RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 BBOF1Q8ND07 529 aa16.54■□□□□ 0.24
SHKBP1-227ENST00000602011 CDKL2Q92772 493 aa16.54■□□□□ 0.24
SHKBP1-227ENST00000602011 RASL10BQ96S79 203 aa16.54■□□□□ 0.24
SHKBP1-227ENST00000602011 DEFB127Q9H1M4 99 aa16.54■□□□□ 0.24
SHKBP1-227ENST00000602011 IL1RL2Q9HB29 575 aa16.54■□□□□ 0.24
SHKBP1-227ENST00000602011 HRH3Q9Y5N1 445 aa16.54■□□□□ 0.24
SHKBP1-227ENST00000602011 C4orf51C9J302 202 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 E7ESA3 106 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 CCDC188H7C350 402 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 GLSO94925 669 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 COX7A2P14406 83 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 TNNI3P19429 210 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 ACVR2AP27037 513 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 RFC3P40938 356 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 CASP2P42575 452 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 PGGT1BP53609 377 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 PMPCAQ10713 525 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 MPEG1Q2M385 716 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 HP1BP3Q5SSJ5 553 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 CHSY3Q70JA7 882 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 DND1Q8IYX4 353 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 FAM109AQ8N4B1 249 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 MARVELD2Q8N4S9 558 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 OR5M3Q8NGP4 307 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 PTPMT1Q8WUK0 201 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 ANKRD49Q8WVL7 239 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 ZNF559Q9BR84 538 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 PRDM7Q9NQW5 492 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 SACM1LQ9NTJ5 587 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 MS4A12Q9NXJ0 267 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 WWOXQ9NZC7 414 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 TXNDC16Q9P2K2 825 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 TNFRSF10DQ9UBN6 386 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 COPS7AQ9UBW8 275 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 ADGRE2Q9UHX3 823 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 PCDHGB3Q9Y5G1 929 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 PSAT1Q9Y617 370 aa16.53■□□□□ 0.24
SHKBP1-227ENST00000602011 WDR1O75083 606 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 PDE9AO76083 593 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 SEC31AO94979 1220 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 P04436 131 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 RNF4P78317 190 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 TFF3Q07654 80 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 PDIA2Q13087 525 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 SLC10A1Q14973 349 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 PDK4Q16654 411 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 XKR6Q5GH73 641 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 EMC4Q5J8M3 183 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 SLC15A4Q8N697 577 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 FAM47BQ8NA70 645 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 FBXO36Q8NEA4 188 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 SARAFQ96BY9 339 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 MCMBPQ9BTE3 642 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 TTTY12Q9BZ98 90 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 DEPPQ9NTK1 212 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 RNF14Q9UBS8 474 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 ZNF490Q9ULM2 529 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 EDARQ9UNE0 448 aa16.52■□□□□ 0.24
SHKBP1-227ENST00000602011 A0A0G2JN53 185 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 NPIPA2E9PIF3 369 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 NPIPA3F8WFD2 350 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 WWP2O00308 870 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 AQP7O14520 342 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 HCN1O60741 890 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 OR6B1O95007 311 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 GABRA1P14867 456 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 PPP2R1BP30154 601 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 SOX3P41225 446 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 ZFP36L2P47974 494 aaKnown RBP16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 HNRNPFP52597 415 aaKnown RBP16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 HK2P52789 917 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 ARFIP1P53367 373 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 PCDH1Q08174 1060 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 DOC2AQ14183 400 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 E2F2Q14209 437 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 AP5B1Q2VPB7 878 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 B3GNT6Q6ZMB0 384 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 TMEM52Q8NDY8 209 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 NUBPLQ8TB37 319 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 ART5Q96L15 291 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 SMC6Q96SB8 1091 aa16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 WDR83Q9BRX9 315 aaKnown RBP16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 PTBP2Q9UKA9 531 aaKnown RBP16.51■□□□□ 0.23
SHKBP1-227ENST00000602011 C17orf105B2RV13 164 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 TGFBR3LH3BV60 316 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 TAPBPO15533 448 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 PRKNO60260 465 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 SCELO95171 688 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 TBX6O95947 436 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 S100BP04271 92 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 CCDC166P0CW27 439 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 STMN1P16949 149 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 PAFAH1B1P43034 410 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 NUP107P57740 925 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 IRF8Q02556 426 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 ZNF460Q14592 562 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 PIGGQ5H8A4 983 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 WLSQ5T9L3 541 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 FAM47EQ6ZV65 393 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms