RNA–Protein interactions for RNA: ENST00000271850.11

TPM3-201, Transcript of tropomyosin 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene TPM3, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-201ENST00000271850 IFNL1Q8IU54 200 aa12.18□□□□□ -0.46
TPM3-201ENST00000271850 CARMIL3Q8ND23 1372 aa12.18□□□□□ -0.46
TPM3-201ENST00000271850 FCHSD2O94868 740 aa12.17□□□□□ -0.46
TPM3-201ENST00000271850 PRELPP51888 382 aa12.17□□□□□ -0.46
TPM3-201ENST00000271850 NMRK2Q9NPI5 230 aa12.17□□□□□ -0.46
TPM3-201ENST00000271850 COL15A1P39059 1388 aa12.17□□□□□ -0.46
TPM3-201ENST00000271850 NPC1L1Q9UHC9 1359 aa12.17□□□□□ -0.46
TPM3-201ENST00000271850 DIAPH1O60610 1272 aaKnown RBP12.16□□□□□ -0.46
TPM3-201ENST00000271850 NFIXQ14938 502 aa12.16□□□□□ -0.46
TPM3-201ENST00000271850 ARHGAP27Q6ZUM4 889 aa12.16□□□□□ -0.46
TPM3-201ENST00000271850 IL17REQ8NFR9 667 aa12.16□□□□□ -0.46
TPM3-201ENST00000271850 SBF1O95248 1867 aa12.15□□□□□ -0.46
TPM3-201ENST00000271850 C9orf131Q5VYM1 1079 aa12.15□□□□□ -0.46
TPM3-201ENST00000271850 NARFQ9UHQ1 456 aa12.15□□□□□ -0.46
TPM3-201ENST00000271850 DLEC1Q9Y238 1755 aa12.15□□□□□ -0.46
TPM3-201ENST00000271850 ST18O60284 1047 aa12.14□□□□□ -0.47
TPM3-201ENST00000271850 PIM2Q9P1W9 311 aa12.14□□□□□ -0.47
TPM3-201ENST00000271850 SCN7AQ01118 1682 aa12.13□□□□□ -0.47
TPM3-201ENST00000271850 ANKRD31Q8N7Z5 1873 aa12.13□□□□□ -0.47
TPM3-201ENST00000271850 KCNQ3O43525 872 aa12.13□□□□□ -0.47
TPM3-201ENST00000271850 EIF5P55010 431 aaKnown RBP12.13□□□□□ -0.47
TPM3-201ENST00000271850 CNGB1Q14028 1251 aaPredicted RBP12.13□□□□□ -0.47
TPM3-201ENST00000271850 VSIG10Q8N0Z9 540 aa12.13□□□□□ -0.47
TPM3-201ENST00000271850 ZNF496Q96IT1 587 aaPredicted RBP12.13□□□□□ -0.47
TPM3-201ENST00000271850 PHACTR3Q96KR7 559 aa12.13□□□□□ -0.47
TPM3-201ENST00000271850 CEMIPQ8WUJ3 1361 aa12.13□□□□□ -0.47
TPM3-201ENST00000271850 COL11A2P13942 1736 aaPredicted RBP12.12□□□□□ -0.47
TPM3-201ENST00000271850 PCNTO95613 3336 aa12.12□□□□□ -0.47
TPM3-201ENST00000271850 RASSF7Q02833 373 aa12.12□□□□□ -0.47
TPM3-201ENST00000271850 DALRD3Q5D0E6 543 aaKnown RBP12.12□□□□□ -0.47
TPM3-201ENST00000271850 HEG1Q9ULI3 1381 aa12.12□□□□□ -0.47
TPM3-201ENST00000271850 ZPR1O75312 459 aa12.11□□□□□ -0.47
TPM3-201ENST00000271850 CANXP27824 592 aaKnown RBP12.11□□□□□ -0.47
TPM3-201ENST00000271850 DNAJC5GQ8N7S2 189 aa12.11□□□□□ -0.47
TPM3-201ENST00000271850 RSPH6AQ9H0K4 717 aa12.11□□□□□ -0.47
TPM3-201ENST00000271850 U2SURPO15042 1029 aaKnown RBP12.1□□□□□ -0.47
TPM3-201ENST00000271850 TOMM70O94826 608 aa12.1□□□□□ -0.47
TPM3-201ENST00000271850 SERPINB2P05120 415 aa12.1□□□□□ -0.47
TPM3-201ENST00000271850 TBC1D9BQ66K14 1250 aa12.1□□□□□ -0.47
TPM3-201ENST00000271850 ZNF790Q6PG37 636 aa12.1□□□□□ -0.47
TPM3-201ENST00000271850 PRAMEF22A3QJZ6 481 aa12.09□□□□□ -0.47
TPM3-201ENST00000271850 HTRA3P83110 453 aa12.09□□□□□ -0.47
TPM3-201ENST00000271850 RNF181Q9P0P0 153 aa12.09□□□□□ -0.47
TPM3-201ENST00000271850 BCORQ6W2J9 1755 aa12.09□□□□□ -0.47
TPM3-201ENST00000271850 WDR90Q96KV7 1748 aa12.08□□□□□ -0.47
TPM3-201ENST00000271850 GNAT3A8MTJ3 354 aa12.08□□□□□ -0.48
TPM3-201ENST00000271850 NFKBIEO00221 500 aa12.08□□□□□ -0.48
TPM3-201ENST00000271850 SNPHO15079 494 aa12.08□□□□□ -0.48
TPM3-201ENST00000271850 A1BGP04217 495 aa12.08□□□□□ -0.48
TPM3-201ENST00000271850 PRKAR2BP31323 418 aa12.08□□□□□ -0.48
TPM3-201ENST00000271850 IRX5P78411 483 aaPredicted RBP12.08□□□□□ -0.48
TPM3-201ENST00000271850 CCDC24Q8N4L8 307 aa12.08□□□□□ -0.48
TPM3-201ENST00000271850 GAS2L2Q8NHY3 880 aa12.08□□□□□ -0.48
TPM3-201ENST00000271850 TMEM121BQ9BXQ6 578 aaPredicted RBP12.08□□□□□ -0.48
TPM3-201ENST00000271850 TNRC6CQ9HCJ0 1690 aaKnown RBP12.07□□□□□ -0.48
TPM3-201ENST00000271850 CAMTA2O94983 1202 aa12.07□□□□□ -0.48
TPM3-201ENST00000271850 PIP4K2AP48426 406 aaPredicted RBP12.07□□□□□ -0.48
TPM3-201ENST00000271850 IFFO2Q5TF58 517 aa12.07□□□□□ -0.48
TPM3-201ENST00000271850 BICDL1Q6ZP65 573 aa12.07□□□□□ -0.48
TPM3-201ENST00000271850 TIAM2Q8IVF5 1701 aa12.07□□□□□ -0.48
TPM3-201ENST00000271850 OCEL1Q9H607 264 aa12.07□□□□□ -0.48
TPM3-201ENST00000271850 TBC1D2BQ9UPU7 963 aa12.07□□□□□ -0.48
TPM3-201ENST00000271850 PRR5LQ6MZQ0 368 aa12.06□□□□□ -0.48
TPM3-201ENST00000271850 C2CD5Q86YS7 1000 aa12.06□□□□□ -0.48
TPM3-201ENST00000271850 TTC5Q8N0Z6 440 aa12.06□□□□□ -0.48
TPM3-201ENST00000271850 RBM46Q8TBY0 533 aaKnown RBP12.06□□□□□ -0.48
TPM3-201ENST00000271850 USP16Q9Y5T5 823 aa12.06□□□□□ -0.48
TPM3-201ENST00000271850 POTECB2RU33 542 aa12.05□□□□□ -0.48
TPM3-201ENST00000271850 STARD3NLO95772 234 aa12.05□□□□□ -0.48
TPM3-201ENST00000271850 PPP2R1AP30153 589 aa12.05□□□□□ -0.48
TPM3-201ENST00000271850 IL6STP40189 918 aaPredicted RBP12.05□□□□□ -0.48
TPM3-201ENST00000271850 APLP1P51693 650 aa12.05□□□□□ -0.48
TPM3-201ENST00000271850 TEFQ10587 303 aa12.05□□□□□ -0.48
TPM3-201ENST00000271850 RRAGCQ9HB90 399 aa12.05□□□□□ -0.48
TPM3-201ENST00000271850 FER1L6Q2WGJ9 1857 aa12.04□□□□□ -0.48
TPM3-201ENST00000271850 CCDC88AQ3V6T2 1871 aa12.04□□□□□ -0.48
TPM3-201ENST00000271850 DCTN1Q14203 1278 aa12.04□□□□□ -0.48
TPM3-201ENST00000271850 MCM10Q7L590 875 aa12.04□□□□□ -0.48
TPM3-201ENST00000271850 TTLL6Q8N841 843 aa12.04□□□□□ -0.48
TPM3-201ENST00000271850 FMNL2Q96PY5 1086 aa12.04□□□□□ -0.48
TPM3-201ENST00000271850 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.04□□□□□ -0.48
TPM3-201ENST00000271850 SLX4Q8IY92 1834 aa12.03□□□□□ -0.48
TPM3-201ENST00000271850 BTBD11A6QL63 1104 aa12.03□□□□□ -0.48
TPM3-201ENST00000271850 NBPF26B4DH59 902 aa12.03□□□□□ -0.48
TPM3-201ENST00000271850 DCAF8Q5TAQ9 597 aa12.03□□□□□ -0.48
TPM3-201ENST00000271850 NBPF10Q6P3W6 841 aaKnown RBP12.03□□□□□ -0.48
TPM3-201ENST00000271850 NBPF15Q8N660 670 aa12.03□□□□□ -0.48
TPM3-201ENST00000271850 A0A087WZG4 1122 aa12.02□□□□□ -0.49
TPM3-201ENST00000271850 LMNB1P20700 586 aa12.02□□□□□ -0.49
TPM3-201ENST00000271850 BRIP1Q9BX63 1249 aa12.02□□□□□ -0.49
TPM3-201ENST00000271850 ZNF330Q9Y3S2 320 aaPredicted RBP12.02□□□□□ -0.49
TPM3-201ENST00000271850 KDM2BQ8NHM5 1336 aa12.02□□□□□ -0.49
TPM3-201ENST00000271850 ZC3H4Q9UPT8 1303 aaKnown RBP12.02□□□□□ -0.49
TPM3-201ENST00000271850 ARFGEF2Q9Y6D5 1785 aa12.02□□□□□ -0.49
TPM3-201ENST00000271850 GLTPD2A6NH11 291 aa12.01□□□□□ -0.49
TPM3-201ENST00000271850 H0YIN7 160 aa12.01□□□□□ -0.49
TPM3-201ENST00000271850 C21orf2O43822 256 aa12.01□□□□□ -0.49
TPM3-201ENST00000271850 FSTL1Q12841 308 aa12.01□□□□□ -0.49
TPM3-201ENST00000271850 TEX13AQ9BXU3 409 aaPredicted RBP12.01□□□□□ -0.49
TPM3-201ENST00000271850 CACNA1SQ13698 1873 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms