RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 RTF1Q92541 710 aaKnown RBP12.95□□□□□ -0.34
ZNF558-201ENST00000301475 PPP6R1Q9UPN7 881 aa12.95□□□□□ -0.34
ZNF558-201ENST00000301475 FOXO3O43524 673 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 TERF2Q15554 542 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 ADCK5Q3MIX3 580 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 FERMT3Q86UX7 667 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 GNAI3P08754 354 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 KMT5BQ4FZB7 885 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 TRIM5Q9C035 493 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 TSPYL4Q9UJ04 414 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 C3P01024 1663 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 FAM208AQ9UK61 1670 aaKnown RBP12.94□□□□□ -0.34
ZNF558-201ENST00000301475 FLIIQ13045 1269 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 CWC27Q6UX04 472 aaKnown RBP12.94□□□□□ -0.34
ZNF558-201ENST00000301475 CDC37L1Q7L3B6 337 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 DACT1Q9NYF0 836 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.94□□□□□ -0.34
ZNF558-201ENST00000301475 PAXBP1Q9Y5B6 917 aa12.94□□□□□ -0.34
ZNF558-201ENST00000301475 V9GYY5 206 aaPredicted RBP12.94□□□□□ -0.34
ZNF558-201ENST00000301475 RIMS1Q86UR5 1692 aaKnown RBP12.93□□□□□ -0.34
ZNF558-201ENST00000301475 ARHGEF10O15013 1369 aa12.93□□□□□ -0.34
ZNF558-201ENST00000301475 USP27XA6NNY8 438 aa12.93□□□□□ -0.34
ZNF558-201ENST00000301475 NECAB1Q8N987 351 aa12.93□□□□□ -0.34
ZNF558-201ENST00000301475 AGLP35573 1532 aa12.93□□□□□ -0.34
ZNF558-201ENST00000301475 CRYBG1Q9Y4K1 1723 aa12.93□□□□□ -0.34
ZNF558-201ENST00000301475 ME3Q16798 604 aa12.93□□□□□ -0.34
ZNF558-201ENST00000301475 TPD52L1Q16890 204 aaPredicted RBP12.93□□□□□ -0.34
ZNF558-201ENST00000301475 DDX54Q8TDD1 881 aaKnown RBP12.93□□□□□ -0.34
ZNF558-201ENST00000301475 ZNF592Q92610 1267 aa12.93□□□□□ -0.34
ZNF558-201ENST00000301475 ERBB3P21860 1342 aa12.93□□□□□ -0.34
ZNF558-201ENST00000301475 COL9A3Q14050 684 aaPredicted RBP12.92□□□□□ -0.34
ZNF558-201ENST00000301475 KRT222Q8N1A0 295 aa12.92□□□□□ -0.34
ZNF558-201ENST00000301475 TDRD7Q8NHU6 1098 aaKnown RBP12.92□□□□□ -0.34
ZNF558-201ENST00000301475 TNMDQ9H2S6 317 aa12.92□□□□□ -0.34
ZNF558-201ENST00000301475 ZNF215Q9UL58 517 aaPredicted RBP12.92□□□□□ -0.34
ZNF558-201ENST00000301475 RGPD1P0DJD0 1748 aa12.92□□□□□ -0.34
ZNF558-201ENST00000301475 ARID5BQ14865 1188 aa12.92□□□□□ -0.34
ZNF558-201ENST00000301475 CEP135Q66GS9 1140 aa12.92□□□□□ -0.34
ZNF558-201ENST00000301475 JAKMIP1Q96N16 626 aaKnown RBP12.92□□□□□ -0.34
ZNF558-201ENST00000301475 ST7Q9NRC1 585 aa12.92□□□□□ -0.34
ZNF558-201ENST00000301475 TTC21AQ8NDW8 1320 aa12.92□□□□□ -0.34
ZNF558-201ENST00000301475 N4BP2Q86UW6 1770 aaPredicted RBP12.92□□□□□ -0.34
ZNF558-201ENST00000301475 KRT85P78386 507 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 PTH1RQ03431 593 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.91□□□□□ -0.34
ZNF558-201ENST00000301475 NECTIN2Q92692 538 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 CLIP2Q9UDT6 1046 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 ELP1O95163 1332 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 VGLL3A8MV65 326 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 RBM43Q6ZSC3 357 aaKnown RBP12.91□□□□□ -0.34
ZNF558-201ENST00000301475 ZNF397Q8NF99 534 aaPredicted RBP12.91□□□□□ -0.34
ZNF558-201ENST00000301475 USP44Q9H0E7 712 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 DNAJC25Q9H1X3 360 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 PDRG1Q9NUG6 133 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 PEAK1Q9H792 1746 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 SETD1AO15047 1707 aaKnown RBP12.91□□□□□ -0.34
ZNF558-201ENST00000301475 WASLO00401 505 aaPredicted RBP12.91□□□□□ -0.34
ZNF558-201ENST00000301475 IRX5P78411 483 aaPredicted RBP12.91□□□□□ -0.34
ZNF558-201ENST00000301475 VPS53Q5VIR6 699 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 FBXO38Q6PIJ6 1188 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 TXNDC2Q86VQ3 553 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 SSH3Q8TE77 659 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 FAM53CQ9NYF3 392 aa12.91□□□□□ -0.34
ZNF558-201ENST00000301475 RBM6P78332 1123 aaKnown RBP12.9□□□□□ -0.34
ZNF558-201ENST00000301475 STK31Q9BXU1 1019 aa12.9□□□□□ -0.34
ZNF558-201ENST00000301475 A2ML1A8K2U0 1454 aa12.9□□□□□ -0.34
ZNF558-201ENST00000301475 KCNJ4P48050 445 aa12.9□□□□□ -0.34
ZNF558-201ENST00000301475 ZNF165P49910 485 aa12.9□□□□□ -0.34
ZNF558-201ENST00000301475 AKAP12Q02952 1782 aa12.9□□□□□ -0.34
ZNF558-201ENST00000301475 HSP90AB2PQ58FF8 381 aa12.9□□□□□ -0.34
ZNF558-201ENST00000301475 PRPF40BQ6NWY9 871 aaKnown RBP12.9□□□□□ -0.34
ZNF558-201ENST00000301475 CNTROBQ8N137 903 aa12.9□□□□□ -0.34
ZNF558-201ENST00000301475 RHPN1Q8TCX5 695 aa12.9□□□□□ -0.34
ZNF558-201ENST00000301475 TNRQ92752 1358 aa12.9□□□□□ -0.34
ZNF558-201ENST00000301475 SLC26A8Q96RN1 970 aa12.9□□□□□ -0.34
ZNF558-201ENST00000301475 SH2B1Q9NRF2 756 aaPredicted RBP12.9□□□□□ -0.34
ZNF558-201ENST00000301475 SURF6O75683 361 aaKnown RBP12.89□□□□□ -0.35
ZNF558-201ENST00000301475 ELF2Q15723 593 aa12.89□□□□□ -0.35
ZNF558-201ENST00000301475 LARP1BQ659C4 914 aaKnown RBP12.89□□□□□ -0.35
ZNF558-201ENST00000301475 CLSTN2Q9H4D0 955 aa12.89□□□□□ -0.35
ZNF558-201ENST00000301475 ZSWIM6Q9HCJ5 1215 aa12.89□□□□□ -0.35
ZNF558-201ENST00000301475 TPCN1Q9ULQ1 816 aa12.89□□□□□ -0.35
ZNF558-201ENST00000301475 NUTM2FA1L443 756 aa12.89□□□□□ -0.35
ZNF558-201ENST00000301475 NYAP1Q6ZVC0 841 aa12.89□□□□□ -0.35
ZNF558-201ENST00000301475 PPP1R42Q7Z4L9 355 aa12.89□□□□□ -0.35
ZNF558-201ENST00000301475 CHD2O14647 1828 aaKnown RBP12.89□□□□□ -0.35
ZNF558-201ENST00000301475 CCDC171Q6TFL3 1326 aa12.89□□□□□ -0.35
ZNF558-201ENST00000301475 NR1I2O75469 434 aa12.88□□□□□ -0.35
ZNF558-201ENST00000301475 UBTFL1P0CB47 393 aaPredicted RBP12.88□□□□□ -0.35
ZNF558-201ENST00000301475 MTHFSDQ2M296 383 aaKnown RBP12.88□□□□□ -0.35
ZNF558-201ENST00000301475 NUDT16Q96DE0 195 aaKnown RBP12.88□□□□□ -0.35
ZNF558-201ENST00000301475 ZSCAN31Q96LW9 406 aaPredicted RBP12.88□□□□□ -0.35
ZNF558-201ENST00000301475 TFIP11Q9UBB9 837 aaKnown RBP12.88□□□□□ -0.35
ZNF558-201ENST00000301475 ERICH4A6NGS2 130 aa12.88□□□□□ -0.35
ZNF558-201ENST00000301475 LRRC8AQ8IWT6 810 aa12.88□□□□□ -0.35
ZNF558-201ENST00000301475 DDX19AQ9NUU7 478 aaKnown RBP12.88□□□□□ -0.35
ZNF558-201ENST00000301475 CYP46A1Q9Y6A2 500 aa12.88□□□□□ -0.35
ZNF558-201ENST00000301475 ITSN1Q15811 1721 aa12.88□□□□□ -0.35
ZNF558-201ENST00000301475 MAP3K19Q56UN5 1328 aa12.88□□□□□ -0.35
ZNF558-201ENST00000301475 ZNF446Q9NWS9 450 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms