RNA–Protein interactions for RNA: ENST00000640482.1

VEGFA-230, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,065 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-230ENST00000640482 C10orf71Q711Q0 1435 aa33.49■■■□□ 2.95
VEGFA-230ENST00000640482 MCM10Q7L590 875 aa33.49■■■□□ 2.95
VEGFA-230ENST00000640482 GOLGB1Q14789 3259 aaKnown RBP33.48■■■□□ 2.95
VEGFA-230ENST00000640482 TGFB2P61812 414 aa33.48■■■□□ 2.95
VEGFA-230ENST00000640482 ZNF784Q8NCA9 323 aaPredicted RBP33.48■■■□□ 2.95
VEGFA-230ENST00000640482 PNNQ9H307 717 aaKnown RBP33.48■■■□□ 2.95
VEGFA-230ENST00000640482 CANXP27824 592 aaKnown RBP33.47■■■□□ 2.95
VEGFA-230ENST00000640482 USPL1Q5W0Q7 1092 aa33.46■■■□□ 2.95
VEGFA-230ENST00000640482 NARFQ9UHQ1 456 aa33.46■■■□□ 2.95
VEGFA-230ENST00000640482 KIF13BQ9NQT8 1826 aa33.46■■■□□ 2.95
VEGFA-230ENST00000640482 PXDNLA1KZ92 1463 aa33.44■■■□□ 2.94
VEGFA-230ENST00000640482 DCTN1Q14203 1278 aa33.43■■■□□ 2.94
VEGFA-230ENST00000640482 PLEKHF1Q96S99 279 aa33.43■■■□□ 2.94
VEGFA-230ENST00000640482 A0A087WZG4 1122 aa33.42■■■□□ 2.94
VEGFA-230ENST00000640482 KCNQ3O43525 872 aa33.42■■■□□ 2.94
VEGFA-230ENST00000640482 WWC3Q9ULE0 1092 aa33.42■■■□□ 2.94
VEGFA-230ENST00000640482 DDR1Q08345 913 aa33.41■■■□□ 2.94
VEGFA-230ENST00000640482 MYBBP1AQ9BQG0 1328 aaKnown RBP33.4■■■□□ 2.94
VEGFA-230ENST00000640482 MAPK8IP3Q9UPT6 1336 aa33.4■■■□□ 2.94
VEGFA-230ENST00000640482 TM4SF1P30408 202 aa33.4■■■□□ 2.94
VEGFA-230ENST00000640482 EIF5P55010 431 aaKnown RBP33.4■■■□□ 2.94
VEGFA-230ENST00000640482 A0A0G2JLW4 131 aa33.38■■■□□ 2.93
VEGFA-230ENST00000640482 POLRMTO00411 1230 aaKnown RBP33.38■■■□□ 2.93
VEGFA-230ENST00000640482 NFE2L2Q16236 605 aa33.38■■■□□ 2.93
VEGFA-230ENST00000640482 KIAA1551Q9HCM1 1747 aa33.37■■■□□ 2.93
VEGFA-230ENST00000640482 IL6STP40189 918 aaPredicted RBP33.37■■■□□ 2.93
VEGFA-230ENST00000640482 TAF7Q15545 349 aaPredicted RBP33.37■■■□□ 2.93
VEGFA-230ENST00000640482 NPM2Q86SE8 214 aaKnown RBP33.36■■■□□ 2.93
VEGFA-230ENST00000640482 SNRPA1P09661 255 aaKnown RBP33.35■■■□□ 2.93
VEGFA-230ENST00000640482 DPEP1P16444 411 aa33.35■■■□□ 2.93
VEGFA-230ENST00000640482 NFIXQ14938 502 aa33.35■■■□□ 2.93
VEGFA-230ENST00000640482 BCL2L12Q9HB09 334 aa33.35■■■□□ 2.93
VEGFA-230ENST00000640482 ZNF330Q9Y3S2 320 aaPredicted RBP33.35■■■□□ 2.93
VEGFA-230ENST00000640482 N4BP2Q86UW6 1770 aaPredicted RBP33.34■■■□□ 2.93
VEGFA-230ENST00000640482 A1BGP04217 495 aa33.34■■■□□ 2.93
VEGFA-230ENST00000640482 PNISRQ8TF01 805 aaKnown RBP33.32■■■□□ 2.92
VEGFA-230ENST00000640482 BCS1LQ9Y276 419 aa33.32■■■□□ 2.92
VEGFA-230ENST00000640482 USP16Q9Y5T5 823 aa33.32■■■□□ 2.92
VEGFA-230ENST00000640482 DLG5Q8TDM6 1919 aa33.31■■■□□ 2.92
VEGFA-230ENST00000640482 ZEB1P37275 1124 aaPredicted RBP33.3■■■□□ 2.92
VEGFA-230ENST00000640482 PRAMEF22A3QJZ6 481 aa33.28■■■□□ 2.92
VEGFA-230ENST00000640482 TBC1D2BQ9UPU7 963 aa33.28■■■□□ 2.92
VEGFA-230ENST00000640482 SERPINB2P05120 415 aa33.27■■■□□ 2.92
VEGFA-230ENST00000640482 MIS18AQ9NYP9 233 aa33.27■■■□□ 2.92
VEGFA-230ENST00000640482 PIM2Q9P1W9 311 aa33.27■■■□□ 2.92
VEGFA-230ENST00000640482 KCNA3P22001 575 aa33.26■■■□□ 2.91
VEGFA-230ENST00000640482 SCN7AQ01118 1682 aa33.26■■■□□ 2.91
VEGFA-230ENST00000640482 BICDL1Q6ZP65 573 aa33.25■■■□□ 2.91
VEGFA-230ENST00000640482 NRXN2Q9P2S2 1712 aa33.24■■■□□ 2.91
VEGFA-230ENST00000640482 DZIP3Q86Y13 1208 aaKnown RBP33.23■■■□□ 2.91
VEGFA-230ENST00000640482 THUMPD2Q9BTF0 503 aaKnown RBP33.23■■■□□ 2.91
VEGFA-230ENST00000640482 WDR43Q15061 677 aaKnown RBP eCLIP33.22■■■□□ 2.918e-10■□□□□ 9.2
VEGFA-230ENST00000640482 TBC1D9BQ66K14 1250 aa33.22■■■□□ 2.91
VEGFA-230ENST00000640482 PRKRIP1Q9H875 184 aaPredicted RBP33.22■■■□□ 2.91
VEGFA-230ENST00000640482 AFDNP55196 1824 aaKnown RBP33.22■■■□□ 2.91
VEGFA-230ENST00000640482 BRCA1P38398 1863 aaKnown RBP33.22■■■□□ 2.91
VEGFA-230ENST00000640482 CAMTA2O94983 1202 aa33.21■■■□□ 2.91
VEGFA-230ENST00000640482 CHRNA5P30532 468 aa33.21■■■□□ 2.91
VEGFA-230ENST00000640482 PIP4K2AP48426 406 aaPredicted RBP33.21■■■□□ 2.91
VEGFA-230ENST00000640482 RIPK4P57078 832 aa33.21■■■□□ 2.91
VEGFA-230ENST00000640482 DALRD3Q5D0E6 543 aaKnown RBP33.21■■■□□ 2.91
VEGFA-230ENST00000640482 KDM3BQ7LBC6 1761 aa33.2■■■□□ 2.91
VEGFA-230ENST00000640482 LMOD3Q0VAK6 560 aa33.2■■■□□ 2.91
VEGFA-230ENST00000640482 ADCY9O60503 1353 aa33.2■■■□□ 2.9
VEGFA-230ENST00000640482 ATP10DQ9P241 1426 aa33.19■■■□□ 2.9
VEGFA-230ENST00000640482 ARHGAP27Q6ZUM4 889 aa33.19■■■□□ 2.9
VEGFA-230ENST00000640482 CARMIL3Q8ND23 1372 aa33.19■■■□□ 2.9
VEGFA-230ENST00000640482 TMPOP42166 694 aaKnown RBP33.18■■■□□ 2.9
VEGFA-230ENST00000640482 EIF4A1P60842 406 aaKnown RBP33.17■■■□□ 2.9
VEGFA-230ENST00000640482 SETDB2Q96T68 719 aa33.17■■■□□ 2.9
VEGFA-230ENST00000640482 ZNF652Q9Y2D9 606 aa33.16■■■□□ 2.9
VEGFA-230ENST00000640482 LAMB4A4D0S4 1761 aa33.16■■■□□ 2.9
VEGFA-230ENST00000640482 NBPF26B4DH59 902 aa33.15■■■□□ 2.9
VEGFA-230ENST00000640482 GIGYF1O75420 1035 aaPredicted RBP33.15■■■□□ 2.9
VEGFA-230ENST00000640482 NBPF10Q6P3W6 841 aaKnown RBP33.15■■■□□ 2.9
VEGFA-230ENST00000640482 BCORQ6W2J9 1755 aa33.15■■■□□ 2.9
VEGFA-230ENST00000640482 NBPF15Q8N660 670 aa33.15■■■□□ 2.9
VEGFA-230ENST00000640482 ARFGEF1Q9Y6D6 1849 aa33.14■■■□□ 2.9
VEGFA-230ENST00000640482 CLEC4GQ6UXB4 293 aa33.14■■■□□ 2.9
VEGFA-230ENST00000640482 CCDC146Q8IYE0 955 aa33.14■■■□□ 2.9
VEGFA-230ENST00000640482 RUNDC1Q96C34 613 aa33.14■■■□□ 2.9
VEGFA-230ENST00000640482 TSPYL4Q9UJ04 414 aa33.14■■■□□ 2.9
VEGFA-230ENST00000640482 H0YIN7 160 aa33.11■■■□□ 2.89
VEGFA-230ENST00000640482 NPHP1O15259 732 aa33.11■■■□□ 2.89
VEGFA-230ENST00000640482 C2CD5Q86YS7 1000 aa33.11■■■□□ 2.89
VEGFA-230ENST00000640482 BABAM1Q9NWV8 329 aa33.11■■■□□ 2.89
VEGFA-230ENST00000640482 RGL2O15211 777 aa33.1■■■□□ 2.89
VEGFA-230ENST00000640482 PRR5LQ6MZQ0 368 aa33.1■■■□□ 2.89
VEGFA-230ENST00000640482 BRIP1Q9BX63 1249 aa33.1■■■□□ 2.89
VEGFA-230ENST00000640482 GPBP1L1Q9HC44 474 aaPredicted RBP33.1■■■□□ 2.89
VEGFA-230ENST00000640482 ADAMTS8Q9UP79 889 aa33.1■■■□□ 2.89
VEGFA-230ENST00000640482 PDZRN3Q9UPQ7 1066 aa33.1■■■□□ 2.89
VEGFA-230ENST00000640482 RRP7AQ9Y3A4 280 aaKnown RBP33.1■■■□□ 2.89
VEGFA-230ENST00000640482 PDE6BP35913 854 aa33.09■■■□□ 2.89
VEGFA-230ENST00000640482 CNBD1Q8NA66 436 aa33.09■■■□□ 2.89
VEGFA-230ENST00000640482 C1QTNF8P60827 252 aa33.08■■■□□ 2.89
VEGFA-230ENST00000640482 NEUROD2Q15784 382 aa33.08■■■□□ 2.89
VEGFA-230ENST00000640482 ST5P78524 1137 aa33.07■■■□□ 2.88
VEGFA-230ENST00000640482 TTLL6Q8N841 843 aa33.06■■■□□ 2.88
VEGFA-230ENST00000640482 ZNF526Q8TF50 670 aaPredicted RBP33.06■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms