RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 SENP3-EIF4A1A0A087X0R7 540 aa35.07■■■■□ 3.2
VEGFA-231ENST00000640499 USP16Q9Y5T5 823 aa35.07■■■■□ 3.2
VEGFA-231ENST00000640499 MSL1Q68DK7 614 aa35.06■■■■□ 3.2
VEGFA-231ENST00000640499 SOS1Q07889 1333 aaPredicted RBP35.06■■■■□ 3.2
VEGFA-231ENST00000640499 ADRA2BP18089 450 aa35.05■■■■□ 3.2
VEGFA-231ENST00000640499 EIF4A1P60842 406 aaKnown RBP35.05■■■■□ 3.2
VEGFA-231ENST00000640499 TEX13AQ9BXU3 409 aaPredicted RBP35.05■■■■□ 3.2
VEGFA-231ENST00000640499 C4AP0C0L4 1744 aa35.04■■■■□ 3.2
VEGFA-231ENST00000640499 STARD3NLO95772 234 aa35.03■■■■□ 3.2
VEGFA-231ENST00000640499 SNRPA1P09661 255 aaKnown RBP35.03■■■■□ 3.2
VEGFA-231ENST00000640499 CHL1O00533 1208 aa35.01■■■■□ 3.2
VEGFA-231ENST00000640499 A1BGP04217 495 aa35.01■■■■□ 3.2
VEGFA-231ENST00000640499 FAM9BQ8IZU0 186 aa35.01■■■■□ 3.2
VEGFA-231ENST00000640499 BABAM1Q9NWV8 329 aa35.01■■■■□ 3.2
VEGFA-231ENST00000640499 TSPYL4Q9UJ04 414 aa35.01■■■■□ 3.2
VEGFA-231ENST00000640499 GIGYF1O75420 1035 aaPredicted RBP34.99■■■■□ 3.19
VEGFA-231ENST00000640499 CANXP27824 592 aaKnown RBP34.99■■■■□ 3.19
VEGFA-231ENST00000640499 EIF5P55010 431 aaKnown RBP34.98■■■■□ 3.19
VEGFA-231ENST00000640499 DIEXFQ68CQ4 756 aaKnown RBP34.98■■■■□ 3.19
VEGFA-231ENST00000640499 SRP68Q9UHB9 627 aaKnown RBP34.98■■■■□ 3.19
VEGFA-231ENST00000640499 ARXQ96QS3 562 aa34.97■■■■□ 3.19
VEGFA-231ENST00000640499 GYS1P13807 737 aa34.96■■■■□ 3.19
VEGFA-231ENST00000640499 RFC4P35249 363 aa34.96■■■■□ 3.19
VEGFA-231ENST00000640499 PPP1R1BQ9UD71 204 aaPredicted RBP34.96■■■■□ 3.19
VEGFA-231ENST00000640499 ZNF853P0CG23 659 aa34.95■■■■□ 3.19
VEGFA-231ENST00000640499 PIP4K2AP48426 406 aaPredicted RBP34.94■■■■□ 3.18
VEGFA-231ENST00000640499 LAS1LQ9Y4W2 734 aaKnown RBP34.94■■■■□ 3.18
VEGFA-231ENST00000640499 USP42Q9H9J4 1324 aaKnown RBP34.94■■■■□ 3.18
VEGFA-231ENST00000640499 COL15A1P39059 1388 aa34.94■■■■□ 3.18
VEGFA-231ENST00000640499 NBPF26B4DH59 902 aa34.93■■■■□ 3.18
VEGFA-231ENST00000640499 CCER2I3L3R5 266 aa34.93■■■■□ 3.18
VEGFA-231ENST00000640499 NBPF10Q6P3W6 841 aaKnown RBP34.93■■■■□ 3.18
VEGFA-231ENST00000640499 NBPF15Q8N660 670 aa34.93■■■■□ 3.18
VEGFA-231ENST00000640499 CFAP44Q96MT7 982 aa34.93■■■■□ 3.18
VEGFA-231ENST00000640499 POLD1P28340 1107 aa34.92■■■■□ 3.18
VEGFA-231ENST00000640499 CCDC27Q2M243 656 aa34.92■■■■□ 3.18
VEGFA-231ENST00000640499 LAMB4A4D0S4 1761 aa34.92■■■■□ 3.18
VEGFA-231ENST00000640499 KRT24Q2M2I5 525 aa34.91■■■■□ 3.18
VEGFA-231ENST00000640499 IL6STP40189 918 aaPredicted RBP34.9■■■■□ 3.18
VEGFA-231ENST00000640499 NCBP3Q53F19 620 aaKnown RBP34.9■■■■□ 3.18
VEGFA-231ENST00000640499 WWC1Q8IX03 1113 aa34.9■■■■□ 3.18
VEGFA-231ENST00000640499 FHDC1Q9C0D6 1143 aaPredicted RBP34.9■■■■□ 3.18
VEGFA-231ENST00000640499 USPL1Q5W0Q7 1092 aa34.89■■■■□ 3.18
VEGFA-231ENST00000640499 MIER1Q8N108 512 aa34.89■■■■□ 3.18
VEGFA-231ENST00000640499 NARFQ9UHQ1 456 aa34.89■■■■□ 3.18
VEGFA-231ENST00000640499 FKBP8Q14318 412 aa34.88■■■■□ 3.17
VEGFA-231ENST00000640499 BCL2L12Q9HB09 334 aa34.88■■■■□ 3.17
VEGFA-231ENST00000640499 MBIPQ9NS73 344 aa34.88■■■■□ 3.17
VEGFA-231ENST00000640499 NLGN1Q8N2Q7 840 aa34.87■■■■□ 3.17
VEGFA-231ENST00000640499 IFT57Q9NWB7 429 aa34.86■■■■□ 3.17
VEGFA-231ENST00000640499 MMP10P09238 476 aa34.85■■■■□ 3.17
VEGFA-231ENST00000640499 SYT17Q9BSW7 474 aa34.85■■■■□ 3.17
VEGFA-231ENST00000640499 TBC1D2BQ9UPU7 963 aa34.84■■■■□ 3.17
VEGFA-231ENST00000640499 SALL2Q9Y467 1007 aaPredicted RBP34.84■■■■□ 3.17
VEGFA-231ENST00000640499 ZPR1O75312 459 aa34.82■■■■□ 3.16
VEGFA-231ENST00000640499 ZNF330Q9Y3S2 320 aaPredicted RBP34.82■■■■□ 3.16
VEGFA-231ENST00000640499 A0A087WZG4 1122 aa34.81■■■■□ 3.16
VEGFA-231ENST00000640499 TM4SF1P30408 202 aa34.81■■■■□ 3.16
VEGFA-231ENST00000640499 GNAI1P63096 354 aa34.81■■■■□ 3.16
VEGFA-231ENST00000640499 CALD1Q05682 793 aaKnown RBP34.81■■■■□ 3.16
VEGFA-231ENST00000640499 DDR1Q08345 913 aa34.79■■■■□ 3.16
VEGFA-231ENST00000640499 PDIA6Q15084 440 aa34.79■■■■□ 3.16
VEGFA-231ENST00000640499 CAMTA2O94983 1202 aa34.78■■■■□ 3.16
VEGFA-231ENST00000640499 EIF2S2P20042 333 aaKnown RBP34.77■■■■□ 3.16
VEGFA-231ENST00000640499 LRP10Q7Z4F1 713 aa34.77■■■■□ 3.16
VEGFA-231ENST00000640499 SCN7AQ01118 1682 aa34.76■■■■□ 3.16
VEGFA-231ENST00000640499 DZIP3Q86Y13 1208 aaKnown RBP34.75■■■■□ 3.15
VEGFA-231ENST00000640499 NLGN2Q8NFZ4 835 aa34.75■■■■□ 3.15
VEGFA-231ENST00000640499 NFIXQ14938 502 aa34.74■■■■□ 3.15
VEGFA-231ENST00000640499 PROSER3Q2NL68 480 aa34.74■■■■□ 3.15
VEGFA-231ENST00000640499 KLHL34Q8N239 644 aa34.74■■■■□ 3.15
VEGFA-231ENST00000640499 TSR2Q969E8 191 aaKnown RBP34.74■■■■□ 3.15
VEGFA-231ENST00000640499 BCORQ6W2J9 1755 aa34.74■■■■□ 3.15
VEGFA-231ENST00000640499 NECTIN2Q92692 538 aa34.73■■■■□ 3.15
VEGFA-231ENST00000640499 IL16Q14005 1332 aa34.73■■■■□ 3.15
VEGFA-231ENST00000640499 POLRMTO00411 1230 aaKnown RBP34.72■■■■□ 3.15
VEGFA-231ENST00000640499 MYL6BP14649 208 aa34.72■■■■□ 3.15
VEGFA-231ENST00000640499 DUSP27Q5VZP5 1158 aa34.72■■■■□ 3.15
VEGFA-231ENST00000640499 WDR63Q8IWG1 891 aa34.72■■■■□ 3.15
VEGFA-231ENST00000640499 C8orf58Q8NAV2 365 aa34.72■■■■□ 3.15
VEGFA-231ENST00000640499 ERBB4Q15303 1308 aa34.72■■■■□ 3.15
VEGFA-231ENST00000640499 ANXA1P04083 346 aa34.71■■■■□ 3.15
VEGFA-231ENST00000640499 SPINK5Q9NQ38 1064 aaPredicted RBP34.71■■■■□ 3.15
VEGFA-231ENST00000640499 TBC1D9BQ66K14 1250 aa34.7■■■■□ 3.15
VEGFA-231ENST00000640499 NGEFQ8N5V2 710 aa34.7■■■■□ 3.15
VEGFA-231ENST00000640499 CD2APQ9Y5K6 639 aa34.7■■■■□ 3.15
VEGFA-231ENST00000640499 ZNF521Q96K83 1311 aa34.7■■■■□ 3.15
VEGFA-231ENST00000640499 HOXB7P09629 217 aa34.69■■■■□ 3.14
VEGFA-231ENST00000640499 TTLL7Q6ZT98 887 aa34.69■■■■□ 3.14
VEGFA-231ENST00000640499 PARP3Q9Y6F1 533 aa34.69■■■■□ 3.14
VEGFA-231ENST00000640499 TSPYL6Q8N831 410 aa34.68■■■■□ 3.14
VEGFA-231ENST00000640499 KIF13BQ9NQT8 1826 aa34.67■■■■□ 3.14
VEGFA-231ENST00000640499 ELL2O00472 640 aaPredicted RBP34.67■■■■□ 3.14
VEGFA-231ENST00000640499 NPM2Q86SE8 214 aaKnown RBP34.67■■■■□ 3.14
VEGFA-231ENST00000640499 HLFQ16534 295 aa34.66■■■■□ 3.14
VEGFA-231ENST00000640499 C10orf71Q711Q0 1435 aa34.65■■■■□ 3.14
VEGFA-231ENST00000640499 AFDNP55196 1824 aaKnown RBP34.65■■■■□ 3.14
VEGFA-231ENST00000640499 BICDL1Q6ZP65 573 aa34.65■■■■□ 3.14
VEGFA-231ENST00000640499 NRXN2Q9P2S2 1712 aa34.64■■■■□ 3.14
VEGFA-231ENST00000640499 HDGFL1Q5TGJ6 251 aa34.64■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms