ 0.18
SMIM4-201ENST00000307106 CNTROBQ8N137 903 aa16.19■□□□□ 0.18
SMIM4-201ENST00000307106 CNBD1Q8NA66 436 aa16.19■□□□□ 0.18
SMIM4-201ENST00000307106 MASTLQ96GX5 879 aa16.19■□□□□ 0.18
SMIM4-201ENST00000307106 ABT1Q9ULW3 272 aaKnown RBP16.19■□□□□ 0.18
SMIM4-201ENST00000307106 ST5P78524 1137 aa16.18■□□□□ 0.18
SMIM4-201ENST00000307106 PNMA8AQ86V59 439 aaPredicted RBP16.18■□□□□ 0.18
SMIM4-201ENST00000307106 TBC1D2BQ9UPU7 963 aa16.18■□□□□ 0.18
SMIM4-201ENST00000307106 ZNF330Q9Y3S2 320 aaPredicted RBP16.18■□□□□ 0.18
SMIM4-201ENST00000307106 LTBP1Q14766 1721 aa16.17■□□□□ 0.18
SMIM4-201ENST00000307106 IL13P35225 146 aa16.17■□□□□ 0.18
SMIM4-201ENST00000307106 CCDC93Q567U6 631 aa16.17■□□□□ 0.18
SMIM4-201ENST00000307106 SETDB2Q96T68 719 aa16.17■□□□□ 0.18
SMIM4-201ENST00000307106 RNF123Q5XPI4 1314 aa16.17■□□□□ 0.18
SMIM4-201ENST00000307106 PDE4DIPQ5VU43 2346 aa16.16■□□□□ 0.18
SMIM4-201ENST00000307106 BEGAINQ9BUH8 593 aa16.16■□□□□ 0.18
SMIM4-201ENST00000307106 FKBP4Q02790 459 aaKnown RBP eCLIP16.15■□□□□ 0.18
SMIM4-201ENST00000307106 TTC5Q8N0Z6 440 aa16.15■□□□□ 0.18
SMIM4-201ENST00000307106 C7orf43Q8WVR3 580 aa16.15■□□□□ 0.18
SMIM4-201ENST00000307106 ZNF277Q9NRM2 450 aaPredicted RBP16.15■□□□□ 0.18
SMIM4-201ENST00000307106 TNRC18O15417 2968 aaPredicted RBP16.14■□□□□ 0.17
SMIM4-201ENST00000307106 IL6STP40189 918 aaPredicted RBP16.14■□□□□ 0.17
SMIM4-201ENST00000307106 PAXIP1Q6ZW49 1069 aaPredicted RBP16.14■□□□□ 0.17
SMIM4-201ENST00000307106 MORC1Q86VD1 984 aa16.14■□□□□ 0.17
SMIM4-201ENST00000307106 CAPNS2Q96L46 248 aa16.14■□□□□ 0.17
SMIM4-201ENST00000307106 ECE1P42892 770 aa16.13■□□□□ 0.17
SMIM4-201ENST00000307106 GRM1Q13255 1194 aa16.13■□□□□ 0.17
SMIM4-201ENST00000307106 CFAP44Q96MT7 982 aa16.13■□□□□ 0.17
SMIM4-201ENST00000307106 PANK3Q9H999 370 aa16.13■□□□□ 0.17
SMIM4-201ENST00000307106 DDX21Q9NR30 783 aaKnown RBP eCLIP16.13■□□□□ 0.17
SMIM4-201ENST00000307106 HEG1Q9ULI3 1381 aa16.13■□□□□ 0.17
SMIM4-201ENST00000307106 CAMTA2O94983 1202 aa16.12■□□□□ 0.17
SMIM4-201ENST00000307106 HMOX1P09601 288 aa16.12■□□□□ 0.17
SMIM4-201ENST00000307106 MTHFSDQ2M296 383 aaKnown RBP16.12■□□□□ 0.17
SMIM4-201ENST00000307106 NPM2Q86SE8 214 aaKnown RBP16.12■□□□□ 0.17
SMIM4-201ENST00000307106 FZD9O00144 591 aa16.11■□□□□ 0.17
SMIM4-201ENST00000307106 CYP4F22Q6NT55 531 aa16.11■□□□□ 0.17
SMIM4-201ENST00000307106 GPC2Q8N158 579 aa16.11■□□□□ 0.17
SMIM4-201ENST00000307106 ZNF496Q96IT1 587 aaPredicted RBP16.11■□□□□ 0.17
SMIM4-201ENST00000307106 GPR101Q96P66 508 aaPredicted RBP16.11■□□□□ 0.17
SMIM4-201ENST00000307106 TEX13AQ9BXU3 409 aaPredicted RBP16.11■□□□□ 0.17
SMIM4-201ENST00000307106 TSKSQ9UJT2 592 aa16.11■□□□□ 0.17
SMIM4-201ENST00000307106 NPR1P16066 1061 aa16.1■□□□□ 0.17
SMIM4-201ENST00000307106 IARSP41252 1262 aaKnown RBP16.1■□□□□ 0.17
SMIM4-201ENST00000307106 OLFM4Q6UX06 510 aa16.1■□□□□ 0.17
SMIM4-201ENST00000307106 RTKN2Q8IZC4 609 aa16.1■□□□□ 0.17
SMIM4-201ENST00000307106 A1BGP04217 495 aa16.09■□□□□ 0.17
SMIM4-201ENST00000307106 FMR1Q06787 632 aaKnown RBP eCLIP16.09■□□□□ 0.17
SMIM4-201ENST00000307106 ZNF790Q6PG37 636 aa16.09■□□□□ 0.17
SMIM4-201ENST00000307106 NBPF5PQ86XG9 351 aaPredicted RBP16.09■□□□□ 0.17
SMIM4-201ENST00000307106 DZIP3Q86Y13 1208 aaKnown RBP16.08■□□□□ 0.16
SMIM4-201ENST00000307106 SYNE4Q8N205 404 aa16.08■□□□□ 0.16
SMIM4-201ENST00000307106 MCOLN1Q9GZU1 580 aa16.08■□□□□ 0.16
SMIM4-201ENST00000307106 COL4A5P29400 1685 aa16.08■□□□□ 0.16
SMIM4-201ENST00000307106 NUP98P52948 1817 aa16.08■□□□□ 0.16
SMIM4-201ENST00000307106 LMOD1P29536 600 aaPredicted RBP16.07■□□□□ 0.16
SMIM4-201ENST00000307106 JDP2Q8WYK2 163 aa16.07■□□□□ 0.16
SMIM4-201ENST00000307106 GJA3Q9Y6H8 435 aa16.07■□□□□ 0.16
SMIM4-201ENST00000307106 AKAP11Q9UKA4 1901 aa16.06■□□□□ 0.16
SMIM4-201ENST00000307106 MAP2K2P36507 400 aa16.06■□□□□ 0.16
SMIM4-201ENST00000307106 TEFQ10587 303 aa16.06■□□□□ 0.16
SMIM4-201ENST00000307106 CST9Q5W186 159 aa16.06■□□□□ 0.16
SMIM4-201ENST00000307106 FMNL2Q96PY5 1086 aa16.06■□□□□ 0.16
SMIM4-201ENST00000307106 TLL2Q9Y6L7 1015 aa16.06■□□□□ 0.16
SMIM4-201ENST00000307106 SNED1Q8TER0 1413 aa16.05■□□□□ 0.16
SMIM4-201ENST00000307106 KLRG2A4D1S0 409 aaPredicted RBP16.05■□□□□ 0.16
SMIM4-201ENST00000307106 AOC2O75106 756 aa16.05■□□□□ 0.16
SMIM4-201ENST00000307106 EIF6P56537 245 aaKnown RBP16.05■□□□□ 0.16
SMIM4-201ENST00000307106 TRAF5O00463 557 aa16.04■□□□□ 0.16
SMIM4-201ENST00000307106 CA12O43570 354 aa16.04■□□□□ 0.16
SMIM4-201ENST00000307106 CLEC4GQ6UXB4 293 aa16.04■□□□□ 0.16
SMIM4-201ENST00000307106 TPTE2Q6XPS3 522 aa16.04■□□□□ 0.16
SMIM4-201ENST00000307106 ZNF652Q9Y2D9 606 aa16.04■□□□□ 0.16
SMIM4-201ENST00000307106 ALDH1B1P30837 517 aa16.03■□□□□ 0.16
SMIM4-201ENST00000307106 EPS15P42566 896 aa16.03■□□□□ 0.16
SMIM4-201ENST00000307106 PIP4K2AP48426 406 aaPredicted RBP16.03■□□□□ 0.16
SMIM4-201ENST00000307106 SCNN1DP51172 638 aa16.03■□□□□ 0.16
SMIM4-201ENST00000307106 DGKZQ13574 1117 aa16.03■□□□□ 0.16
SMIM4-201ENST00000307106 IL17REQ8NFR9 667 aa16.03■□□□□ 0.16
SMIM4-201ENST00000307106 PSMD1Q99460 953 aa16.03■□□□□ 0.16
SMIM4-201ENST00000307106 POLR2AP24928 1970 aaKnown RBP16.03■□□□□ 0.16
SMIM4-201ENST00000307106 USP50Q70EL3 339 aaPredicted RBP16.02■□□□□ 0.16
SMIM4-201ENST00000307106 NIP7Q9Y221 180 aaKnown RBP eCLIP16.02■□□□□ 0.16
SMIM4-201ENST00000307106 LAMB4A4D0S4 1761 aa16.02■□□□□ 0.15
SMIM4-201ENST00000307106 FAM177BA6PVY3 158 aa16.01■□□□□ 0.15
SMIM4-201ENST00000307106 GNAT3A8MTJ3 354 aa16.01■□□□□ 0.15
SMIM4-201ENST00000307106 KNSTRNQ9Y448 316 aa16.01■□□□□ 0.15
SMIM4-201ENST00000307106 DIAPH1O60610 1272 aaKnown RBP16■□□□□ 0.15
SMIM4-201ENST00000307106 BRPF1P55201 1214 aaPredicted RBP16■□□□□ 0.15
SMIM4-201ENST00000307106 SAPCD2Q86UD0 394 aa16■□□□□ 0.15
SMIM4-201ENST00000307106 USP16Q9Y5T5 823 aa16■□□□□ 0.15
SMIM4-201ENST00000307106 KCNQ3O43525 872 aa15.99■□□□□ 0.15
SMIM4-201ENST00000307106 BTBD11A6QL63 1104 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms