RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 IKZF4Q9H2S9 585 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 OPA3Q9H6K4 179 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 RRP15Q9Y3B9 282 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 NWD2Q9ULI1 1742 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 OR52A4PA6NMU1 304 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 OR5F1O95221 314 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 PTHP01270 115 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 ANXA2P07355 339 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 HK3P52790 923 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 CDC42P60953 191 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 CSNK2A1P68400 391 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 FBXO42Q6P3S6 717 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 AGTRAPQ6RW13 159 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 PIK3C3Q8NEB9 887 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 SLC38A4Q969I6 547 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 CCDC74BQ96LY2 380 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 ORAI3Q9BRQ5 295 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 CROTQ9UKG9 612 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 SATB2Q9UPW6 733 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 PLCH1Q4KWH8 1693 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 GLOD5A6NK44 160 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 MASP2O00187 686 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 PIGRP01833 764 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 MTHFD1P11586 935 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 PECAM1P16284 738 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 LHCGRP22888 699 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 AQP1P29972 269 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 SSTR1P30872 391 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 GABRA3P34903 492 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 OR1D4P47884 311 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 FASLGP48023 281 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 OFCC1Q8IZS5 231 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 PPP1R35Q8TAP8 253 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 CREB3L4Q8TEY5 395 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 QKIQ96PU8 341 aaKnown RBP eCLIP8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 OR5B2Q96R09 309 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 TMEM168Q9H0V1 697 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 POLE4Q9NR33 117 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 SPATA7Q9P0W8 599 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 PYCARDQ9ULZ3 195 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 CCL26Q9Y258 94 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 STX16-NPEPL1H3BU86 382 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 STX16O14662 325 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 RGS5O15539 181 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 ADAM12O43184 909 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 RCVRNP35243 200 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 NFE2L1Q14494 772 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 EXT1Q16394 746 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 PROSER1Q86XN7 944 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF567Q8N184 647 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 FBXL14Q8N1E6 418 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF283Q8N7M2 679 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 CHRAC1Q9NRG0 131 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 TBC1D23Q9NUY8 699 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 hCG_1818297A0A087WSY0 165 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 A0A1W2PRB8 838 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 RGSL1A5PLK6 1076 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 ZSCAN5DPP0CG00 497 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 AOC1P19801 751 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 MAGEA8P43361 318 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 IL5RAQ01344 420 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 SLC14A2Q15849 920 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 FBXO48Q5FWF7 155 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 TNFAIP8L2Q6P589 184 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 BBS12Q6ZW61 710 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 IQCHQ86VS3 1027 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 RAB39BQ96DA2 213 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 FKRPQ9H9S5 495 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 UBTD1Q9HAC8 227 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 SLC5A6Q9Y289 635 aa8.86□□□□□ -0.99
LIMCH1-202ENST00000381753 PRSS44E7EML9 344 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 MRASO14807 208 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 SP9P0CG40 484 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 CBLP22681 906 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 MC3RP41968 323 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF630Q2M218 657 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 ARMC3Q5W041 872 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PIWIL4Q7Z3Z4 852 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 GALNT4Q8N4A0 578 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 CHST4Q8NCG5 386 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 HSPBAP1Q96EW2 488 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 C1orf74Q96LT6 269 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 SLC2A13Q96QE2 648 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 IFT27Q9BW83 186 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 SLC19A3Q9BZV2 496 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 ARMCX1Q9P291 453 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PCDH10Q9P2E7 1040 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 MBD1Q9UIS9 605 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PROCRQ9UNN8 238 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PIK3C2AO00443 1686 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PSMD11O00231 422 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 WRBO00258 174 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PTGESO14684 152 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PIAS2O75928 621 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 GYPCP04921 128 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 UBTFL6P0CB48 400 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 ALOX12P18054 663 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 DSC3Q14574 896 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 KIR2DS3Q14952 304 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 TSC22D1Q15714 1073 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms