RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	GPR143	P51810	404 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	RNF4	P78317	190 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	RAE1	P78406	368 aa	Known RBP	10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	BIK	Q13323	160 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	TERF2	Q15554	542 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	GALNTL6	Q49A17	601 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	HLA-DQA1	Q5Y7H0	255 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	RNF111	Q6ZNA4	994 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	SLC29A4	Q7RTT9	530 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	CROCCP2	Q86T23	111 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	CYP4Z2P	Q8N1L4	340 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	BCORP1	Q8N888	145 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	C7orf57	Q8NEG2	295 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	ADCY4	Q8NFM4	1077 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	OR5L2	Q8NGL0	311 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	ZNF721	Q8TF20	911 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	C16orf78	Q8WTQ4	265 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	ART5	Q96L15	291 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	PELO	Q9BRX2	385 aa	Known RBP	10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	RNF32	Q9H0A6	362 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	OLAH	Q9NV23	265 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	HPF1	Q9NWY4	346 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	MCM8	Q9UJA3	840 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	UTS2R	Q9UKP6	389 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	YARS2	Q9Y2Z4	477 aa	Known RBP	10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	TRAF6	Q9Y4K3	522 aa		10.27	□□□□□ -0.77
DDB1-222	ENST00000543627	ANKUB1	A6NFN9	424 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627		G3V3Y1	287 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	TYROBP	O43914	113 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	NPHS1	O60500	1241 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	SLC25A12	O75746	678 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	HSPA4L	O95757	839 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	CT62	P0C5K7	136 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	SLC35E2	P0CK97	266 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	CPM	P14384	443 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	SSTR4	P31391	388 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	TIA1	P31483	386 aa	Known RBP eCLIP	10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	RFC3	P40938	356 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	HLCS	P50747	726 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	HK2	P52789	917 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	GPR85	P60893	370 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	IGLV3-21	P80748	117 aa	Predicted RBP	10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	HEPACAM	Q14CZ8	416 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	CHI3L2	Q15782	390 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	HHAT	Q5VTY9	493 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	SLC48A1	Q6P1K1	146 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	FAM111B	Q6SJ93	734 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	LRIG3	Q6UXM1	1119 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	GALNT12	Q8IXK2	581 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	CCDC116	Q8IYX3	515 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	CLYBL	Q8N0X4	340 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	TMEM178A	Q8NBL3	297 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	FAM98A	Q8NCA5	519 aa	Known RBP	10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	GALNT11	Q8NCW6	608 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	OR5M3	Q8NGP4	307 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	FAR1	Q8WVX9	515 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	GFM2	Q969S9	779 aa	Known RBP	10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	PPP1R36	Q96LQ0	422 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	TAAR6	Q96RI8	345 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	GIMAP4	Q9NUV9	329 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	MYOT	Q9UBF9	498 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	HEY2	Q9UBP5	337 aa		10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	GCN1	Q92616	2671 aa	Known RBP	10.26	□□□□□ -0.77
DDB1-222	ENST00000543627	PRRC2C	Q9Y520	2896 aa	Known RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	C2orf92	A0A1B0GVN3	265 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	NPIPA5	E9PKD4	350 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	AKAP10	O43572	662 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	SKAP2	O75563	359 aa	Predicted RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	LYPLA1	O75608	230 aa	Predicted RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	NEURL1	O76050	574 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	OR6B1	O95007	311 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	LRAT	O95237	230 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	CRYAB	P02511	175 aa	Known RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	CSNK2A2	P19784	350 aa	Predicted RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	SOX3	P41225	446 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	SERPINB4	P48594	390 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	NR0B1	P51843	470 aa	Known RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	KCNK10	P57789	538 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	TRA2B	P62995	288 aa	Known RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	RPL38	P63173	70 aa	Known RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	ALDH6A1	Q02252	535 aa	Known RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	LTB4R	Q15722	352 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	BEND6	Q5SZJ8	279 aa	Predicted RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	FHL5	Q5TD97	284 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	NOXRED1	Q6NXP6	359 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	RPUSD3	Q6P087	351 aa	Known RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	C9orf40	Q8IXQ3	194 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	LGI4	Q8N135	537 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	MDS2	Q8NDY4	140 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	CLHC1	Q8NHS4	586 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	TWIST2	Q8WVJ9	160 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	FBXL20	Q96IG2	436 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	MAGED4	Q96JG8	741 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	BBS4	Q96RK4	519 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	RASL10B	Q96S79	203 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	TRMO	Q9BU70	441 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	STMN4	Q9H169	189 aa	Predicted RBP	10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms