RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 INTS4Q96HW7 963 aaKnown RBP15□□□□□ -0.01
LIG1-221ENST00000613670 CCDC8Q9H0W5 538 aaPredicted RBP15□□□□□ -0.01
LIG1-221ENST00000613670 A0A0U1RQG5 324 aaPredicted RBP15□□□□□ -0.01
LIG1-221ENST00000613670 PI4KAP2A4QPH2 592 aa15□□□□□ -0.01
LIG1-221ENST00000613670 PDCP20941 246 aa15□□□□□ -0.01
LIG1-221ENST00000613670 PSMA5P28066 241 aa15□□□□□ -0.01
LIG1-221ENST00000613670 PI4KAP1Q8N8J0 262 aa15□□□□□ -0.01
LIG1-221ENST00000613670 BOLA2Q9H3K6 86 aa15□□□□□ -0.01
LIG1-221ENST00000613670 IGSF3O75054 1194 aa14.99□□□□□ -0.01
LIG1-221ENST00000613670 GLRX3O76003 335 aaKnown RBP14.99□□□□□ -0.01
LIG1-221ENST00000613670 FILIP1Q7Z7B0 1213 aa14.99□□□□□ -0.01
LIG1-221ENST00000613670 FMNL2Q96PY5 1086 aa14.99□□□□□ -0.01
LIG1-221ENST00000613670 PHAXQ9H814 394 aaKnown RBP14.99□□□□□ -0.01
LIG1-221ENST00000613670 F13A1P00488 732 aa14.99□□□□□ -0.01
LIG1-221ENST00000613670 DNAJC2Q99543 621 aaKnown RBP14.98□□□□□ -0.01
LIG1-221ENST00000613670 POGZQ7Z3K3 1410 aa14.98□□□□□ -0.01
LIG1-221ENST00000613670 TPM3P06753 285 aa14.98□□□□□ -0.01
LIG1-221ENST00000613670 CDK11BP21127 795 aaKnown RBP14.98□□□□□ -0.01
LIG1-221ENST00000613670 UVSSAQ2YD98 709 aa14.98□□□□□ -0.01
LIG1-221ENST00000613670 RIC3Q7Z5B4 369 aa14.98□□□□□ -0.01
LIG1-221ENST00000613670 GNL2Q13823 731 aaKnown RBP14.98□□□□□ -0.01
LIG1-221ENST00000613670 IBTKQ9P2D0 1353 aaPredicted RBP14.97□□□□□ -0.01
LIG1-221ENST00000613670 CCDC73Q6ZRK6 1079 aa14.97□□□□□ -0.01
LIG1-221ENST00000613670 JARID2Q92833 1246 aaPredicted RBP14.97□□□□□ -0.01
LIG1-221ENST00000613670 ZSCAN31Q96LW9 406 aaPredicted RBP14.97□□□□□ -0.01
LIG1-221ENST00000613670 CEP152O94986 1710 aa14.97□□□□□ -0.01
LIG1-221ENST00000613670 SHROOM2Q13796 1616 aa14.97□□□□□ -0.01
LIG1-221ENST00000613670 NEXNQ0ZGT2 675 aa14.97□□□□□ -0.01
LIG1-221ENST00000613670 NCOA3Q9Y6Q9 1424 aa14.97□□□□□ -0.01
LIG1-221ENST00000613670 ZCCHC11Q5TAX3 1644 aaKnown RBP14.96□□□□□ -0.01
LIG1-221ENST00000613670 FAM135BQ49AJ0 1406 aa14.96□□□□□ -0.01
LIG1-221ENST00000613670 CCDC112Q8NEF3 446 aa14.96□□□□□ -0.01
LIG1-221ENST00000613670 DNAAF4Q8WXU2 420 aa14.96□□□□□ -0.01
LIG1-221ENST00000613670 SDF4Q9BRK5 362 aa14.96□□□□□ -0.01
LIG1-221ENST00000613670 PA2G4Q9UQ80 394 aaKnown RBP14.96□□□□□ -0.01
LIG1-221ENST00000613670 PTCH1Q13635 1447 aa14.96□□□□□ -0.01
LIG1-221ENST00000613670 EFCAB6Q5THR3 1501 aa14.96□□□□□ -0.01
LIG1-221ENST00000613670 PRIMPOLQ96LW4 560 aa14.96□□□□□ -0.01
LIG1-221ENST00000613670 EYA1Q99502 592 aa14.96□□□□□ -0.01
LIG1-221ENST00000613670 KDM4AO75164 1064 aa14.96□□□□□ -0.02
LIG1-221ENST00000613670 ZNF530Q6P9A1 599 aaPredicted RBP14.96□□□□□ -0.02
LIG1-221ENST00000613670 CCDC186Q7Z3E2 898 aa14.96□□□□□ -0.02
LIG1-221ENST00000613670 NEUROD6Q96NK8 337 aa14.96□□□□□ -0.02
LIG1-221ENST00000613670 GORABQ5T7V8 394 aa14.95□□□□□ -0.02
LIG1-221ENST00000613670 SNX14Q9Y5W7 946 aa14.95□□□□□ -0.02
LIG1-221ENST00000613670 MAP3K19Q56UN5 1328 aa14.95□□□□□ -0.02
LIG1-221ENST00000613670 PIK3R4Q99570 1358 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 CSB-PGBD3P0DP91 1061 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 PTGS1P23219 599 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 LUZP1Q86V48 1076 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 ECHDC1Q9NTX5 307 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 DACT1Q9NYF0 836 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 PPP6R1Q9UPN7 881 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 DDX58O95786 925 aaKnown RBP14.94□□□□□ -0.02
LIG1-221ENST00000613670 CYP2E1P05181 493 aaPredicted RBP14.94□□□□□ -0.02
LIG1-221ENST00000613670 TERF1P54274 439 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 CLEC17AQ6ZS10 378 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 CHPF2Q9P2E5 772 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 SOS1Q07889 1333 aaPredicted RBP14.94□□□□□ -0.02
LIG1-221ENST00000613670 TULP4Q9NRJ4 1543 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 A0A0G2JS52 829 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 BTBD11A6QL63 1104 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 MPRIPQ6WCQ1 1025 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 HOMER1Q86YM7 354 aa14.94□□□□□ -0.02
LIG1-221ENST00000613670 MYL6BP14649 208 aa14.93□□□□□ -0.02
LIG1-221ENST00000613670 PIBF1Q8WXW3 757 aa14.93□□□□□ -0.02
LIG1-221ENST00000613670 RBM33Q96EV2 1170 aaKnown RBP14.93□□□□□ -0.02
LIG1-221ENST00000613670 SH2B1Q9NRF2 756 aaPredicted RBP14.93□□□□□ -0.02
LIG1-221ENST00000613670 AK9Q5TCS8 1911 aa14.93□□□□□ -0.02
LIG1-221ENST00000613670 KINO60870 393 aaKnown RBP14.93□□□□□ -0.02
LIG1-221ENST00000613670 TNNT1P13805 278 aa14.93□□□□□ -0.02
LIG1-221ENST00000613670 PDLIM2Q96JY6 352 aa14.93□□□□□ -0.02
LIG1-221ENST00000613670 QRICH2Q9H0J4 1663 aa14.93□□□□□ -0.02
LIG1-221ENST00000613670 PSME1Q06323 249 aa14.93□□□□□ -0.02
LIG1-221ENST00000613670 TRMT1Q9NXH9 659 aaKnown RBP14.93□□□□□ -0.02
LIG1-221ENST00000613670 NBPF7P0C2Y1 421 aaPredicted RBP14.92□□□□□ -0.02
LIG1-221ENST00000613670 ZNF165P49910 485 aa14.92□□□□□ -0.02
LIG1-221ENST00000613670 RASEFQ8IZ41 740 aa14.92□□□□□ -0.02
LIG1-221ENST00000613670 EDC4Q6P2E9 1401 aaKnown RBP14.92□□□□□ -0.02
LIG1-221ENST00000613670 MYOM1P52179 1685 aa14.92□□□□□ -0.02
LIG1-221ENST00000613670 GUCY1B3Q02153 619 aa14.92□□□□□ -0.02
LIG1-221ENST00000613670 ANO6Q4KMQ2 910 aa14.92□□□□□ -0.02
LIG1-221ENST00000613670 ERC1Q8IUD2 1116 aa14.92□□□□□ -0.02
LIG1-221ENST00000613670 MYRIPQ8NFW9 859 aa14.92□□□□□ -0.02
LIG1-221ENST00000613670 RBM8AQ9Y5S9 174 aaKnown RBP14.92□□□□□ -0.02
LIG1-221ENST00000613670 SGSM2O43147 1006 aa14.92□□□□□ -0.02
LIG1-221ENST00000613670 HSPA4P34932 840 aa14.92□□□□□ -0.02
LIG1-221ENST00000613670 ME1P48163 572 aa14.92□□□□□ -0.02
LIG1-221ENST00000613670 CCDC94Q9BW85 323 aaPredicted RBP14.92□□□□□ -0.02
LIG1-221ENST00000613670 USP44Q9H0E7 712 aa14.91□□□□□ -0.02
LIG1-221ENST00000613670 CLIP2Q9UDT6 1046 aa14.91□□□□□ -0.02
LIG1-221ENST00000613670 TPM4P67936 248 aa14.91□□□□□ -0.02
LIG1-221ENST00000613670 LRRC2Q9BYS8 371 aa14.91□□□□□ -0.02
LIG1-221ENST00000613670 LRRC7Q96NW7 1537 aa14.91□□□□□ -0.02
LIG1-221ENST00000613670 CHD1O14646 1710 aa14.91□□□□□ -0.02
LIG1-221ENST00000613670 PNPLA6Q8IY17 1366 aa14.9□□□□□ -0.02
LIG1-221ENST00000613670 SMC2O95347 1197 aa14.9□□□□□ -0.02
LIG1-221ENST00000613670 CUL4AQ13619 759 aa14.9□□□□□ -0.02
LIG1-221ENST00000613670 SCAND2PQ9GZW5 306 aaPredicted RBP14.9□□□□□ -0.02
LIG1-221ENST00000613670 KIF24Q5T7B8 1368 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms