RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 CNNM3Q8NE01 707 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 CEP63Q96MT8 703 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 RAI14Q9P0K7 980 aa8.81□□□□□ -1
SF3B3-201ENST00000302516 PRPHP41219 470 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 STXBP4Q6ZWJ1 553 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 BAG4O95429 457 aaKnown RBP8.8□□□□□ -1
SF3B3-201ENST00000302516 KIF5BP33176 963 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 HSPA4P34932 840 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 TTC21AQ8NDW8 1320 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 KCNH5Q8NCM2 988 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 TTC12Q9H892 705 aaPredicted RBP8.8□□□□□ -1
SF3B3-201ENST00000302516 NEBLO76041 1014 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 PIP4K2BP78356 416 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 CTCFLQ8NI51 663 aaPredicted RBP8.8□□□□□ -1
SF3B3-201ENST00000302516 GSTTP1A0A1W2PQM5 241 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 RNF187Q5TA31 235 aaPredicted RBP8.8□□□□□ -1
SF3B3-201ENST00000302516 FSIP1Q8NA03 581 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 SNX21Q969T3 373 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 PIK3R4Q99570 1358 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 ARHGEF11O15085 1522 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 PEG3Q9GZU2 1588 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 KDM4AO75164 1064 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 RBM25P49756 843 aaKnown RBP8.8□□□□□ -1
SF3B3-201ENST00000302516 TMC6Q7Z403 805 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 CABP1Q9NZU7 370 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 LRP2BPQ9P2M1 347 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 GOLGA8BA8MQT2 603 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 OPA1O60313 960 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 ZNF652Q9Y2D9 606 aa8.8□□□□□ -1
SF3B3-201ENST00000302516 TTC22Q5TAA0 569 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 SLF2Q8IX21 1173 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 USP25Q9UHP3 1055 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 V9GYY5 206 aaPredicted RBP8.79□□□□□ -1
SF3B3-201ENST00000302516 GOPCQ9HD26 462 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 SSFA2P28290 1259 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 TBC1D9Q6ZT07 1266 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 CCDC94Q9BW85 323 aaPredicted RBP8.79□□□□□ -1
SF3B3-201ENST00000302516 KCNG4Q8TDN1 519 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 SLC12A5Q9H2X9 1139 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 SSBP05455 408 aaKnown RBP eCLIP8.79□□□□□ -12e-6■■□□□ 12.9
SF3B3-201ENST00000302516 MATR3P43243 847 aaKnown RBP eCLIP8.79□□□□□ -1
SF3B3-201ENST00000302516 TTC14Q96N46 770 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 CATIPQ7Z7H3 387 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 SSH1Q8WYL5 1049 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 FERMT1Q9BQL6 677 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 NAPBQ9H115 298 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 DUSP27Q5VZP5 1158 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 ARHGAP45Q92619 1136 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 ZNF165P49910 485 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 FAM200AQ8TCP9 573 aa8.79□□□□□ -1
SF3B3-201ENST00000302516 UGGT2Q9NYU1 1516 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 ATP2B2Q01814 1243 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 MAP3K12Q12852 859 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 FSD2A1L4K1 749 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 SPAG1Q07617 926 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 SAMD1Q6SPF0 538 aaPredicted RBP8.78□□□□□ -1
SF3B3-201ENST00000302516 IQCA1Q86XH1 822 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 CTAGE9A4FU28 777 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 GJB2P29033 226 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 NUCB1Q02818 461 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 ESCO1Q5FWF5 840 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 THEMISQ8N1K5 641 aaPredicted RBP8.78□□□□□ -1
SF3B3-201ENST00000302516 CCDC113Q9H0I3 377 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 CALML4Q96GE6 196 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 STARD3NLO95772 234 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 GTF2F1P35269 517 aaKnown RBP eCLIP8.78□□□□□ -1
SF3B3-201ENST00000302516 SSR1P43307 286 aaKnown RBP8.78□□□□□ -1
SF3B3-201ENST00000302516 LMAN1P49257 510 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 CCDC155Q8N6L0 562 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 ZMYM4Q5VZL5 1548 aa8.78□□□□□ -1
SF3B3-201ENST00000302516 FMNL3Q8IVF7 1028 aa8.77□□□□□ -1
SF3B3-201ENST00000302516 CUL5Q93034 780 aa8.77□□□□□ -1
SF3B3-201ENST00000302516 KIF1BO60333 1816 aa8.77□□□□□ -1
SF3B3-201ENST00000302516 CCDC194A0A1B0GVG4 234 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 SLC5A1P13866 664 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 NUTM2GQ5VZR2 741 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 GOLGA1Q92805 767 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 MSL1Q68DK7 614 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.77□□□□□ -1.014e-47■■□□□ 12.1
SF3B3-201ENST00000302516 TSGA10Q9BZW7 698 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 A6NNZ2 444 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 ZSCAN22P10073 491 aaPredicted RBP8.77□□□□□ -1.01
SF3B3-201ENST00000302516 TUBB8Q3ZCM7 444 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 CAVIN4Q5BKX8 364 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 CCDC102BQ68D86 513 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 MAATS1Q7Z4T9 603 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 TAF7Q15545 349 aaPredicted RBP8.77□□□□□ -1.01
SF3B3-201ENST00000302516 TCP11L1Q9NUJ3 509 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 ABCC5O15440 1437 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 MYL6BP14649 208 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 KLHL10Q6JEL2 608 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 PLXNC1O60486 1568 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 TRIM27P14373 513 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 HLTFQ14527 1009 aaKnown RBP eCLIP8.77□□□□□ -1.01
SF3B3-201ENST00000302516 MPNDQ8N594 471 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 EXOC6BQ9Y2D4 811 aa8.77□□□□□ -1.01
SF3B3-201ENST00000302516 NUTM1Q86Y26 1132 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 SELENOOQ9BVL4 669 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 PRDM10Q9NQV6 1147 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 METTL24Q5JXM2 366 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms