RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 RASAL2Q9UJF2 1139 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 GNAI1P63096 354 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 CACNA2D4Q7Z3S7 1137 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 IFT74Q96LB3 600 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 EFCAB5A4FU69 1503 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 DRC1Q96MC2 740 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 TRIM4Q9C037 500 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 CAMK4Q16566 473 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 NOL7Q9UMY1 257 aaKnown RBP12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 EHBP1Q8NDI1 1231 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 CCDC94Q9BW85 323 aaPredicted RBP12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 CAPN2P17655 700 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 CCDC96Q2M329 555 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 SAMD15Q9P1V8 674 aa12.83□□□□□ -0.36
HDGFL3-201ENST00000299633 CEP131Q9UPN4 1083 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 CCDC183Q5T5S1 534 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 CCDC129Q6ZRS4 1044 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 TRMT1Q9NXH9 659 aaKnown RBP12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 SMG6Q86US8 1419 aaKnown RBP12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 MAP2K2P36507 400 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 SNW1Q13573 536 aaKnown RBP12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 CC2D2AQ9P2K1 1620 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 PHLDB2Q86SQ0 1253 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 DNA2P51530 1060 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 PRC1O43663 620 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 MCM5P33992 734 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 ZBTB12Q9Y330 459 aaPredicted RBP12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 PTPRGP23470 1445 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 UNC13AQ9UPW8 1703 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 MTUS1Q9ULD2 1270 aa12.82□□□□□ -0.36
HDGFL3-201ENST00000299633 LCA5Q86VQ0 697 aa12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 CDKL5O76039 1030 aa12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 GSDMBQ8TAX9 411 aa12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 ZNF830Q96NB3 372 aaPredicted RBP12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 ARL1P40616 181 aaPredicted RBP12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 UBTFL1P0CB47 393 aaPredicted RBP12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 ATICP31939 592 aa12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 PFDN1O60925 122 aa12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 ACTN2P35609 894 aa12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 VPS41P49754 854 aa12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 BRD2P25440 801 aaKnown RBP12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 RBM27Q9P2N5 1060 aaKnown RBP12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 DDX58O95786 925 aaKnown RBP12.81□□□□□ -0.36
HDGFL3-201ENST00000299633 CCDC144CPQ8IYA2 1237 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 TSG101Q99816 390 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 TRIM7Q9C029 511 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 NOB1Q9ULX3 412 aaKnown RBP12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 CLIP2Q9UDT6 1046 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 MYH3P11055 1940 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 ERCC6LQ2NKX8 1250 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 CNTRLQ7Z7A1 2325 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 SH3BP5O60239 455 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 YEATS4O95619 227 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 CEP85LQ5SZL2 805 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 GBP5Q96PP8 586 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 FSD1Q9BTV5 496 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 LRRC23Q53EV4 343 aaPredicted RBP12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 LRRC45Q96CN5 670 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 PPP1R12CQ9BZL4 782 aa12.8□□□□□ -0.36
HDGFL3-201ENST00000299633 POTEDQ86YR6 584 aa12.79□□□□□ -0.36
HDGFL3-201ENST00000299633 GCKP35557 465 aa12.79□□□□□ -0.36
HDGFL3-201ENST00000299633 SYTL4Q96C24 671 aaPredicted RBP12.79□□□□□ -0.36
HDGFL3-201ENST00000299633 CPLX4Q7Z7G2 160 aa12.79□□□□□ -0.36
HDGFL3-201ENST00000299633 ERCC5P28715 1186 aaPredicted RBP12.79□□□□□ -0.36
HDGFL3-201ENST00000299633 SPTY2D1Q68D10 685 aaPredicted RBP12.79□□□□□ -0.36
HDGFL3-201ENST00000299633 PRPF4BQ13523 1007 aaKnown RBP12.79□□□□□ -0.36
HDGFL3-201ENST00000299633 TSR2Q969E8 191 aaKnown RBP12.79□□□□□ -0.36
HDGFL3-201ENST00000299633 MYCBPQ99417 103 aaPredicted RBP12.79□□□□□ -0.36
HDGFL3-201ENST00000299633 KRBA2Q6ZNG9 492 aa12.79□□□□□ -0.36
HDGFL3-201ENST00000299633 DACT3Q96B18 629 aaPredicted RBP12.79□□□□□ -0.36
HDGFL3-201ENST00000299633 CLCN1P35523 988 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 NUTM2GQ5VZR2 741 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 RSPH3Q86UC2 560 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 CCDC38Q502W7 563 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 HEATR1Q9H583 2144 aaKnown RBP12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 KNL1Q8NG31 2342 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 BCAR3O75815 825 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 PPP2R1AP30153 589 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 EVA1CP58658 441 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 CCDC69A6NI79 296 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 SSFA2P28290 1259 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 CCDC57Q2TAC2 916 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 MTHFSP49914 203 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 NEUROD6Q96NK8 337 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 TPX2Q9ULW0 747 aaKnown RBP12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 TBC1D2BQ9UPU7 963 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 SSBP05455 408 aaKnown RBP eCLIP12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 INPP1P49441 399 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 TNPO1Q92973 898 aaKnown RBP12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 GGNBP2Q9H3C7 697 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 USP25Q9UHP3 1055 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 XRCC6P12956 609 aaKnown RBP eCLIP12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 ALDH3A1P30838 453 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 FERMT2Q96AC1 680 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 C9orf84Q5VXU9 1444 aa12.78□□□□□ -0.36
HDGFL3-201ENST00000299633 STK3Q13188 491 aa12.77□□□□□ -0.36
HDGFL3-201ENST00000299633 CTAGE5O15320 804 aa12.77□□□□□ -0.36
HDGFL3-201ENST00000299633 CFAP157Q5JU67 520 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms