RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CTIFO43310 598 aaKnown RBP17.1■□□□□ 0.33
SDC1-201ENST00000254351 ANAPC15P60006 121 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 HSP90AB2PQ58FF8 381 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 ZSCAN25Q6NSZ9 544 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 CDC37L1Q7L3B6 337 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 FAM200AQ8TCP9 573 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 DDX11Q96FC9 970 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 ZNF215Q9UL58 517 aaPredicted RBP17.1■□□□□ 0.33
SDC1-201ENST00000254351 OS9Q13438 667 aaPredicted RBP17.09■□□□□ 0.33
SDC1-201ENST00000254351 BICD2Q8TD16 824 aa17.09■□□□□ 0.33
SDC1-201ENST00000254351 CHMP4AQ9BY43 222 aa17.09■□□□□ 0.33
SDC1-201ENST00000254351 TMEM2Q9UHN6 1383 aa17.09■□□□□ 0.33
SDC1-201ENST00000254351 CD163L1Q9NR16 1453 aa17.09■□□□□ 0.33
SDC1-201ENST00000254351 STK31Q9BXU1 1019 aa17.09■□□□□ 0.33
SDC1-201ENST00000254351 ATP6V1DQ9Y5K8 247 aa17.09■□□□□ 0.33
SDC1-201ENST00000254351 ELF2Q15723 593 aa17.08■□□□□ 0.33
SDC1-201ENST00000254351 CHL1O00533 1208 aa17.08■□□□□ 0.32
SDC1-201ENST00000254351 PDRG1Q9NUG6 133 aa17.08■□□□□ 0.32
SDC1-201ENST00000254351 HDGFP51858 240 aaKnown RBP17.07■□□□□ 0.32
SDC1-201ENST00000254351 PTH1RQ03431 593 aa17.07■□□□□ 0.32
SDC1-201ENST00000254351 CEP135Q66GS9 1140 aa17.07■□□□□ 0.32
SDC1-201ENST00000254351 NAP1L2Q9ULW6 460 aaPredicted RBP17.07■□□□□ 0.32
SDC1-201ENST00000254351 SLFN14P0C7P3 912 aa17.07■□□□□ 0.32
SDC1-201ENST00000254351 KMT5BQ4FZB7 885 aa17.07■□□□□ 0.32
SDC1-201ENST00000254351 GORABQ5T7V8 394 aa17.07■□□□□ 0.32
SDC1-201ENST00000254351 FEZ1Q99689 392 aa17.07■□□□□ 0.32
SDC1-201ENST00000254351 EIF4A2Q14240 407 aaKnown RBP17.07■□□□□ 0.32
SDC1-201ENST00000254351 GTF3C6Q969F1 213 aa17.07■□□□□ 0.32
SDC1-201ENST00000254351 USP16Q9Y5T5 823 aa17.07■□□□□ 0.32
SDC1-201ENST00000254351 ZNF165P49910 485 aa17.06■□□□□ 0.32
SDC1-201ENST00000254351 ME3Q16798 604 aa17.06■□□□□ 0.32
SDC1-201ENST00000254351 PTPRCP08575 1304 aa17.06■□□□□ 0.32
SDC1-201ENST00000254351 SMTNL1A8MU46 457 aa17.06■□□□□ 0.32
SDC1-201ENST00000254351 KIF18AQ8NI77 898 aa17.06■□□□□ 0.32
SDC1-201ENST00000254351 CCT4P50991 539 aaKnown RBP17.05■□□□□ 0.32
SDC1-201ENST00000254351 TMEM87AQ8NBN3 555 aa17.05■□□□□ 0.32
SDC1-201ENST00000254351 PUS7Q96PZ0 661 aaKnown RBP17.05■□□□□ 0.32
SDC1-201ENST00000254351 EIF2S2P20042 333 aaKnown RBP17.05■□□□□ 0.32
SDC1-201ENST00000254351 FLIIQ13045 1269 aa17.05■□□□□ 0.32
SDC1-201ENST00000254351 TXNDC2Q86VQ3 553 aa17.05■□□□□ 0.32
SDC1-201ENST00000254351 DDX41Q9UJV9 622 aaKnown RBP17.05■□□□□ 0.32
SDC1-201ENST00000254351 NR1I2O75469 434 aa17.05■□□□□ 0.32
SDC1-201ENST00000254351 HYPKQ9NX55 129 aa17.05■□□□□ 0.32
SDC1-201ENST00000254351 PTPRMP28827 1452 aa17.04■□□□□ 0.32
SDC1-201ENST00000254351 ALKQ9UM73 1620 aa17.04■□□□□ 0.32
SDC1-201ENST00000254351 CEP170BQ9Y4F5 1589 aaPredicted RBP17.04■□□□□ 0.32
SDC1-201ENST00000254351 SRGAP3O43295 1099 aa17.04■□□□□ 0.32
SDC1-201ENST00000254351 UBTFL1P0CB47 393 aaPredicted RBP17.04■□□□□ 0.32
SDC1-201ENST00000254351 IRX5P78411 483 aaPredicted RBP17.04■□□□□ 0.32
SDC1-201ENST00000254351 PPP1R42Q7Z4L9 355 aa17.04■□□□□ 0.32
SDC1-201ENST00000254351 SPATA32Q96LK8 384 aa17.04■□□□□ 0.32
SDC1-201ENST00000254351 TTC14Q96N46 770 aa17.04■□□□□ 0.32
SDC1-201ENST00000254351 SLIT1O75093 1534 aa17.04■□□□□ 0.32
SDC1-201ENST00000254351 SGSM2O43147 1006 aa17.04■□□□□ 0.32
SDC1-201ENST00000254351 ZNF75DP51815 510 aa17.04■□□□□ 0.32
SDC1-201ENST00000254351 KRT85P78386 507 aa17.04■□□□□ 0.32
SDC1-201ENST00000254351 ZFP91Q96JP5 570 aaPredicted RBP17.04■□□□□ 0.32
SDC1-201ENST00000254351 ATP8B2P98198 1209 aa17.03■□□□□ 0.32
SDC1-201ENST00000254351 FBXO38Q6PIJ6 1188 aa17.03■□□□□ 0.32
SDC1-201ENST00000254351 USP32Q8NFA0 1604 aa17.03■□□□□ 0.32
SDC1-201ENST00000254351 ARHGAP23Q9P227 1491 aa17.03■□□□□ 0.32
SDC1-201ENST00000254351 ANXA1P04083 346 aa17.03■□□□□ 0.32
SDC1-201ENST00000254351 RAD50Q92878 1312 aa17.03■□□□□ 0.32
SDC1-201ENST00000254351 SALL3Q9BXA9 1300 aa17.03■□□□□ 0.32
SDC1-201ENST00000254351 TERF2Q15554 542 aa17.03■□□□□ 0.32
SDC1-201ENST00000254351 THEMISQ8N1K5 641 aaPredicted RBP17.03■□□□□ 0.32
SDC1-201ENST00000254351 LSG1Q9H089 658 aaKnown RBP17.03■□□□□ 0.32
SDC1-201ENST00000254351 TPM3P06753 285 aa17.02■□□□□ 0.32
SDC1-201ENST00000254351 PHAXQ9H814 394 aaKnown RBP17.02■□□□□ 0.32
SDC1-201ENST00000254351 TPCN1Q9ULQ1 816 aa17.02■□□□□ 0.32
SDC1-201ENST00000254351 PTPN14Q15678 1187 aa17.02■□□□□ 0.31
SDC1-201ENST00000254351 CERS3Q8IU89 383 aa17.02■□□□□ 0.31
SDC1-201ENST00000254351 KRT222Q8N1A0 295 aa17.02■□□□□ 0.31
SDC1-201ENST00000254351 POLR3GO15318 223 aaPredicted RBP17.01■□□□□ 0.31
SDC1-201ENST00000254351 SKILP12757 684 aa17.01■□□□□ 0.31
SDC1-201ENST00000254351 ST3GAL1Q11201 340 aa17.01■□□□□ 0.31
SDC1-201ENST00000254351 CYP46A1Q9Y6A2 500 aa17.01■□□□□ 0.31
SDC1-201ENST00000254351 NRXN3Q9Y4C0 1643 aa17.01■□□□□ 0.31
SDC1-201ENST00000254351 SETD1BQ9UPS6 1966 aaKnown RBP17.01■□□□□ 0.31
SDC1-201ENST00000254351 ZNF142P52746 1687 aaPredicted RBP17.01■□□□□ 0.31
SDC1-201ENST00000254351 GOLGA6L19H0YKK7 550 aa17.01■□□□□ 0.31
SDC1-201ENST00000254351 HAP1P54257 671 aaPredicted RBP17.01■□□□□ 0.31
SDC1-201ENST00000254351 MTHFSDQ2M296 383 aaKnown RBP17.01■□□□□ 0.31
SDC1-201ENST00000254351 LARP1Q6PKG0 1096 aaKnown RBP17.01■□□□□ 0.31
SDC1-201ENST00000254351 LRRN4CLQ8ND94 238 aa17.01■□□□□ 0.31
SDC1-201ENST00000254351 RHPN1Q8TCX5 695 aa17.01■□□□□ 0.31
SDC1-201ENST00000254351 FMNL2Q96PY5 1086 aa17.01■□□□□ 0.31
SDC1-201ENST00000254351 RAB11FIP3O75154 756 aa17■□□□□ 0.31
SDC1-201ENST00000254351 GNAI3P08754 354 aa17■□□□□ 0.31
SDC1-201ENST00000254351 CNTROBQ8N137 903 aa17■□□□□ 0.31
SDC1-201ENST00000254351 LTV1Q96GA3 475 aaPredicted RBP17■□□□□ 0.31
SDC1-201ENST00000254351 FTOQ9C0B1 505 aaKnown RBP eCLIP17■□□□□ 0.31
SDC1-201ENST00000254351 TAF6LQ9Y6J9 622 aa17■□□□□ 0.31
SDC1-201ENST00000254351 USP44Q9H0E7 712 aa17■□□□□ 0.31
SDC1-201ENST00000254351 SETD1AO15047 1707 aaKnown RBP17■□□□□ 0.31
SDC1-201ENST00000254351 SOS1Q07889 1333 aaPredicted RBP17■□□□□ 0.31
SDC1-201ENST00000254351 KIF24Q5T7B8 1368 aa16.99■□□□□ 0.31
SDC1-201ENST00000254351 ERCC6LQ2NKX8 1250 aa16.99■□□□□ 0.31
SDC1-201ENST00000254351 NBPF7P0C2Y1 421 aaPredicted RBP16.99■□□□□ 0.31
SDC1-201ENST00000254351 LTKP29376 864 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms