RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 SYT2Q8N9I0 419 aaPredicted RBP2.62□□□□□ -1.99
SCFD1-219ENST00000556413 OR52B6Q8NGF0 335 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 OR10Q1Q8NGQ4 319 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 MRAPQ8TCY5 172 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 SLAMF9Q96A28 289 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 LINC00615Q96LM1 132 aaPredicted RBP2.62□□□□□ -1.99
SCFD1-219ENST00000556413 TAAR1Q96RJ0 339 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 MGME1Q9BQP7 344 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 UBAC1Q9BSL1 405 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 CCDC28BQ9BUN5 200 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 YTHDF1Q9BYJ9 559 aaKnown RBP2.62□□□□□ -1.99
SCFD1-219ENST00000556413 NAPBQ9H115 298 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 CCDC68Q9H2F9 335 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 VAT1LQ9HCJ6 419 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 NSMCE4AQ9NXX6 385 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 CYP39A1Q9NYL5 469 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 CHORDC1Q9UHD1 332 aaPredicted RBP2.62□□□□□ -1.99
SCFD1-219ENST00000556413 PRDM4Q9UKN5 801 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 IKZF3Q9UKT9 509 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 SNX8Q9Y5X2 465 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 COL11A1P12107 1806 aaPredicted RBP2.62□□□□□ -1.99
SCFD1-219ENST00000556413 COL4A6Q14031 1691 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 WDFY4Q6ZS81 3184 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 ELP1O95163 1332 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 MROH7Q68CQ1 1323 aa2.62□□□□□ -1.99
SCFD1-219ENST00000556413 GBF1Q92538 1859 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 IGHV3-20A0A0C4DH32 117 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 A0A1W2PPK0 400 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 FAM220BPB1ANY3 271 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 TRIM77I1YAP6 450 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 HAT1O14929 419 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 TBX10O75333 385 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 SH3BGRLO75368 114 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 LY6G6DO95868 133 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 IQCF3P0C7M6 154 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 CTNNB1P35222 781 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 MATR3P43243 847 aaKnown RBP eCLIP2.61□□□□□ -1.99
SCFD1-219ENST00000556413 ALDH3A2P51648 485 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 VCPP55072 806 aaKnown RBP2.61□□□□□ -1.99
SCFD1-219ENST00000556413 ARHGAP1Q07960 439 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 PRKG2Q13237 762 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 CDC37Q16543 378 aaPredicted RBP2.61□□□□□ -1.99
SCFD1-219ENST00000556413 OLFML2AQ68BL7 652 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 MFSD12Q6NUT3 480 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 CFAP161Q6P656 301 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 PP632Q6XCG6 107 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 RPAINQ86UA6 219 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 CATSPER3Q86XQ3 398 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 C4orf32Q8N8J7 132 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 GMCL1P1Q8NEA9 526 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 OR4K1Q8NGD4 311 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 AGAP11Q8TF27 550 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 SSC4DQ8WTU2 575 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 TEKT4Q8WW24 435 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 MTG1Q9BT17 334 aaPredicted RBP2.61□□□□□ -1.99
SCFD1-219ENST00000556413 MRPL1Q9BYD6 325 aaKnown RBP2.61□□□□□ -1.99
SCFD1-219ENST00000556413 LRRCC1Q9C099 1032 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 ZMYND12Q9H0C1 365 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 MTIF3Q9H2K0 278 aaKnown RBP2.61□□□□□ -1.99
SCFD1-219ENST00000556413 CNOT10Q9H9A5 744 aaKnown RBP2.61□□□□□ -1.99
SCFD1-219ENST00000556413 NRBP1Q9UHY1 535 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 BARX2Q9UMQ3 279 aaPredicted RBP2.61□□□□□ -1.99
SCFD1-219ENST00000556413 CHKBQ9Y259 395 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 WDR83OSQ9Y284 106 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 PARP14Q460N5 1801 aa2.61□□□□□ -1.99
SCFD1-219ENST00000556413 LCTP09848 1927 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 DMDP11532 3685 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 MCM3APO60318 1980 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 hCG_1809904A0A1W2PP81 198 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 A0A1W2PPE2 198 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 A0A1W2PR64 198 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 PTGESO14684 152 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 PSMD10O75832 226 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 RAB40ALP0C0E4 278 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 LINGO3P0C6S8 592 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 GHRP10912 638 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 PDHBP11177 359 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 DNAJB1P25685 340 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 COPB2P35606 906 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 NNMTP40261 264 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 VAMP7P51809 220 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 NDUFV3P56181 108 aaKnown RBP2.6□□□□□ -1.99
SCFD1-219ENST00000556413 HSPB3Q12988 150 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 SRSF9Q13242 221 aaKnown RBP eCLIP2.6□□□□□ -1.99
SCFD1-219ENST00000556413 GPM6BQ13491 265 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 TMEM266Q2M3C6 531 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 QRICH1Q2TAL8 776 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 MCMDC2Q4G0Z9 681 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 EPC2Q52LR7 807 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 ATAD3CQ5T2N8 411 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 AGAP7PQ5VUJ5 663 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 PRR27Q6MZM9 219 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 CAMKMTQ7Z624 323 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 NDUFAF2Q8N183 169 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 SPATA33Q96N06 139 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 TGS1Q96RS0 853 aaKnown RBP2.6□□□□□ -1.99
SCFD1-219ENST00000556413 CCDC106Q9BWC9 280 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 Q9H8V8 135 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 ANKZF1Q9H8Y5 726 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 ANAPC2Q9UJX6 822 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms