RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 RIC3Q7Z5B4 369 aa12.33□□□□□ -0.44
VTA1-205ENST00000620996 NUTM2AQ8IVF1 878 aaPredicted RBP12.33□□□□□ -0.44
VTA1-205ENST00000620996 OTUD7AQ8TE49 926 aaPredicted RBP12.33□□□□□ -0.44
VTA1-205ENST00000620996 PCDH11XQ9BZA7 1347 aa12.33□□□□□ -0.44
VTA1-205ENST00000620996 PCDH11YQ9BZA8 1340 aa12.33□□□□□ -0.44
VTA1-205ENST00000620996 PNMA6EA0A0J9YXQ4 647 aa12.32□□□□□ -0.44
VTA1-205ENST00000620996 PTCD1O75127 700 aaKnown RBP12.32□□□□□ -0.44
VTA1-205ENST00000620996 USP44Q9H0E7 712 aa12.32□□□□□ -0.44
VTA1-205ENST00000620996 COL5A2P05997 1499 aaPredicted RBP12.32□□□□□ -0.44
VTA1-205ENST00000620996 COL18A1P39060 1754 aa12.32□□□□□ -0.44
VTA1-205ENST00000620996 DDX58O95786 925 aaKnown RBP12.31□□□□□ -0.44
VTA1-205ENST00000620996 FMNL2Q96PY5 1086 aa12.31□□□□□ -0.44
VTA1-205ENST00000620996 CWF19L2Q2TBE0 894 aaKnown RBP12.31□□□□□ -0.44
VTA1-205ENST00000620996 CARD10Q9BWT7 1032 aa12.31□□□□□ -0.44
VTA1-205ENST00000620996 ZMYND15Q9H091 742 aa12.31□□□□□ -0.44
VTA1-205ENST00000620996 HYPKQ9NX55 129 aa12.31□□□□□ -0.44
VTA1-205ENST00000620996 ZNF330Q9Y3S2 320 aaPredicted RBP12.31□□□□□ -0.44
VTA1-205ENST00000620996 OVOS2A0A0G2JMS6 1433 aa12.31□□□□□ -0.44
VTA1-205ENST00000620996 NBPF7P0C2Y1 421 aaPredicted RBP12.31□□□□□ -0.44
VTA1-205ENST00000620996 OS9Q13438 667 aaPredicted RBP12.3□□□□□ -0.44
VTA1-205ENST00000620996 USP16Q9Y5T5 823 aa12.3□□□□□ -0.44
VTA1-205ENST00000620996 SNRPA1P09661 255 aaKnown RBP12.3□□□□□ -0.44
VTA1-205ENST00000620996 XAGE3Q8WTP9 111 aa12.3□□□□□ -0.44
VTA1-205ENST00000620996 BRPF3Q9ULD4 1205 aa12.3□□□□□ -0.44
VTA1-205ENST00000620996 KDM3BQ7LBC6 1761 aa12.3□□□□□ -0.44
VTA1-205ENST00000620996 SRGAP3O43295 1099 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 BEND3Q5T5X7 828 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 TSHZ3Q63HK5 1081 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 ARXQ96QS3 562 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 DDX21Q9NR30 783 aaKnown RBP eCLIP12.29□□□□□ -0.44
VTA1-205ENST00000620996 CCDC9Q9Y3X0 531 aaKnown RBP12.29□□□□□ -0.44
VTA1-205ENST00000620996 KSR2Q6VAB6 950 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 COPS6Q7L5N1 327 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 PLEKHM2Q8IWE5 1019 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 SYTL4Q96C24 671 aaPredicted RBP12.29□□□□□ -0.44
VTA1-205ENST00000620996 ADCY9O60503 1353 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 SURF6O75683 361 aaKnown RBP12.29□□□□□ -0.44
VTA1-205ENST00000620996 ATP8B2P98198 1209 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 BMP2KLQ5H9B9 411 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 PPP1R42Q7Z4L9 355 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 C22orf23Q9BZE7 217 aa12.29□□□□□ -0.44
VTA1-205ENST00000620996 IL1RAPL2Q9NP60 686 aa12.28□□□□□ -0.44
VTA1-205ENST00000620996 NEXNQ0ZGT2 675 aa12.28□□□□□ -0.44
VTA1-205ENST00000620996 LRRCC1Q9C099 1032 aa12.28□□□□□ -0.44
VTA1-205ENST00000620996 CRYBG1Q9Y4K1 1723 aa12.28□□□□□ -0.44
VTA1-205ENST00000620996 MYD88Q99836 296 aa12.28□□□□□ -0.44
VTA1-205ENST00000620996 JARID2Q92833 1246 aaPredicted RBP12.27□□□□□ -0.45
VTA1-205ENST00000620996 TMOD3Q9NYL9 352 aa12.27□□□□□ -0.45
VTA1-205ENST00000620996 VIRMAQ69YN4 1812 aaKnown RBP12.26□□□□□ -0.45
VTA1-205ENST00000620996 GSPT1P15170 499 aaKnown RBP12.26□□□□□ -0.45
VTA1-205ENST00000620996 TBC1D32Q96NH3 1257 aa12.26□□□□□ -0.45
VTA1-205ENST00000620996 BECN1Q14457 450 aa12.26□□□□□ -0.45
VTA1-205ENST00000620996 TTC22Q5TAA0 569 aa12.26□□□□□ -0.45
VTA1-205ENST00000620996 TBC1D9Q6ZT07 1266 aa12.26□□□□□ -0.45
VTA1-205ENST00000620996 SPRYD3Q8NCJ5 442 aa12.26□□□□□ -0.45
VTA1-205ENST00000620996 ABCC6O95255 1503 aa12.26□□□□□ -0.45
VTA1-205ENST00000620996 CDC45O75419 566 aa12.26□□□□□ -0.45
VTA1-205ENST00000620996 PXDNLA1KZ92 1463 aa12.25□□□□□ -0.45
VTA1-205ENST00000620996 PDIA6Q15084 440 aa12.25□□□□□ -0.45
VTA1-205ENST00000620996 RBM42Q9BTD8 480 aaKnown RBP12.25□□□□□ -0.45
VTA1-205ENST00000620996 ROBO1Q9Y6N7 1651 aa12.25□□□□□ -0.45
VTA1-205ENST00000620996 TRIM6-TRIM34B2RNG4 842 aa12.25□□□□□ -0.45
VTA1-205ENST00000620996 ATP5J2-PTCD1G3V325 749 aa12.25□□□□□ -0.45
VTA1-205ENST00000620996 HEG1Q9ULI3 1381 aa12.25□□□□□ -0.45
VTA1-205ENST00000620996 ANKRD13DQ6ZTN6 518 aa12.24□□□□□ -0.45
VTA1-205ENST00000620996 NUTM1Q86Y26 1132 aa12.24□□□□□ -0.45
VTA1-205ENST00000620996 ERVV-2B6SEH9 535 aa12.24□□□□□ -0.45
VTA1-205ENST00000620996 LINS1Q8NG48 757 aa12.24□□□□□ -0.45
VTA1-205ENST00000620996 RILPL2Q969X0 211 aa12.24□□□□□ -0.45
VTA1-205ENST00000620996 NHSL1Q5SYE7 1610 aa12.24□□□□□ -0.45
VTA1-205ENST00000620996 SCN11AQ9UI33 1791 aa12.24□□□□□ -0.45
VTA1-205ENST00000620996 ALDH1L1O75891 902 aa12.24□□□□□ -0.45
VTA1-205ENST00000620996 CASC1Q6TDU7 716 aa12.24□□□□□ -0.45
VTA1-205ENST00000620996 UBAP1LF5GYI3 381 aa12.23□□□□□ -0.45
VTA1-205ENST00000620996 GRM8O00222 908 aa12.23□□□□□ -0.45
VTA1-205ENST00000620996 A1BGP04217 495 aa12.23□□□□□ -0.45
VTA1-205ENST00000620996 KAT6BQ8WYB5 2073 aa12.23□□□□□ -0.45
VTA1-205ENST00000620996 SLKQ9H2G2 1235 aaPredicted RBP12.23□□□□□ -0.45
VTA1-205ENST00000620996 CACNA1FO60840 1977 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 EXOC5O00471 708 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 TOM1O60784 492 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 SDSP20132 328 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 PA2G4Q9UQ80 394 aaKnown RBP12.22□□□□□ -0.45
VTA1-205ENST00000620996 ABCA3Q99758 1704 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 MX1P20591 662 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 PDE1AP54750 535 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 AEBP2Q6ZN18 517 aaPredicted RBP12.22□□□□□ -0.45
VTA1-205ENST00000620996 SUCLG2Q96I99 432 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 SIL1Q9H173 461 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 ZBTB3Q9H5J0 574 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 MAP4K4O95819 1239 aaPredicted RBP12.22□□□□□ -0.45
VTA1-205ENST00000620996 SSH3Q8TE77 659 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 CHMP3Q9Y3E7 222 aa12.22□□□□□ -0.45
VTA1-205ENST00000620996 PARP4Q9UKK3 1724 aaKnown RBP12.22□□□□□ -0.45
VTA1-205ENST00000620996 GLIPR1L2Q4G1C9 344 aa12.21□□□□□ -0.45
VTA1-205ENST00000620996 ASAP1Q9ULH1 1129 aa12.21□□□□□ -0.45
VTA1-205ENST00000620996 HDAC5Q9UQL6 1122 aa12.21□□□□□ -0.45
VTA1-205ENST00000620996 SIPA1L3O60292 1781 aaPredicted RBP12.21□□□□□ -0.45
VTA1-205ENST00000620996 IBTKQ9P2D0 1353 aaPredicted RBP12.21□□□□□ -0.45
VTA1-205ENST00000620996 IGKV5-2P06315 115 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms