RNA–Protein interactions for RNA: ENST00000302190.8

SDC2-201, Transcript of syndecan 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC2, Length 3,759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-201ENST00000302190 RNF20Q5VTR2 975 aa16.78■□□□□ 0.28
SDC2-201ENST00000302190 PHF23Q9BUL5 403 aaPredicted RBP16.78■□□□□ 0.28
SDC2-201ENST00000302190 PRDM10Q9NQV6 1147 aa16.78■□□□□ 0.28
SDC2-201ENST00000302190 PALD1Q9ULE6 856 aa16.78■□□□□ 0.28
SDC2-201ENST00000302190 KIF1BPQ96EK5 621 aa16.78■□□□□ 0.28
SDC2-201ENST00000302190 HDAC5Q9UQL6 1122 aa16.78■□□□□ 0.28
SDC2-201ENST00000302190 MAP7D2Q96T17 732 aa16.77■□□□□ 0.28
SDC2-201ENST00000302190 CADPS2Q86UW7 1296 aa16.77■□□□□ 0.27
SDC2-201ENST00000302190 CREBRFQ8IUR6 639 aa16.77■□□□□ 0.27
SDC2-201ENST00000302190 RHPN1Q8TCX5 695 aa16.77■□□□□ 0.27
SDC2-201ENST00000302190 TTC12Q9H892 705 aaPredicted RBP16.77■□□□□ 0.27
SDC2-201ENST00000302190 USP48Q86UV5 1035 aa16.76■□□□□ 0.27
SDC2-201ENST00000302190 CHMP4AQ9BY43 222 aa16.76■□□□□ 0.27
SDC2-201ENST00000302190 STRCQ7RTU9 1775 aa16.76■□□□□ 0.27
SDC2-201ENST00000302190 RAB11FIP3O75154 756 aa16.76■□□□□ 0.27
SDC2-201ENST00000302190 SASS6Q6UVJ0 657 aa16.76■□□□□ 0.27
SDC2-201ENST00000302190 DNAAF4Q8WXU2 420 aa16.76■□□□□ 0.27
SDC2-201ENST00000302190 ITSN1Q15811 1721 aa16.76■□□□□ 0.27
SDC2-201ENST00000302190 GCP02774 474 aa16.76■□□□□ 0.27
SDC2-201ENST00000302190 FAM173BQ6P4H8 233 aa16.76■□□□□ 0.27
SDC2-201ENST00000302190 BRINP3Q76B58 766 aa16.76■□□□□ 0.27
SDC2-201ENST00000302190 APPP05067 770 aa16.75■□□□□ 0.27
SDC2-201ENST00000302190 PDIA4P13667 645 aaKnown RBP16.75■□□□□ 0.27
SDC2-201ENST00000302190 PRDM4Q9UKN5 801 aa16.75■□□□□ 0.27
SDC2-201ENST00000302190 AXIN2Q9Y2T1 843 aa16.75■□□□□ 0.27
SDC2-201ENST00000302190 CHL1O00533 1208 aa16.75■□□□□ 0.27
SDC2-201ENST00000302190 GUCY1B3Q02153 619 aa16.75■□□□□ 0.27
SDC2-201ENST00000302190 BLOC1S2Q6QNY1 142 aa16.75■□□□□ 0.27
SDC2-201ENST00000302190 WASHC4Q2M389 1173 aa16.74■□□□□ 0.27
SDC2-201ENST00000302190 CWF19L2Q2TBE0 894 aaKnown RBP16.74■□□□□ 0.27
SDC2-201ENST00000302190 PLEKHO1Q53GL0 409 aaPredicted RBP16.74■□□□□ 0.27
SDC2-201ENST00000302190 C17orf53Q8N3J3 647 aaPredicted RBP16.74■□□□□ 0.27
SDC2-201ENST00000302190 LRRC2Q9BYS8 371 aa16.74■□□□□ 0.27
SDC2-201ENST00000302190 C1orf167Q5SNV9 1468 aa16.74■□□□□ 0.27
SDC2-201ENST00000302190 HTATSF1O43719 755 aaKnown RBP16.74■□□□□ 0.27
SDC2-201ENST00000302190 CHMLP26374 656 aa16.74■□□□□ 0.27
SDC2-201ENST00000302190 TMEM63CQ9P1W3 806 aa16.74■□□□□ 0.27
SDC2-201ENST00000302190 GADD45BO75293 160 aaPredicted RBP16.73■□□□□ 0.27
SDC2-201ENST00000302190 MAP3K2Q9Y2U5 619 aa16.73■□□□□ 0.27
SDC2-201ENST00000302190 KIF20BQ96Q89 1820 aa16.73■□□□□ 0.27
SDC2-201ENST00000302190 SLC39A6Q13433 755 aa16.73■□□□□ 0.27
SDC2-201ENST00000302190 LMBRD1Q9NUN5 540 aa16.73■□□□□ 0.27
SDC2-201ENST00000302190 FSD2A1L4K1 749 aa16.73■□□□□ 0.27
SDC2-201ENST00000302190 GJB2P29033 226 aa16.73■□□□□ 0.27
SDC2-201ENST00000302190 UNC5CLQ8IV45 518 aa16.73■□□□□ 0.27
SDC2-201ENST00000302190 ABCC4O15439 1325 aa16.72■□□□□ 0.27
SDC2-201ENST00000302190 STX6O43752 255 aa16.72■□□□□ 0.27
SDC2-201ENST00000302190 HOXC9P31274 260 aa16.72■□□□□ 0.27
SDC2-201ENST00000302190 LRSAM1Q6UWE0 723 aa16.72■□□□□ 0.27
SDC2-201ENST00000302190 LIMCH1Q9UPQ0 1083 aa16.72■□□□□ 0.27
SDC2-201ENST00000302190 COL3A1P02461 1466 aaPredicted RBP16.72■□□□□ 0.27
SDC2-201ENST00000302190 NBPF7P0C2Y1 421 aaPredicted RBP16.72■□□□□ 0.27
SDC2-201ENST00000302190 ATP8B2P98198 1209 aa16.72■□□□□ 0.27
SDC2-201ENST00000302190 SDF4Q9BRK5 362 aa16.72■□□□□ 0.27
SDC2-201ENST00000302190 ATP5J2-PTCD1G3V325 749 aa16.72■□□□□ 0.27
SDC2-201ENST00000302190 PTCD1O75127 700 aaKnown RBP16.72■□□□□ 0.27
SDC2-201ENST00000302190 GLRX3O76003 335 aaKnown RBP16.72■□□□□ 0.27
SDC2-201ENST00000302190 DNM1Q05193 864 aaKnown RBP16.72■□□□□ 0.27
SDC2-201ENST00000302190 TNMDQ9H2S6 317 aa16.72■□□□□ 0.27
SDC2-201ENST00000302190 ADCY5O95622 1261 aa16.71■□□□□ 0.27
SDC2-201ENST00000302190 KLHDC4Q8TBB5 520 aa16.71■□□□□ 0.27
SDC2-201ENST00000302190 ERBB4Q15303 1308 aa16.71■□□□□ 0.27
SDC2-201ENST00000302190 KRT85P78386 507 aa16.71■□□□□ 0.27
SDC2-201ENST00000302190 CPLX1O14810 134 aa16.71■□□□□ 0.26
SDC2-201ENST00000302190 NRDCO43847 1150 aa16.71■□□□□ 0.26
SDC2-201ENST00000302190 FILIP1Q7Z7B0 1213 aa16.71■□□□□ 0.26
SDC2-201ENST00000302190 SYTL4Q96C24 671 aaPredicted RBP16.71■□□□□ 0.26
SDC2-201ENST00000302190 AK2P54819 239 aa16.7■□□□□ 0.26
SDC2-201ENST00000302190 NDUFB9Q9Y6M9 179 aa16.7■□□□□ 0.26
SDC2-201ENST00000302190 TTC21AQ8NDW8 1320 aa16.7■□□□□ 0.26
SDC2-201ENST00000302190 TULP1O00294 542 aaPredicted RBP16.7■□□□□ 0.26
SDC2-201ENST00000302190 RAB11FIP4Q86YS3 637 aa16.7■□□□□ 0.26
SDC2-201ENST00000302190 TSC1Q92574 1164 aa16.7■□□□□ 0.26
SDC2-201ENST00000302190 SPATA32Q96LK8 384 aa16.7■□□□□ 0.26
SDC2-201ENST00000302190 NSFL1CQ9UNZ2 370 aaKnown RBP16.7■□□□□ 0.26
SDC2-201ENST00000302190 ATP2B1P20020 1258 aa16.69■□□□□ 0.26
SDC2-201ENST00000302190 LGR6Q9HBX8 967 aa16.69■□□□□ 0.26
SDC2-201ENST00000302190 STRN4Q9NRL3 753 aa16.69■□□□□ 0.26
SDC2-201ENST00000302190 PSMA5P28066 241 aa16.69■□□□□ 0.26
SDC2-201ENST00000302190 NBPF6Q5VWK0 638 aa16.69■□□□□ 0.26
SDC2-201ENST00000302190 NBPF4Q96M43 638 aa16.69■□□□□ 0.26
SDC2-201ENST00000302190 FMN2Q9NZ56 1722 aa16.69■□□□□ 0.26
SDC2-201ENST00000302190 CCDC192P0DO97 292 aa16.69■□□□□ 0.26
SDC2-201ENST00000302190 IQSEC2Q5JU85 1478 aa16.69■□□□□ 0.26
SDC2-201ENST00000302190 OVOS2A0A0J9YW53 1432 aa16.69■□□□□ 0.26
SDC2-201ENST00000302190 OVOS2Q6IE36 1432 aa16.69■□□□□ 0.26
SDC2-201ENST00000302190 NUTM2BA6NNL0 878 aaPredicted RBP16.68■□□□□ 0.26
SDC2-201ENST00000302190 NUTM2EB1AL46 878 aaPredicted RBP16.68■□□□□ 0.26
SDC2-201ENST00000302190 NUTM2AQ8IVF1 878 aaPredicted RBP16.68■□□□□ 0.26
SDC2-201ENST00000302190 MYD88Q99836 296 aa16.68■□□□□ 0.26
SDC2-201ENST00000302190 ADGRB2O60241 1585 aa16.68■□□□□ 0.26
SDC2-201ENST00000302190 LRRC7Q96NW7 1537 aa16.68■□□□□ 0.26
SDC2-201ENST00000302190 FKBP4Q02790 459 aaKnown RBP eCLIP16.68■□□□□ 0.267e-6■□□□□ 9.9
SDC2-201ENST00000302190 GPT2Q8TD30 523 aa16.68■□□□□ 0.26
SDC2-201ENST00000302190 RTL1A6NKG5 1358 aa16.68■□□□□ 0.26
SDC2-201ENST00000302190 MST1RQ04912 1400 aa16.68■□□□□ 0.26
SDC2-201ENST00000302190 SSH2Q76I76 1423 aa16.68■□□□□ 0.26
SDC2-201ENST00000302190 CDK11BP21127 795 aaKnown RBP16.68■□□□□ 0.26
SDC2-201ENST00000302190 CCDC73Q6ZRK6 1079 aa16.68■□□□□ 0.26
SDC2-201ENST00000302190 GOLGB1Q14789 3259 aaKnown RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms