RNA–Protein interactions for RNA: ENST00000607805.5

NECAB3-222, Transcript of N-terminal EF-hand calcium binding protein 3, human

TSL 5

Gene NECAB3, Length 969 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAB3-222	ENST00000607805	IFFO2	Q5TF58	517 aa		28.56	■■■□□ 2.16
NECAB3-222	ENST00000607805	COL3A1	P02461	1466 aa	Predicted RBP	28.55	■■■□□ 2.16
NECAB3-222	ENST00000607805	DALRD3	Q5D0E6	543 aa	Known RBP	28.55	■■■□□ 2.16
NECAB3-222	ENST00000607805	USPL1	Q5W0Q7	1092 aa		28.55	■■■□□ 2.16
NECAB3-222	ENST00000607805	NMRK2	Q9NPI5	230 aa		28.55	■■■□□ 2.16
NECAB3-222	ENST00000607805	CHRNA5	P30532	468 aa		28.54	■■■□□ 2.16
NECAB3-222	ENST00000607805	C9orf131	Q5VYM1	1079 aa		28.54	■■■□□ 2.16
NECAB3-222	ENST00000607805	COL15A1	P39059	1388 aa		28.53	■■■□□ 2.16
NECAB3-222	ENST00000607805	ZPR1	O75312	459 aa		28.53	■■■□□ 2.16
NECAB3-222	ENST00000607805	VSIG10	Q8N0Z9	540 aa		28.53	■■■□□ 2.16
NECAB3-222	ENST00000607805	NARF	Q9UHQ1	456 aa		28.53	■■■□□ 2.16
NECAB3-222	ENST00000607805	WDR90	Q96KV7	1748 aa		28.52	■■■□□ 2.16
NECAB3-222	ENST00000607805	DIAPH1	O60610	1272 aa	Known RBP	28.52	■■■□□ 2.16
NECAB3-222	ENST00000607805	BCL2L12	Q9HB09	334 aa		28.52	■■■□□ 2.16
NECAB3-222	ENST00000607805	ZBTB1	Q9Y2K1	713 aa		28.52	■■■□□ 2.16
NECAB3-222	ENST00000607805	PCNT	O95613	3336 aa		28.52	■■■□□ 2.16
NECAB3-222	ENST00000607805	TNRC6C	Q9HCJ0	1690 aa	Known RBP	28.51	■■■□□ 2.16
NECAB3-222	ENST00000607805	ANKRD31	Q8N7Z5	1873 aa		28.51	■■■□□ 2.15
NECAB3-222	ENST00000607805	NFIX	Q14938	502 aa		28.5	■■■□□ 2.15
NECAB3-222	ENST00000607805	NPC1L1	Q9UHC9	1359 aa		28.5	■■■□□ 2.15
NECAB3-222	ENST00000607805	APLP1	P51693	650 aa		28.49	■■■□□ 2.15
NECAB3-222	ENST00000607805	DNAJC5G	Q8N7S2	189 aa		28.48	■■■□□ 2.15
NECAB3-222	ENST00000607805	CC2D1B	Q5T0F9	858 aa	Known RBP	28.47	■■■□□ 2.15
NECAB3-222	ENST00000607805	SCN7A	Q01118	1682 aa		28.46	■■■□□ 2.15
NECAB3-222	ENST00000607805	RBM46	Q8TBY0	533 aa	Known RBP	28.46	■■■□□ 2.15
NECAB3-222	ENST00000607805	DICER1	Q9UPY3	1922 aa	Known RBP	28.45	■■■□□ 2.14
NECAB3-222	ENST00000607805	RNF181	Q9P0P0	153 aa		28.44	■■■□□ 2.14
NECAB3-222	ENST00000607805	EIF5	P55010	431 aa	Known RBP	28.43	■■■□□ 2.14
NECAB3-222	ENST00000607805	SERPINB2	P05120	415 aa		28.42	■■■□□ 2.14
NECAB3-222	ENST00000607805	IL17RE	Q8NFR9	667 aa		28.42	■■■□□ 2.14
NECAB3-222	ENST00000607805	TIAM2	Q8IVF5	1701 aa		28.42	■■■□□ 2.14
NECAB3-222	ENST00000607805	FER1L6	Q2WGJ9	1857 aa		28.41	■■■□□ 2.14
NECAB3-222	ENST00000607805	KDM2B	Q8NHM5	1336 aa		28.41	■■■□□ 2.14
NECAB3-222	ENST00000607805	CARMIL3	Q8ND23	1372 aa		28.4	■■■□□ 2.14
NECAB3-222	ENST00000607805	COL11A2	P13942	1736 aa	Predicted RBP	28.4	■■■□□ 2.14
NECAB3-222	ENST00000607805	CANX	P27824	592 aa	Known RBP	28.39	■■■□□ 2.14
NECAB3-222	ENST00000607805	PRELP	P51888	382 aa		28.39	■■■□□ 2.14
NECAB3-222	ENST00000607805	ZNF496	Q96IT1	587 aa	Predicted RBP	28.39	■■■□□ 2.14
NECAB3-222	ENST00000607805	HEG1	Q9ULI3	1381 aa		28.38	■■■□□ 2.13
NECAB3-222	ENST00000607805	BCOR	Q6W2J9	1755 aa		28.38	■■■□□ 2.13
NECAB3-222	ENST00000607805	STARD3NL	O95772	234 aa		28.38	■■■□□ 2.13
NECAB3-222	ENST00000607805	ZNF790	Q6PG37	636 aa		28.38	■■■□□ 2.13
NECAB3-222	ENST00000607805	ZC3H4	Q9UPT8	1303 aa	Known RBP	28.38	■■■□□ 2.13
NECAB3-222	ENST00000607805	GNAT3	A8MTJ3	354 aa		28.37	■■■□□ 2.13
NECAB3-222	ENST00000607805	RASSF7	Q02833	373 aa		28.37	■■■□□ 2.13
NECAB3-222	ENST00000607805	TTC5	Q8N0Z6	440 aa		28.37	■■■□□ 2.13
NECAB3-222	ENST00000607805	CEMIP	Q8WUJ3	1361 aa		28.37	■■■□□ 2.13
NECAB3-222	ENST00000607805	CACNA1S	Q13698	1873 aa		28.36	■■■□□ 2.13
NECAB3-222	ENST00000607805	FSTL1	Q12841	308 aa		28.36	■■■□□ 2.13
NECAB3-222	ENST00000607805	GAS2L2	Q8NHY3	880 aa		28.36	■■■□□ 2.13
NECAB3-222	ENST00000607805	TTLL6	Q8N841	843 aa		28.35	■■■□□ 2.13
NECAB3-222	ENST00000607805	RRAGC	Q9HB90	399 aa		28.35	■■■□□ 2.13
NECAB3-222	ENST00000607805		A0A087WZG4	1122 aa		28.34	■■■□□ 2.13
NECAB3-222	ENST00000607805	TEX13A	Q9BXU3	409 aa	Predicted RBP	28.34	■■■□□ 2.13
NECAB3-222	ENST00000607805	ARFGEF2	Q9Y6D5	1785 aa		28.34	■■■□□ 2.13
NECAB3-222	ENST00000607805	U2SURP	O15042	1029 aa	Known RBP	28.33	■■■□□ 2.13
NECAB3-222	ENST00000607805	LMNB1	P20700	586 aa		28.33	■■■□□ 2.13
NECAB3-222	ENST00000607805	TEF	Q10587	303 aa		28.33	■■■□□ 2.13
NECAB3-222	ENST00000607805	C2CD5	Q86YS7	1000 aa		28.33	■■■□□ 2.13
NECAB3-222	ENST00000607805	C16orf71	Q8IYS4	520 aa	Predicted RBP	28.33	■■■□□ 2.13
NECAB3-222	ENST00000607805	TBC1D9B	Q66K14	1250 aa		28.32	■■■□□ 2.12
NECAB3-222	ENST00000607805	IL6ST	P40189	918 aa	Predicted RBP	28.31	■■■□□ 2.12
NECAB3-222	ENST00000607805	SLX4	Q8IY92	1834 aa		28.31	■■■□□ 2.12
NECAB3-222	ENST00000607805		H0YIN7	160 aa		28.3	■■■□□ 2.12
NECAB3-222	ENST00000607805	NFKBIE	O00221	500 aa		28.3	■■■□□ 2.12
NECAB3-222	ENST00000607805	BICDL1	Q6ZP65	573 aa		28.3	■■■□□ 2.12
NECAB3-222	ENST00000607805	PHACTR3	Q96KR7	559 aa		28.3	■■■□□ 2.12
NECAB3-222	ENST00000607805	GLTPD2	A6NH11	291 aa		28.28	■■■□□ 2.12
NECAB3-222	ENST00000607805	HTRA3	P83110	453 aa		28.28	■■■□□ 2.12
NECAB3-222	ENST00000607805	FMNL2	Q96PY5	1086 aa		28.28	■■■□□ 2.12
NECAB3-222	ENST00000607805	RSPH6A	Q9H0K4	717 aa		28.28	■■■□□ 2.12
NECAB3-222	ENST00000607805	TBC1D2B	Q9UPU7	963 aa		28.28	■■■□□ 2.12
NECAB3-222	ENST00000607805	PRR5L	Q6MZQ0	368 aa		28.27	■■■□□ 2.12
NECAB3-222	ENST00000607805	BRIP1	Q9BX63	1249 aa		28.27	■■■□□ 2.12
NECAB3-222	ENST00000607805	PDZRN3	Q9UPQ7	1066 aa		28.27	■■■□□ 2.12
NECAB3-222	ENST00000607805	KCNQ3	O43525	872 aa		28.26	■■■□□ 2.11
NECAB3-222	ENST00000607805	A1BG	P04217	495 aa		28.26	■■■□□ 2.11
NECAB3-222	ENST00000607805	KLRG1	Q96E93	195 aa		28.26	■■■□□ 2.11
NECAB3-222	ENST00000607805	CAMTA2	O94983	1202 aa		28.25	■■■□□ 2.11
NECAB3-222	ENST00000607805	JMY	Q8N9B5	988 aa		28.25	■■■□□ 2.11
NECAB3-222	ENST00000607805	PRKAR2B	P31323	418 aa		28.24	■■■□□ 2.11
NECAB3-222	ENST00000607805	CNGB1	Q14028	1251 aa	Predicted RBP	28.24	■■■□□ 2.11
NECAB3-222	ENST00000607805	SMC1B	Q8NDV3	1235 aa		28.24	■■■□□ 2.11
NECAB3-222	ENST00000607805	DLG5	Q8TDM6	1919 aa		28.24	■■■□□ 2.11
NECAB3-222	ENST00000607805	PDE6B	P35913	854 aa		28.23	■■■□□ 2.11
NECAB3-222	ENST00000607805	VEGFA	P15692	232 aa	Predicted RBP	28.22	■■■□□ 2.11
NECAB3-222	ENST00000607805	BTBD11	A6QL63	1104 aa		28.21	■■■□□ 2.11
NECAB3-222	ENST00000607805	POTEC	B2RU33	542 aa		28.21	■■■□□ 2.11
NECAB3-222	ENST00000607805	CCDC24	Q8N4L8	307 aa		28.2	■■■□□ 2.1
NECAB3-222	ENST00000607805	ZNF622	Q969S3	477 aa	Known RBP eCLIP	28.2	■■■□□ 2.1	1e-6	■■□□□ 14.2
NECAB3-222	ENST00000607805	ZNF330	Q9Y3S2	320 aa	Predicted RBP	28.2	■■■□□ 2.1
NECAB3-222	ENST00000607805	USP16	Q9Y5T5	823 aa		28.2	■■■□□ 2.1
NECAB3-222	ENST00000607805	C21orf2	O43822	256 aa		28.18	■■■□□ 2.1
NECAB3-222	ENST00000607805	CFAP53	Q96M91	514 aa		28.18	■■■□□ 2.1
NECAB3-222	ENST00000607805	SETDB2	Q96T68	719 aa		28.18	■■■□□ 2.1
NECAB3-222	ENST00000607805	LTBP3	Q9NS15	1303 aa		28.18	■■■□□ 2.1
NECAB3-222	ENST00000607805	PRAMEF22	A3QJZ6	481 aa		28.16	■■■□□ 2.1
NECAB3-222	ENST00000607805	DZIP3	Q86Y13	1208 aa	Known RBP	28.16	■■■□□ 2.1
NECAB3-222	ENST00000607805	CNBD1	Q8NA66	436 aa		28.16	■■■□□ 2.1
NECAB3-222	ENST00000607805	LAMB4	A4D0S4	1761 aa		28.16	■■■□□ 2.1

Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms