RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 TAF1LQ8IZX4 1826 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 CASZ1Q86V15 1759 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 UBR2Q8IWV8 1755 aa6.87□□□□□ -1.31
SHMT1-211ENST00000618902 CICQ96RK0 1608 aaPredicted RBP6.87□□□□□ -1.31
SHMT1-211ENST00000618902 HEG1Q9ULI3 1381 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 PNPLA7Q6ZV29 1317 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 ZNF521Q96K83 1311 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 BTBD11A6QL63 1104 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 CHL1O00533 1208 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 STARD3NLO95772 234 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 PTGER2P43116 358 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 EIF4A1P60842 406 aaKnown RBP6.86□□□□□ -1.31
SHMT1-211ENST00000618902 LMOD3Q0VAK6 560 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 TTC5Q8N0Z6 440 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 RTCBQ9Y3I0 505 aaKnown RBP6.86□□□□□ -1.31
SHMT1-211ENST00000618902 CD2APQ9Y5K6 639 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 TJP1Q07157 1748 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 COL24A1Q17RW2 1714 aa6.86□□□□□ -1.31
SHMT1-211ENST00000618902 TUBGCP6Q96RT7 1819 aa6.85□□□□□ -1.31
SHMT1-211ENST00000618902 KDM3BQ7LBC6 1761 aa6.85□□□□□ -1.31
SHMT1-211ENST00000618902 C5P01031 1676 aa6.85□□□□□ -1.31
SHMT1-211ENST00000618902 RPS6KA4O75676 772 aa6.85□□□□□ -1.31
SHMT1-211ENST00000618902 CYP19A1P11511 503 aaPredicted RBP6.85□□□□□ -1.31
SHMT1-211ENST00000618902 CCDC27Q2M243 656 aa6.85□□□□□ -1.31
SHMT1-211ENST00000618902 TRAPPC3LQ5T215 181 aa6.85□□□□□ -1.31
SHMT1-211ENST00000618902 INTS5Q6P9B9 1019 aaKnown RBP6.85□□□□□ -1.31
SHMT1-211ENST00000618902 COL5A3P25940 1745 aaPredicted RBP6.84□□□□□ -1.31
SHMT1-211ENST00000618902 A0A087WZG4 1122 aa6.84□□□□□ -1.31
SHMT1-211ENST00000618902 GRIN3BO60391 1043 aa6.84□□□□□ -1.31
SHMT1-211ENST00000618902 NGEFQ8N5V2 710 aa6.84□□□□□ -1.31
SHMT1-211ENST00000618902 FMNL2Q96PY5 1086 aa6.84□□□□□ -1.31
SHMT1-211ENST00000618902 MBIPQ9NS73 344 aa6.84□□□□□ -1.31
SHMT1-211ENST00000618902 TSPYL4Q9UJ04 414 aa6.84□□□□□ -1.31
SHMT1-211ENST00000618902 PDZRN3Q9UPQ7 1066 aa6.84□□□□□ -1.31
SHMT1-211ENST00000618902 USP16Q9Y5T5 823 aa6.84□□□□□ -1.31
SHMT1-211ENST00000618902 C4BP0C0L5 1744 aa6.84□□□□□ -1.31
SHMT1-211ENST00000618902 UBR3Q6ZT12 1888 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.83□□□□□ -1.32
SHMT1-211ENST00000618902 NBPF26B4DH59 902 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 GIGYF1O75420 1035 aaPredicted RBP6.83□□□□□ -1.32
SHMT1-211ENST00000618902 ZBTB7AO95365 584 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 A1BGP04217 495 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 NEFLP07196 543 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 RFC4P35249 363 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 CRKLP46109 303 aaKnown RBP6.83□□□□□ -1.32
SHMT1-211ENST00000618902 PIP4K2AP48426 406 aaPredicted RBP6.83□□□□□ -1.32
SHMT1-211ENST00000618902 CALD1Q05682 793 aaKnown RBP6.83□□□□□ -1.32
SHMT1-211ENST00000618902 NBPF10Q6P3W6 841 aaKnown RBP6.83□□□□□ -1.32
SHMT1-211ENST00000618902 NPM2Q86SE8 214 aaKnown RBP6.83□□□□□ -1.32
SHMT1-211ENST00000618902 COL23A1Q86Y22 540 aaPredicted RBP6.83□□□□□ -1.32
SHMT1-211ENST00000618902 NBPF15Q8N660 670 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 C8orf58Q8NAV2 365 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 TSR2Q969E8 191 aaKnown RBP6.83□□□□□ -1.32
SHMT1-211ENST00000618902 CFAP44Q96MT7 982 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 SYT17Q9BSW7 474 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 IFT57Q9NWB7 429 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 ZBTB1Q9Y2K1 713 aa6.83□□□□□ -1.32
SHMT1-211ENST00000618902 LAS1LQ9Y4W2 734 aaKnown RBP6.83□□□□□ -1.32
SHMT1-211ENST00000618902 GNPATO15228 680 aa6.82□□□□□ -1.32
SHMT1-211ENST00000618902 SNRPA1P09661 255 aaKnown RBP6.82□□□□□ -1.32
SHMT1-211ENST00000618902 TGFB2P61812 414 aa6.82□□□□□ -1.32
SHMT1-211ENST00000618902 PROSER3Q2NL68 480 aa6.82□□□□□ -1.32
SHMT1-211ENST00000618902 CLEC4GQ6UXB4 293 aa6.82□□□□□ -1.32
SHMT1-211ENST00000618902 WDR63Q8IWG1 891 aa6.82□□□□□ -1.32
SHMT1-211ENST00000618902 TSPYL6Q8N831 410 aa6.82□□□□□ -1.32
SHMT1-211ENST00000618902 CDCA7LQ96GN5 454 aa6.82□□□□□ -1.32
SHMT1-211ENST00000618902 CCDC87Q9NVE4 849 aa6.82□□□□□ -1.32
SHMT1-211ENST00000618902 SUPT16HQ9Y5B9 1047 aaKnown RBP6.82□□□□□ -1.32
SHMT1-211ENST00000618902 SOS1Q07889 1333 aaPredicted RBP6.81□□□□□ -1.32
SHMT1-211ENST00000618902 IL16Q14005 1332 aa6.81□□□□□ -1.32
SHMT1-211ENST00000618902 ERBB4Q15303 1308 aa6.81□□□□□ -1.32
SHMT1-211ENST00000618902 FANCIQ9NVI1 1328 aa6.81□□□□□ -1.32
SHMT1-211ENST00000618902 MSH5O43196 834 aa6.81□□□□□ -1.32
SHMT1-211ENST00000618902 ZPR1O75312 459 aa6.81□□□□□ -1.32
SHMT1-211ENST00000618902 ANXA1P04083 346 aa6.81□□□□□ -1.32
SHMT1-211ENST00000618902 IL6STP40189 918 aaPredicted RBP6.81□□□□□ -1.32
SHMT1-211ENST00000618902 EIF5P55010 431 aaKnown RBP6.81□□□□□ -1.32
SHMT1-211ENST00000618902 GNAI1P63096 354 aa6.81□□□□□ -1.32
SHMT1-211ENST00000618902 PDIA6Q15084 440 aa6.81□□□□□ -1.32
SHMT1-211ENST00000618902 DUSP27Q5VZP5 1158 aa6.81□□□□□ -1.32
SHMT1-211ENST00000618902 LRP10Q7Z4F1 713 aa6.81□□□□□ -1.32
SHMT1-211ENST00000618902 BCL2L12Q9HB09 334 aa6.81□□□□□ -1.32
SHMT1-211ENST00000618902 SRP68Q9UHB9 627 aaKnown RBP6.81□□□□□ -1.32
SHMT1-211ENST00000618902 ATF5Q9Y2D1 282 aaPredicted RBP6.81□□□□□ -1.32
SHMT1-211ENST00000618902 ELL2O00472 640 aaPredicted RBP6.8□□□□□ -1.32
SHMT1-211ENST00000618902 PHF14O94880 888 aa6.8□□□□□ -1.32
SHMT1-211ENST00000618902 CANXP27824 592 aaKnown RBP6.8□□□□□ -1.32
SHMT1-211ENST00000618902 TRMT2AQ8IZ69 625 aaKnown RBP6.8□□□□□ -1.32
SHMT1-211ENST00000618902 NECTIN2Q92692 538 aa6.8□□□□□ -1.32
SHMT1-211ENST00000618902 ARHGEF1Q92888 912 aaKnown RBP6.8□□□□□ -1.32
SHMT1-211ENST00000618902 FHDC1Q9C0D6 1143 aaPredicted RBP6.8□□□□□ -1.32
SHMT1-211ENST00000618902 NARFQ9UHQ1 456 aa6.8□□□□□ -1.32
SHMT1-211ENST00000618902 USP42Q9H9J4 1324 aaKnown RBP6.79□□□□□ -1.32
SHMT1-211ENST00000618902 HOXB7P09629 217 aa6.79□□□□□ -1.32
SHMT1-211ENST00000618902 GYS1P13807 737 aa6.79□□□□□ -1.32
SHMT1-211ENST00000618902 EXOSC9Q06265 439 aaKnown RBP6.79□□□□□ -1.32
SHMT1-211ENST00000618902 SLFN5Q08AF3 891 aa6.79□□□□□ -1.32
SHMT1-211ENST00000618902 MSL1Q68DK7 614 aa6.79□□□□□ -1.32
SHMT1-211ENST00000618902 TTLL7Q6ZT98 887 aa6.79□□□□□ -1.32
SHMT1-211ENST00000618902 ZNF652Q9Y2D9 606 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms