RNA–Protein interactions for RNA: ENST00000640554.1

SDHD-209, Transcript of succinate dehydrogenase complex subunit D, human

TSL 5

Gene SDHD, Length 727 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDHD-209	ENST00000640554	IL6ST	P40189	918 aa	Predicted RBP	18.69	■□□□□ 0.58
SDHD-209	ENST00000640554	NEUROD2	Q15784	382 aa		18.69	■□□□□ 0.58
SDHD-209	ENST00000640554	ZBTB1	Q9Y2K1	713 aa		18.69	■□□□□ 0.58
SDHD-209	ENST00000640554	CD2AP	Q9Y5K6	639 aa		18.69	■□□□□ 0.58
SDHD-209	ENST00000640554	TUBGCP6	Q96RT7	1819 aa		18.69	■□□□□ 0.58
SDHD-209	ENST00000640554	COL5A3	P25940	1745 aa	Predicted RBP	18.69	■□□□□ 0.58
SDHD-209	ENST00000640554	SIPA1L3	O60292	1781 aa	Predicted RBP	18.68	■□□□□ 0.58
SDHD-209	ENST00000640554	CANX	P27824	592 aa	Known RBP	18.68	■□□□□ 0.58
SDHD-209	ENST00000640554	EIF5	P55010	431 aa	Known RBP	18.68	■□□□□ 0.58
SDHD-209	ENST00000640554	CALD1	Q05682	793 aa	Known RBP	18.68	■□□□□ 0.58
SDHD-209	ENST00000640554	MIS18A	Q9NYP9	233 aa		18.68	■□□□□ 0.58
SDHD-209	ENST00000640554	NARF	Q9UHQ1	456 aa		18.68	■□□□□ 0.58
SDHD-209	ENST00000640554	COL24A1	Q17RW2	1714 aa		18.68	■□□□□ 0.58
SDHD-209	ENST00000640554	USP42	Q9H9J4	1324 aa	Known RBP	18.68	■□□□□ 0.58
SDHD-209	ENST00000640554	UBR2	Q8IWV8	1755 aa		18.68	■□□□□ 0.58
SDHD-209	ENST00000640554	TJP1	Q07157	1748 aa		18.67	■□□□□ 0.58
SDHD-209	ENST00000640554	EIF4A1	P60842	406 aa	Known RBP	18.67	■□□□□ 0.58
SDHD-209	ENST00000640554	NCBP3	Q53F19	620 aa	Known RBP	18.67	■□□□□ 0.58
SDHD-209	ENST00000640554	THUMPD2	Q9BTF0	503 aa	Known RBP	18.67	■□□□□ 0.58
SDHD-209	ENST00000640554	TSPYL4	Q9UJ04	414 aa		18.67	■□□□□ 0.58
SDHD-209	ENST00000640554	TRIM35	Q9UPQ4	493 aa		18.67	■□□□□ 0.58
SDHD-209	ENST00000640554	RRP7A	Q9Y3A4	280 aa	Known RBP	18.67	■□□□□ 0.58
SDHD-209	ENST00000640554	USP16	Q9Y5T5	823 aa		18.67	■□□□□ 0.58
SDHD-209	ENST00000640554	VIRMA	Q69YN4	1812 aa	Known RBP	18.66	■□□□□ 0.58
SDHD-209	ENST00000640554	APAF1	O14727	1248 aa		18.66	■□□□□ 0.58
SDHD-209	ENST00000640554	MMP10	P09238	476 aa		18.66	■□□□□ 0.58
SDHD-209	ENST00000640554	COL15A1	P39059	1388 aa		18.66	■□□□□ 0.58
SDHD-209	ENST00000640554	GIGYF1	O75420	1035 aa	Predicted RBP	18.65	■□□□□ 0.58
SDHD-209	ENST00000640554	CCDC184	Q52MB2	194 aa		18.65	■□□□□ 0.58
SDHD-209	ENST00000640554	PARP3	Q9Y6F1	533 aa		18.65	■□□□□ 0.58
SDHD-209	ENST00000640554	CHL1	O00533	1208 aa		18.64	■□□□□ 0.57
SDHD-209	ENST00000640554	A1BG	P04217	495 aa		18.64	■□□□□ 0.57
SDHD-209	ENST00000640554	MYH14	Q7Z406	1995 aa	Known RBP	18.63	■□□□□ 0.57
SDHD-209	ENST00000640554	KLHL34	Q8N239	644 aa		18.63	■□□□□ 0.57
SDHD-209	ENST00000640554	SRP68	Q9UHB9	627 aa	Known RBP	18.63	■□□□□ 0.57
SDHD-209	ENST00000640554	RGL2	O15211	777 aa		18.62	■□□□□ 0.57
SDHD-209	ENST00000640554	TM4SF1	P30408	202 aa		18.62	■□□□□ 0.57
SDHD-209	ENST00000640554	FKBP8	Q14318	412 aa		18.62	■□□□□ 0.57
SDHD-209	ENST00000640554	USPL1	Q5W0Q7	1092 aa		18.62	■□□□□ 0.57
SDHD-209	ENST00000640554	CFAP44	Q96MT7	982 aa		18.62	■□□□□ 0.57
SDHD-209	ENST00000640554	ERBB4	Q15303	1308 aa		18.61	■□□□□ 0.57
SDHD-209	ENST00000640554	CCDC27	Q2M243	656 aa		18.61	■□□□□ 0.57
SDHD-209	ENST00000640554	PRAMEF22	A3QJZ6	481 aa		18.6	■□□□□ 0.57
SDHD-209	ENST00000640554	NGEF	Q8N5V2	710 aa		18.6	■□□□□ 0.57
SDHD-209	ENST00000640554	DLG5	Q8TDM6	1919 aa		18.6	■□□□□ 0.57
SDHD-209	ENST00000640554	TGFB2	P61812	414 aa		18.59	■□□□□ 0.57
SDHD-209	ENST00000640554	GNAI1	P63096	354 aa		18.59	■□□□□ 0.57
SDHD-209	ENST00000640554	CLEC4G	Q6UXB4	293 aa		18.59	■□□□□ 0.57
SDHD-209	ENST00000640554	ZNF330	Q9Y3S2	320 aa	Predicted RBP	18.59	■□□□□ 0.57
SDHD-209	ENST00000640554	HOXB7	P09629	217 aa		18.58	■□□□□ 0.56
SDHD-209	ENST00000640554	DZIP3	Q86Y13	1208 aa	Known RBP	18.58	■□□□□ 0.56
SDHD-209	ENST00000640554	CHMP4A	Q9BY43	222 aa		18.58	■□□□□ 0.56
SDHD-209	ENST00000640554	IFT57	Q9NWB7	429 aa		18.58	■□□□□ 0.56
SDHD-209	ENST00000640554	NBPF26	B4DH59	902 aa		18.57	■□□□□ 0.56
SDHD-209	ENST00000640554	NBPF10	Q6P3W6	841 aa	Known RBP	18.57	■□□□□ 0.56
SDHD-209	ENST00000640554	NBPF15	Q8N660	670 aa		18.57	■□□□□ 0.56
SDHD-209	ENST00000640554	BCL2L12	Q9HB09	334 aa		18.57	■□□□□ 0.56
SDHD-209	ENST00000640554	TBC1D2B	Q9UPU7	963 aa		18.57	■□□□□ 0.56
SDHD-209	ENST00000640554	ZNF652	Q9Y2D9	606 aa		18.57	■□□□□ 0.56
SDHD-209	ENST00000640554	LAS1L	Q9Y4W2	734 aa	Known RBP	18.57	■□□□□ 0.56
SDHD-209	ENST00000640554	ZNF853	P0CG23	659 aa		18.56	■□□□□ 0.56
SDHD-209	ENST00000640554	NFIX	Q14938	502 aa		18.56	■□□□□ 0.56
SDHD-209	ENST00000640554	GPR162	Q16538	588 aa		18.56	■□□□□ 0.56
SDHD-209	ENST00000640554	NLGN2	Q8NFZ4	835 aa		18.56	■□□□□ 0.56
SDHD-209	ENST00000640554	POLRMT	O00411	1230 aa	Known RBP	18.55	■□□□□ 0.56
SDHD-209	ENST00000640554	CAMTA2	O94983	1202 aa		18.55	■□□□□ 0.56
SDHD-209	ENST00000640554	ERVV-1	B6SEH8	477 aa		18.54	■□□□□ 0.56
SDHD-209	ENST00000640554	GRIN3B	O60391	1043 aa		18.54	■□□□□ 0.56
SDHD-209	ENST00000640554	DDR1	Q08345	913 aa		18.54	■□□□□ 0.56
SDHD-209	ENST00000640554	SETDB2	Q96T68	719 aa		18.54	■□□□□ 0.56
SDHD-209	ENST00000640554	KDM3B	Q7LBC6	1761 aa		18.54	■□□□□ 0.56
SDHD-209	ENST00000640554	SERPINB2	P05120	415 aa		18.53	■□□□□ 0.56
SDHD-209	ENST00000640554	WWC1	Q8IX03	1113 aa		18.53	■□□□□ 0.56
SDHD-209	ENST00000640554	IL16	Q14005	1332 aa		18.52	■□□□□ 0.56
SDHD-209	ENST00000640554	C4A	P0C0L4	1744 aa		18.52	■□□□□ 0.56
SDHD-209	ENST00000640554	CCER2	I3L3R5	266 aa		18.52	■□□□□ 0.56
SDHD-209	ENST00000640554	FAM9B	Q8IZU0	186 aa		18.52	■□□□□ 0.56
SDHD-209	ENST00000640554	MBIP	Q9NS73	344 aa		18.52	■□□□□ 0.56
SDHD-209	ENST00000640554	PDZRN3	Q9UPQ7	1066 aa		18.52	■□□□□ 0.56
SDHD-209	ENST00000640554	C10orf71	Q711Q0	1435 aa		18.51	■□□□□ 0.55
SDHD-209	ENST00000640554	EIF2S2	P20042	333 aa	Known RBP	18.51	■□□□□ 0.55
SDHD-209	ENST00000640554	PIP4K2A	P48426	406 aa	Predicted RBP	18.51	■□□□□ 0.55
SDHD-209	ENST00000640554	TBC1D9B	Q66K14	1250 aa		18.51	■□□□□ 0.55
SDHD-209	ENST00000640554	KIF6	Q6ZMV9	814 aa		18.51	■□□□□ 0.55
SDHD-209	ENST00000640554	WDR63	Q8IWG1	891 aa		18.51	■□□□□ 0.55
SDHD-209	ENST00000640554	CARMIL3	Q8ND23	1372 aa		18.5	■□□□□ 0.55
SDHD-209	ENST00000640554	MYL6B	P14649	208 aa		18.49	■□□□□ 0.55
SDHD-209	ENST00000640554	BICDL1	Q6ZP65	573 aa		18.49	■□□□□ 0.55
SDHD-209	ENST00000640554	DDX21	Q9NR30	783 aa	Known RBP eCLIP	18.49	■□□□□ 0.55
SDHD-209	ENST00000640554	MAP3K15	Q6ZN16	1313 aa		18.49	■□□□□ 0.55
SDHD-209	ENST00000640554	PDIA6	Q15084	440 aa		18.48	■□□□□ 0.55
SDHD-209	ENST00000640554	DUSP27	Q5VZP5	1158 aa		18.48	■□□□□ 0.55
SDHD-209	ENST00000640554	PELP1	Q8IZL8	1130 aa	Known RBP	18.48	■□□□□ 0.55
SDHD-209	ENST00000640554	DBF4	Q9UBU7	674 aa	Predicted RBP	18.48	■□□□□ 0.55
SDHD-209	ENST00000640554	HDGFL1	Q5TGJ6	251 aa		18.47	■□□□□ 0.55
SDHD-209	ENST00000640554	BRIP1	Q9BX63	1249 aa		18.47	■□□□□ 0.55
SDHD-209	ENST00000640554		A0A0G2JLW4	131 aa		18.46	■□□□□ 0.55
SDHD-209	ENST00000640554	DPEP1	P16444	411 aa		18.46	■□□□□ 0.55
SDHD-209	ENST00000640554	TPTE2	Q6XPS3	522 aa		18.46	■□□□□ 0.55
SDHD-209	ENST00000640554	LRP10	Q7Z4F1	713 aa		18.46	■□□□□ 0.55

Retrieved 100 of 20,778 RNA–protein pairs in 179.9 ms