RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 RILPL2Q969X0 211 aa27.02■■□□□ 1.92
CCDC9-201ENST00000221922 LINS1Q8NG48 757 aa27.01■■□□□ 1.91
CCDC9-201ENST00000221922 IL1RAPL2Q9NP60 686 aa27.01■■□□□ 1.91
CCDC9-201ENST00000221922 ZNF496Q96IT1 587 aaPredicted RBP27.01■■□□□ 1.91
CCDC9-201ENST00000221922 LAMB4A4D0S4 1761 aa27■■□□□ 1.91
CCDC9-201ENST00000221922 TTC5Q8N0Z6 440 aa27■■□□□ 1.91
CCDC9-201ENST00000221922 DDX49Q9Y6V7 483 aaKnown RBP27■■□□□ 1.91
CCDC9-201ENST00000221922 GLI3P10071 1580 aa26.99■■□□□ 1.91
CCDC9-201ENST00000221922 EPB41L2O43491 1005 aaKnown RBP26.99■■□□□ 1.91
CCDC9-201ENST00000221922 C9orf78Q9NZ63 289 aaPredicted RBP26.99■■□□□ 1.91
CCDC9-201ENST00000221922 SNRPA1P09661 255 aaKnown RBP26.99■■□□□ 1.91
CCDC9-201ENST00000221922 UTYO14607 1347 aa26.99■■□□□ 1.91
CCDC9-201ENST00000221922 PCDH11XQ9BZA7 1347 aa26.99■■□□□ 1.91
CCDC9-201ENST00000221922 PCDH11YQ9BZA8 1340 aa26.99■■□□□ 1.91
CCDC9-201ENST00000221922 FMNL2Q96PY5 1086 aa26.98■■□□□ 1.91
CCDC9-201ENST00000221922 ANAPC15P60006 121 aa26.97■■□□□ 1.91
CCDC9-201ENST00000221922 TOM1L2Q6ZVM7 507 aa26.97■■□□□ 1.91
CCDC9-201ENST00000221922 CABP4P57796 275 aa26.97■■□□□ 1.91
CCDC9-201ENST00000221922 PKP1Q13835 747 aa26.96■■□□□ 1.91
CCDC9-201ENST00000221922 NUTM1Q86Y26 1132 aa26.96■■□□□ 1.91
CCDC9-201ENST00000221922 LMBRD1Q9NUN5 540 aa26.96■■□□□ 1.91
CCDC9-201ENST00000221922 CWF19L2Q2TBE0 894 aaKnown RBP26.96■■□□□ 1.91
CCDC9-201ENST00000221922 MCTP1Q6DN14 999 aa26.96■■□□□ 1.91
CCDC9-201ENST00000221922 ZGPATQ8N5A5 531 aaKnown RBP26.96■■□□□ 1.91
CCDC9-201ENST00000221922 CARD10Q9BWT7 1032 aa26.96■■□□□ 1.91
CCDC9-201ENST00000221922 LARP1Q6PKG0 1096 aaKnown RBP26.95■■□□□ 1.9
CCDC9-201ENST00000221922 ZCRB1Q8TBF4 217 aaKnown RBP26.95■■□□□ 1.9
CCDC9-201ENST00000221922 GRM8O00222 908 aa26.94■■□□□ 1.9
CCDC9-201ENST00000221922 MCM2P49736 904 aa26.94■■□□□ 1.9
CCDC9-201ENST00000221922 SHANK3Q9BYB0 1731 aa26.94■■□□□ 1.9
CCDC9-201ENST00000221922 USP42Q9H9J4 1324 aaKnown RBP26.94■■□□□ 1.9
CCDC9-201ENST00000221922 ZNF445P59923 1031 aa26.94■■□□□ 1.9
CCDC9-201ENST00000221922 PI4K2BQ8TCG2 481 aa26.94■■□□□ 1.9
CCDC9-201ENST00000221922 UBR2Q8IWV8 1755 aa26.94■■□□□ 1.9
CCDC9-201ENST00000221922 AIMP1Q12904 312 aaKnown RBP26.93■■□□□ 1.9
CCDC9-201ENST00000221922 OS9Q13438 667 aaPredicted RBP26.93■■□□□ 1.9
CCDC9-201ENST00000221922 LRP10Q7Z4F1 713 aa26.93■■□□□ 1.9
CCDC9-201ENST00000221922 ERC1Q8IUD2 1116 aa26.93■■□□□ 1.9
CCDC9-201ENST00000221922 ANO2Q9NQ90 1003 aa26.93■■□□□ 1.9
CCDC9-201ENST00000221922 ESPNB1AK53 854 aa26.93■■□□□ 1.9
CCDC9-201ENST00000221922 RIC3Q7Z5B4 369 aa26.93■■□□□ 1.9
CCDC9-201ENST00000221922 UNC5CLQ8IV45 518 aa26.93■■□□□ 1.9
CCDC9-201ENST00000221922 IL17RAQ96F46 866 aa26.93■■□□□ 1.9
CCDC9-201ENST00000221922 ZDHHC9Q9Y397 364 aa26.93■■□□□ 1.9
CCDC9-201ENST00000221922 PAPPAQ13219 1627 aa26.92■■□□□ 1.9
CCDC9-201ENST00000221922 TTC41PQ6P2S7 1318 aa26.92■■□□□ 1.9
CCDC9-201ENST00000221922 NKX1-1Q15270 411 aaPredicted RBP26.91■■□□□ 1.9
CCDC9-201ENST00000221922 CNTROBQ8N137 903 aa26.91■■□□□ 1.9
CCDC9-201ENST00000221922 XAGE3Q8WTP9 111 aa26.91■■□□□ 1.9
CCDC9-201ENST00000221922 MYL6BP14649 208 aa26.91■■□□□ 1.9
CCDC9-201ENST00000221922 IL2RBP14784 551 aa26.91■■□□□ 1.9
CCDC9-201ENST00000221922 USP16Q9Y5T5 823 aa26.91■■□□□ 1.9
CCDC9-201ENST00000221922 ERVV-2B6SEH9 535 aa26.9■■□□□ 1.9
CCDC9-201ENST00000221922 IGKV5-2P06315 115 aa26.9■■□□□ 1.9
CCDC9-201ENST00000221922 NEXNQ0ZGT2 675 aa26.9■■□□□ 1.9
CCDC9-201ENST00000221922 COPS6Q7L5N1 327 aa26.9■■□□□ 1.9
CCDC9-201ENST00000221922 PPP1R9BQ96SB3 815 aa26.9■■□□□ 1.9
CCDC9-201ENST00000221922 CLASRPQ8N2M8 674 aaKnown RBP26.89■■□□□ 1.9
CCDC9-201ENST00000221922 METTL22Q9BUU2 404 aaPredicted RBP26.89■■□□□ 1.9
CCDC9-201ENST00000221922 NEK4P51957 841 aa26.89■■□□□ 1.89
CCDC9-201ENST00000221922 CCDC173Q0VFZ6 552 aa26.89■■□□□ 1.89
CCDC9-201ENST00000221922 TRIM44Q96DX7 344 aaPredicted RBP26.89■■□□□ 1.89
CCDC9-201ENST00000221922 ERBB4Q15303 1308 aa26.89■■□□□ 1.89
CCDC9-201ENST00000221922 GLRX3O76003 335 aaKnown RBP26.88■■□□□ 1.89
CCDC9-201ENST00000221922 NASPP49321 788 aaPredicted RBP26.88■■□□□ 1.89
CCDC9-201ENST00000221922 ARFGEF2Q9Y6D5 1785 aa26.88■■□□□ 1.89
CCDC9-201ENST00000221922 NEURL1BA8MQ27 555 aa26.88■■□□□ 1.89
CCDC9-201ENST00000221922 GPATCH3Q96I76 525 aa26.88■■□□□ 1.89
CCDC9-201ENST00000221922 SUCLG2Q96I99 432 aa26.88■■□□□ 1.89
CCDC9-201ENST00000221922 TMX3Q96JJ7 454 aa26.88■■□□□ 1.89
CCDC9-201ENST00000221922 KAZALD1Q96I82 304 aa26.87■■□□□ 1.89
CCDC9-201ENST00000221922 ANKRD13DQ6ZTN6 518 aa26.86■■□□□ 1.89
CCDC9-201ENST00000221922 CUL4AQ13619 759 aa26.86■■□□□ 1.89
CCDC9-201ENST00000221922 ZSCAN23Q3MJ62 389 aa26.86■■□□□ 1.89
CCDC9-201ENST00000221922 KCPQ6ZWJ8 1503 aa26.85■■□□□ 1.89
CCDC9-201ENST00000221922 GCKRQ14397 625 aa26.85■■□□□ 1.89
CCDC9-201ENST00000221922 CAVIN1Q6NZI2 390 aaKnown RBP26.85■■□□□ 1.89
CCDC9-201ENST00000221922 AFDNP55196 1824 aaKnown RBP26.84■■□□□ 1.89
CCDC9-201ENST00000221922 BICC1Q9H694 974 aaKnown RBP26.84■■□□□ 1.89
CCDC9-201ENST00000221922 PALD1Q9ULE6 856 aa26.84■■□□□ 1.89
CCDC9-201ENST00000221922 SGSM2O43147 1006 aa26.83■■□□□ 1.89
CCDC9-201ENST00000221922 MYD88Q99836 296 aa26.83■■□□□ 1.89
CCDC9-201ENST00000221922 PRPF40AO75400 957 aaKnown RBP26.83■■□□□ 1.89
CCDC9-201ENST00000221922 HSPA4P34932 840 aa26.83■■□□□ 1.89
CCDC9-201ENST00000221922 EVA1CP58658 441 aa26.83■■□□□ 1.89
CCDC9-201ENST00000221922 INTS4Q96HW7 963 aaKnown RBP26.83■■□□□ 1.89
CCDC9-201ENST00000221922 STRN4Q9NRL3 753 aa26.83■■□□□ 1.89
CCDC9-201ENST00000221922 ECHDC1Q9NTX5 307 aa26.83■■□□□ 1.89
CCDC9-201ENST00000221922 TNS2Q63HR2 1409 aa26.82■■□□□ 1.88
CCDC9-201ENST00000221922 MAP4K4O95819 1239 aaPredicted RBP26.82■■□□□ 1.88
CCDC9-201ENST00000221922 GPT2Q8TD30 523 aa26.82■■□□□ 1.88
CCDC9-201ENST00000221922 COL15A1P39059 1388 aa26.82■■□□□ 1.88
CCDC9-201ENST00000221922 IFIT2P09913 472 aaKnown RBP26.81■■□□□ 1.88
CCDC9-201ENST00000221922 RAD50Q92878 1312 aa26.81■■□□□ 1.88
CCDC9-201ENST00000221922 NCLP19338 710 aaKnown RBP26.81■■□□□ 1.88
CCDC9-201ENST00000221922 ANP32BQ92688 251 aaKnown RBP26.8■■□□□ 1.88
CCDC9-201ENST00000221922 TOGARAM1Q9Y4F4 1720 aa26.8■■□□□ 1.88
CCDC9-201ENST00000221922 BRD1O95696 1058 aa26.8■■□□□ 1.88
CCDC9-201ENST00000221922 G3BP1Q13283 466 aaKnown RBP eCLIP26.8■■□□□ 1.88
CCDC9-201ENST00000221922 RUFY2Q8WXA3 655 aa26.8■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms