RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 NSG1P42857 185 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 XCR1P46094 333 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 GZMKP49863 264 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 CDH12P55289 794 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 AP1S1P61966 158 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 MLLT11Q13015 90 aaPredicted RBP17.06■□□□□ 0.32
NUP54-205ENST00000507257 TARDBPQ13148 414 aaKnown RBP eCLIP17.06■□□□□ 0.32
NUP54-205ENST00000507257 ZXDCQ2QGD7 858 aaPredicted RBP17.06■□□□□ 0.32
NUP54-205ENST00000507257 ARMC12Q5T9G4 340 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 LIPJQ5W064 366 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 TRAF7Q6Q0C0 670 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 HSDL2Q6YN16 418 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 RFPL4BQ6ZWI9 263 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 BBS7Q8IWZ6 715 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 NPAS3Q8IXF0 933 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 LAS2Q8IYD9 372 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 MARVELD3Q96A59 401 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 COQ8BQ96D53 544 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 PIP5K1AQ99755 562 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 BBS2Q9BXC9 721 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 MMP28Q9H239 520 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 ACER3Q9NUN7 267 aa17.06■□□□□ 0.32
NUP54-205ENST00000507257 SPATA6Q9NWH7 488 aaPredicted RBP17.06■□□□□ 0.32
NUP54-205ENST00000507257 SLC16A5O15375 505 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 ARHGEF9O43307 516 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 ZNF780AO75290 641 aaPredicted RBP17.05■□□□□ 0.32
NUP54-205ENST00000507257 CYP7B1O75881 506 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 PDE9AO76083 593 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 HLA-DQB1P01920 261 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 CSF3P09919 207 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 CRISP1P54107 249 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 FAM189BP81408 668 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 MAP2K5Q13163 448 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 SP140Q13342 867 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 TP53BP2Q13625 1128 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 SPHARQ15513 63 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 TRIM60Q495X7 471 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 FRMPD2BQ6IN97 320 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 PTCHD4Q6ZW05 846 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 NXPE1Q8N323 547 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 TTC9BQ8N6N2 239 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 ATAD1Q8NBU5 361 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 GOT1L1Q8NHS2 421 aaPredicted RBP17.05■□□□□ 0.32
NUP54-205ENST00000507257 GEMIN6Q8WXD5 167 aaKnown RBP17.05■□□□□ 0.32
NUP54-205ENST00000507257 KLHL6Q8WZ60 621 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 SH3KBP1Q96B97 665 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 CXorf40BQ96DE9 158 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 MND1Q9BWT6 205 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 C11orf54Q9H0W9 315 aaPredicted RBP17.05■□□□□ 0.32
NUP54-205ENST00000507257 TMEM38AQ9H6F2 299 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 DNAJC11Q9NVH1 559 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 VPS29Q9UBQ0 182 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 CRLS1Q9UJA2 301 aa17.05■□□□□ 0.32
NUP54-205ENST00000507257 GLYATL1P3A0A0U1RQE8 302 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 RNASET2O00584 256 aaKnown RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 PROM1O43490 865 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 TNFRSF21O75509 655 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 C1QBP02746 253 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 MPC1LP0DKB6 136 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 IL12RB1P42701 662 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 NKX3-2P78367 333 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 GPLD1P80108 840 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 EFR3AQ14156 821 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 DOC2BQ14184 412 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 MRPL58Q14197 206 aaKnown RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 QPRTQ15274 297 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 TRIM71Q2Q1W2 868 aaKnown RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 CEP78Q5JTW2 689 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 CPTPQ5TA50 214 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 GDF6Q6KF10 455 aaPredicted RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 CXorf57Q6NSI4 855 aaKnown RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 FAM109AQ8N4B1 249 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 PROKR2Q8NFJ6 384 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 CREB3L4Q8TEY5 395 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 TMEM80Q96HE8 168 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 B3GALT6Q96L58 329 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 SAMD11Q96NU1 681 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 FAM129BQ96TA1 746 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 ADAM2Q99965 735 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 EBPLQ9BY08 206 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 EXOSC4Q9NPD3 245 aaKnown RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 TIGARQ9NQ88 270 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 SSR3Q9UNL2 185 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 TMA7Q9Y2S6 64 aaKnown RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 VWA8A3KMH1 1905 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 A0A0B4J293 547 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 TFECO14948 347 aaPredicted RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 TPST2O60704 377 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 ICMTO60725 284 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 PRAMEF4O60810 478 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 CSO75390 466 aaKnown RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 DDNO94850 711 aaPredicted RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 TRBC1P01850 177 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 ATP5C1P36542 298 aaKnown RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 MVDP53602 400 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 AP1S2P56377 157 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 CDKN3Q16667 212 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 PTCHD3Q3KNS1 767 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 CRB2Q5IJ48 1285 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 PRAMEF9Q5VWM5 478 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 173.7 ms