RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 DNAAF4Q8WXU2 420 aa28.28■■■□□ 2.12
CDX1-201ENST00000231656 ITPK1Q13572 414 aa28.26■■■□□ 2.11
CDX1-201ENST00000231656 CHD1LQ86WJ1 897 aa28.26■■■□□ 2.11
CDX1-201ENST00000231656 MEIS3Q99687 375 aa28.26■■■□□ 2.11
CDX1-201ENST00000231656 MAP3K2Q9Y2U5 619 aa28.26■■■□□ 2.11
CDX1-201ENST00000231656 ANKRD44Q8N8A2 993 aa28.25■■■□□ 2.11
CDX1-201ENST00000231656 NOP58Q9Y2X3 529 aaKnown RBP28.24■■■□□ 2.11
CDX1-201ENST00000231656 LY75O60449 1722 aa28.23■■■□□ 2.11
CDX1-201ENST00000231656 COL5A3P25940 1745 aaPredicted RBP28.23■■■□□ 2.11
CDX1-201ENST00000231656 ANKRD13DQ6ZTN6 518 aa28.23■■■□□ 2.11
CDX1-201ENST00000231656 RIC3Q7Z5B4 369 aa28.22■■■□□ 2.11
CDX1-201ENST00000231656 RPAP2Q8IXW5 612 aaPredicted RBP28.22■■■□□ 2.11
CDX1-201ENST00000231656 LNPKQ9C0E8 428 aa28.22■■■□□ 2.11
CDX1-201ENST00000231656 MYH14Q7Z406 1995 aaKnown RBP28.22■■■□□ 2.11
CDX1-201ENST00000231656 TRIM37O94972 964 aa28.22■■■□□ 2.11
CDX1-201ENST00000231656 BEND3Q5T5X7 828 aa28.22■■■□□ 2.11
CDX1-201ENST00000231656 CEP85Q6P2H3 762 aa28.22■■■□□ 2.11
CDX1-201ENST00000231656 ZBTB1Q9Y2K1 713 aa28.22■■■□□ 2.11
CDX1-201ENST00000231656 ARFGEF2Q9Y6D5 1785 aa28.21■■■□□ 2.11
CDX1-201ENST00000231656 RREB1Q92766 1687 aa28.2■■■□□ 2.11
CDX1-201ENST00000231656 CRKLP46109 303 aaKnown RBP28.2■■■□□ 2.11
CDX1-201ENST00000231656 TTLL7Q6ZT98 887 aa28.2■■■□□ 2.11
CDX1-201ENST00000231656 ILDR1Q86SU0 546 aaPredicted RBP28.2■■■□□ 2.11
CDX1-201ENST00000231656 SRCIN1Q9C0H9 1055 aa28.2■■■□□ 2.11
CDX1-201ENST00000231656 ANKRD45Q5TZF3 282 aa28.19■■■□□ 2.1
CDX1-201ENST00000231656 PLBD2Q8NHP8 589 aa28.19■■■□□ 2.1
CDX1-201ENST00000231656 DCTPP1Q9H773 170 aa28.19■■■□□ 2.1
CDX1-201ENST00000231656 SEC24BO95487 1268 aa28.19■■■□□ 2.1
CDX1-201ENST00000231656 KCNQ4P56696 695 aa28.19■■■□□ 2.1
CDX1-201ENST00000231656 INTS5Q6P9B9 1019 aaKnown RBP28.19■■■□□ 2.1
CDX1-201ENST00000231656 CCDC87Q9NVE4 849 aa28.19■■■□□ 2.1
CDX1-201ENST00000231656 ZNF330Q9Y3S2 320 aaPredicted RBP28.19■■■□□ 2.1
CDX1-201ENST00000231656 NUP188Q5SRE5 1749 aa28.18■■■□□ 2.1
CDX1-201ENST00000231656 ZBTB47Q9UFB7 747 aaPredicted RBP28.17■■■□□ 2.1
CDX1-201ENST00000231656 IL6STP40189 918 aaPredicted RBP28.16■■■□□ 2.1
CDX1-201ENST00000231656 LINC00116Q8NCU8 138 aa28.16■■■□□ 2.1
CDX1-201ENST00000231656 ERICH6Q7L0X2 663 aa28.16■■■□□ 2.1
CDX1-201ENST00000231656 ANP32EQ9BTT0 268 aa28.16■■■□□ 2.1
CDX1-201ENST00000231656 METTL22Q9BUU2 404 aaPredicted RBP28.16■■■□□ 2.1
CDX1-201ENST00000231656 CCNL1Q9UK58 526 aaPredicted RBP28.16■■■□□ 2.1
CDX1-201ENST00000231656 LINS1Q8NG48 757 aa28.15■■■□□ 2.1
CDX1-201ENST00000231656 DDRGK1Q96HY6 314 aa28.15■■■□□ 2.1
CDX1-201ENST00000231656 TAF1LQ8IZX4 1826 aa28.15■■■□□ 2.1
CDX1-201ENST00000231656 USP44Q9H0E7 712 aa28.14■■■□□ 2.1
CDX1-201ENST00000231656 ALDH1L1O75891 902 aa28.14■■■□□ 2.09
CDX1-201ENST00000231656 NEXNQ0ZGT2 675 aa28.14■■■□□ 2.09
CDX1-201ENST00000231656 EIF5P55010 431 aaKnown RBP28.13■■■□□ 2.09
CDX1-201ENST00000231656 CWF19L2Q2TBE0 894 aaKnown RBP28.13■■■□□ 2.09
CDX1-201ENST00000231656 MYD88Q99836 296 aa28.13■■■□□ 2.09
CDX1-201ENST00000231656 ZBTB3Q9H5J0 574 aa28.13■■■□□ 2.09
CDX1-201ENST00000231656 IGKV5-2P06315 115 aa28.12■■■□□ 2.09
CDX1-201ENST00000231656 GNAI2P04899 355 aa28.11■■■□□ 2.09
CDX1-201ENST00000231656 GNAI3P08754 354 aa28.11■■■□□ 2.09
CDX1-201ENST00000231656 KIF6Q6ZMV9 814 aa28.11■■■□□ 2.09
CDX1-201ENST00000231656 CNTNAP4Q9C0A0 1308 aa28.1■■■□□ 2.09
CDX1-201ENST00000231656 AFDNP55196 1824 aaKnown RBP28.1■■■□□ 2.09
CDX1-201ENST00000231656 ARXQ96QS3 562 aa28.09■■■□□ 2.09
CDX1-201ENST00000231656 NEURL1BA8MQ27 555 aa28.09■■■□□ 2.09
CDX1-201ENST00000231656 MAP3K15Q6ZN16 1313 aa28.08■■■□□ 2.09
CDX1-201ENST00000231656 RC3H1Q5TC82 1133 aaKnown RBP28.08■■■□□ 2.09
CDX1-201ENST00000231656 LRRC4BQ9NT99 713 aa28.08■■■□□ 2.09
CDX1-201ENST00000231656 IBTKQ9P2D0 1353 aaPredicted RBP28.07■■■□□ 2.08
CDX1-201ENST00000231656 HMMRO75330 724 aa28.07■■■□□ 2.08
CDX1-201ENST00000231656 BMP2KLQ5H9B9 411 aa28.07■■■□□ 2.08
CDX1-201ENST00000231656 ATP5J2-PTCD1G3V325 749 aa28.06■■■□□ 2.08
CDX1-201ENST00000231656 NBPF7P0C2Y1 421 aaPredicted RBP28.06■■■□□ 2.08
CDX1-201ENST00000231656 UBTFL1P0CB47 393 aaPredicted RBP28.06■■■□□ 2.08
CDX1-201ENST00000231656 DZIP3Q86Y13 1208 aaKnown RBP28.06■■■□□ 2.08
CDX1-201ENST00000231656 TBC1D2BQ9UPU7 963 aa28.06■■■□□ 2.08
CDX1-201ENST00000231656 GCKRQ14397 625 aa28.05■■■□□ 2.08
CDX1-201ENST00000231656 SLC27A3Q5K4L6 730 aa28.05■■■□□ 2.08
CDX1-201ENST00000231656 C9orf78Q9NZ63 289 aaPredicted RBP28.05■■■□□ 2.08
CDX1-201ENST00000231656 C4BP0C0L5 1744 aa28.05■■■□□ 2.08
CDX1-201ENST00000231656 NUP98P52948 1817 aa28.05■■■□□ 2.08
CDX1-201ENST00000231656 TNS1Q9HBL0 1735 aaKnown RBP28.04■■■□□ 2.08
CDX1-201ENST00000231656 COL15A1P39059 1388 aa28.04■■■□□ 2.08
CDX1-201ENST00000231656 GRM8O00222 908 aa28.04■■■□□ 2.08
CDX1-201ENST00000231656 APBA3O96018 575 aa28.04■■■□□ 2.08
CDX1-201ENST00000231656 GIGYF2Q6Y7W6 1299 aaKnown RBP28.04■■■□□ 2.08
CDX1-201ENST00000231656 ERVV-1B6SEH8 477 aa28.03■■■□□ 2.08
CDX1-201ENST00000231656 PLSCR1O15162 318 aa28.03■■■□□ 2.08
CDX1-201ENST00000231656 TCIRG1Q13488 830 aa28.03■■■□□ 2.08
CDX1-201ENST00000231656 HLFQ16534 295 aa28.03■■■□□ 2.08
CDX1-201ENST00000231656 LRRFIP2Q9Y608 721 aaKnown RBP28.03■■■□□ 2.08
CDX1-201ENST00000231656 UTYO14607 1347 aa28.03■■■□□ 2.08
CDX1-201ENST00000231656 RPS6KA4O75676 772 aa28.01■■■□□ 2.08
CDX1-201ENST00000231656 UPF2Q9HAU5 1272 aaKnown RBP28.01■■■□□ 2.08
CDX1-201ENST00000231656 ATP8B2P98198 1209 aa28.01■■■□□ 2.07
CDX1-201ENST00000231656 TXNRD1Q16881 649 aa28.01■■■□□ 2.07
CDX1-201ENST00000231656 PLEKHM2Q8IWE5 1019 aa28.01■■■□□ 2.07
CDX1-201ENST00000231656 PROM2Q8N271 834 aa28.01■■■□□ 2.07
CDX1-201ENST00000231656 TBC1D32Q96NH3 1257 aa28.01■■■□□ 2.07
CDX1-201ENST00000231656 ISCA1Q9BUE6 129 aa28.01■■■□□ 2.07
CDX1-201ENST00000231656 ANKRD36CQ5JPF3 1778 aa28.01■■■□□ 2.07
CDX1-201ENST00000231656 GNPATO15228 680 aa28■■■□□ 2.07
CDX1-201ENST00000231656 CCDC191Q8NCU4 936 aa27.99■■■□□ 2.07
CDX1-201ENST00000231656 CWC25Q9NXE8 425 aaPredicted RBP27.99■■■□□ 2.07
CDX1-201ENST00000231656 A0A087WZG4 1122 aa27.98■■■□□ 2.07
CDX1-201ENST00000231656 CAMTA2O94983 1202 aa27.98■■■□□ 2.07
CDX1-201ENST00000231656 TRIM28Q13263 835 aaKnown RBP27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms