RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 IMP4Q96G21 291 aaKnown RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 CDKN2AIPNLQ96HQ2 116 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 FAM129BQ96TA1 746 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 PTGES2Q9H7Z7 377 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ENY2Q9NPA8 101 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 SCN7AQ01118 1682 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 A6NIZ1 184 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 M0R233 179 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 SLC33A1O00400 549 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 CDC40O60508 579 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 DLDP09622 509 aaKnown RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 CD38P28907 300 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 HTR3AP46098 478 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 RAP1BP61224 184 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 RAP1AP62834 184 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 POU6F2P78424 691 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ARHGAP1Q07960 439 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 SLC10A6Q3KNW5 377 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ALG1LQ6GMV1 187 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 CMTM8Q8IZV2 173 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 FNDC8Q8TC99 324 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 PPP1R13LQ8WUF5 828 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 C12orf43Q96C57 262 aaKnown RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 HYLS1Q96M11 299 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 CCDC115Q96NT0 180 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 RSPH9Q9H1X1 276 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 SYT4Q9H2B2 425 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 MARCH7Q9H992 704 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 RBM7Q9Y580 266 aaKnown RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ARL5AQ9Y689 179 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 R4GN57 208 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 PAPPAQ13219 1627 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 TRBV23OR9-2A0A075B6M9 112 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 C4orf47A7E2U8 309 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 CPNE3O75131 537 aaKnown RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 TMEM63AO94886 807 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 CSF1P09603 554 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 IL4RP24394 825 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 LSM3P62310 102 aaKnown RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 DSC3Q14574 896 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 MAD2L1BPQ15013 274 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 NPY5RQ15761 445 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ACTBL2Q562R1 376 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 NLRP8Q86W28 1048 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 TMEM178AQ8NBL3 297 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 SLC37A3Q8NCC5 494 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 OR56A3Q8NH54 315 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 NFKBIDQ8NI38 313 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 XAGE5Q8WWM1 108 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 PSMG2Q969U7 264 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ZC3H10Q96K80 434 aaKnown RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 TSSK6Q9BXA6 273 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ELL3Q9HB65 397 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 SNTG1Q9NSN8 517 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ZDHHC2Q9UIJ5 367 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 UTS2RQ9UKP6 389 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 LRP5O75197 1615 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 CIB4A0PJX0 185 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 NUDT19A8MXV4 375 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 TOR1BO14657 336 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 PCDHGA12O60330 932 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 FGF4P08620 206 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 THEGLP0DJG4 465 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 BMP1P13497 986 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 PCGF2P35227 344 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ACTBP60709 375 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ACTG1P63261 375 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 HSPB3Q12988 150 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 RAB33AQ14088 237 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 EFR3AQ14156 821 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 CLVS2Q5SYC1 327 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 CADM2Q8N3J6 435 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 SLC9A6Q92581 669 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 PKP2Q99959 881 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 SAV1Q9H4B6 383 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-211ENST00000543710 DKKL1Q9UK85 242 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 TBC1D24Q9ULP9 559 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 NUMBLQ9Y6R0 609 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 GLI3P10071 1580 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 MYH6P13533 1939 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 hCG_2039718K7EN88 272 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 STBD1O95210 358 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 IFNA2P01563 188 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 FHP07954 510 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 S100A2P29034 98 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 FMO3P31513 532 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 GMPRP36959 345 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ECI1P42126 302 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 KCNC1P48547 511 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 NOVP48745 357 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ZNF84P51523 738 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 TAS2R39P59534 338 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 GRIN2CQ14957 1233 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 C5orf46Q6UWT4 87 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 SHFQ7M4L6 423 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 PXKQ7Z7A4 578 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 SLC22A16Q86VW1 577 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 TP53INP2Q8IXH6 220 aa7.49□□□□□ -1.21
VPS13D-211ENST00000543710 ZNF565Q8N9K5 539 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms