RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 NARFQ9UHQ1 456 aa17.71■□□□□ 0.43
RPS28-204ENST00000602140 BRCA1P38398 1863 aaKnown RBP17.71■□□□□ 0.43
RPS28-204ENST00000602140 GNAT3A8MTJ3 354 aa17.7■□□□□ 0.42
RPS28-204ENST00000602140 KIF3CO14782 793 aa17.7■□□□□ 0.42
RPS28-204ENST00000602140 CHRNA5P30532 468 aa17.7■□□□□ 0.42
RPS28-204ENST00000602140 IL17REQ8NFR9 667 aa17.7■□□□□ 0.42
RPS28-204ENST00000602140 GAS2L2Q8NHY3 880 aa17.7■□□□□ 0.42
RPS28-204ENST00000602140 CANXP27824 592 aaKnown RBP17.69■□□□□ 0.42
RPS28-204ENST00000602140 TEFQ10587 303 aa17.69■□□□□ 0.42
RPS28-204ENST00000602140 NFIXQ14938 502 aa17.69■□□□□ 0.42
RPS28-204ENST00000602140 DALRD3Q5D0E6 543 aaKnown RBP17.69■□□□□ 0.42
RPS28-204ENST00000602140 UBR2Q8IWV8 1755 aa17.68■□□□□ 0.42
RPS28-204ENST00000602140 STARD3NLO95772 234 aa17.68■□□□□ 0.42
RPS28-204ENST00000602140 HSPA6P17066 643 aa17.67■□□□□ 0.42
RPS28-204ENST00000602140 ZNF790Q6PG37 636 aa17.67■□□□□ 0.42
RPS28-204ENST00000602140 ZNF496Q96IT1 587 aaPredicted RBP17.67■□□□□ 0.42
RPS28-204ENST00000602140 CFAP53Q96M91 514 aa17.67■□□□□ 0.42
RPS28-204ENST00000602140 BCL2L12Q9HB09 334 aa17.67■□□□□ 0.42
RPS28-204ENST00000602140 ARFGEF1Q9Y6D6 1849 aa17.66■□□□□ 0.42
RPS28-204ENST00000602140 PRKAR2BP31323 418 aa17.66■□□□□ 0.42
RPS28-204ENST00000602140 C9orf131Q5VYM1 1079 aa17.66■□□□□ 0.42
RPS28-204ENST00000602140 PHACTR3Q96KR7 559 aa17.66■□□□□ 0.42
RPS28-204ENST00000602140 HEG1Q9ULI3 1381 aa17.66■□□□□ 0.42
RPS28-204ENST00000602140 SERPINB2P05120 415 aa17.65■□□□□ 0.42
RPS28-204ENST00000602140 EIF5P55010 431 aaKnown RBP17.65■□□□□ 0.42
RPS28-204ENST00000602140 RSPH6AQ9H0K4 717 aa17.65■□□□□ 0.42
RPS28-204ENST00000602140 TEX13AQ9BXU3 409 aaPredicted RBP17.64■□□□□ 0.41
RPS28-204ENST00000602140 AFDNP55196 1824 aaKnown RBP17.63■□□□□ 0.41
RPS28-204ENST00000602140 A0A087WZG4 1122 aa17.63■□□□□ 0.41
RPS28-204ENST00000602140 BICDL1Q6ZP65 573 aa17.63■□□□□ 0.41
RPS28-204ENST00000602140 NMRK2Q9NPI5 230 aa17.63■□□□□ 0.41
RPS28-204ENST00000602140 NUDCQ9Y266 331 aa17.63■□□□□ 0.41
RPS28-204ENST00000602140 NRXN2Q9P2S2 1712 aa17.63■□□□□ 0.41
RPS28-204ENST00000602140 CEMIPQ8WUJ3 1361 aa17.63■□□□□ 0.41
RPS28-204ENST00000602140 SIPA1L3O60292 1781 aaPredicted RBP17.63■□□□□ 0.41
RPS28-204ENST00000602140 PPP2R1AP30153 589 aa17.62■□□□□ 0.41
RPS28-204ENST00000602140 FMNL2Q96PY5 1086 aa17.62■□□□□ 0.41
RPS28-204ENST00000602140 RNF181Q9P0P0 153 aa17.62■□□□□ 0.41
RPS28-204ENST00000602140 ZNF330Q9Y3S2 320 aaPredicted RBP17.62■□□□□ 0.41
RPS28-204ENST00000602140 BTBD11A6QL63 1104 aa17.61■□□□□ 0.41
RPS28-204ENST00000602140 KCNQ3O43525 872 aa17.61■□□□□ 0.41
RPS28-204ENST00000602140 TOMM70O94826 608 aa17.61■□□□□ 0.41
RPS28-204ENST00000602140 U2AF1L5P0DN76 240 aaPredicted RBP17.61■□□□□ 0.41
RPS28-204ENST00000602140 U2AF1Q01081 240 aaKnown RBP eCLIP17.61■□□□□ 0.41
RPS28-204ENST00000602140 TBC1D2BQ9UPU7 963 aa17.61■□□□□ 0.41
RPS28-204ENST00000602140 A1BGP04217 495 aa17.6■□□□□ 0.41
RPS28-204ENST00000602140 TBC1D9BQ66K14 1250 aa17.6■□□□□ 0.41
RPS28-204ENST00000602140 CARMIL3Q8ND23 1372 aa17.6■□□□□ 0.41
RPS28-204ENST00000602140 IL6STP40189 918 aaPredicted RBP17.59■□□□□ 0.41
RPS28-204ENST00000602140 C2CD5Q86YS7 1000 aa17.59■□□□□ 0.41
RPS28-204ENST00000602140 H0YIN7 160 aa17.58■□□□□ 0.4
RPS28-204ENST00000602140 RASSF7Q02833 373 aa17.58■□□□□ 0.4
RPS28-204ENST00000602140 NPM2Q86SE8 214 aaKnown RBP17.58■□□□□ 0.4
RPS28-204ENST00000602140 TTLL6Q8N841 843 aa17.58■□□□□ 0.4
RPS28-204ENST00000602140 KDM2BQ8NHM5 1336 aa17.57■□□□□ 0.4
RPS28-204ENST00000602140 MCM10Q7L590 875 aa17.57■□□□□ 0.4
RPS28-204ENST00000602140 RTF1Q92541 710 aaKnown RBP17.57■□□□□ 0.4
RPS28-204ENST00000602140 SCN7AQ01118 1682 aa17.57■□□□□ 0.4
RPS28-204ENST00000602140 C16orf71Q8IYS4 520 aaPredicted RBP17.56■□□□□ 0.4
RPS28-204ENST00000602140 CCDC24Q8N4L8 307 aa17.56■□□□□ 0.4
RPS28-204ENST00000602140 USP16Q9Y5T5 823 aa17.56■□□□□ 0.4
RPS28-204ENST00000602140 DLEC1Q9Y238 1755 aa17.56■□□□□ 0.4
RPS28-204ENST00000602140 CAMTA2O94983 1202 aa17.55■□□□□ 0.4
RPS28-204ENST00000602140 PIP4K2AP48426 406 aaPredicted RBP17.55■□□□□ 0.4
RPS28-204ENST00000602140 DCTN1Q14203 1278 aa17.55■□□□□ 0.4
RPS28-204ENST00000602140 PRR5LQ6MZQ0 368 aa17.55■□□□□ 0.4
RPS28-204ENST00000602140 SBF1O95248 1867 aa17.54■□□□□ 0.4
RPS28-204ENST00000602140 PRAMEF22A3QJZ6 481 aa17.54■□□□□ 0.4
RPS28-204ENST00000602140 LMNB1P20700 586 aa17.54■□□□□ 0.4
RPS28-204ENST00000602140 APLP1P51693 650 aa17.54■□□□□ 0.4
RPS28-204ENST00000602140 DZIP3Q86Y13 1208 aaKnown RBP17.54■□□□□ 0.4
RPS28-204ENST00000602140 RBM46Q8TBY0 533 aaKnown RBP17.54■□□□□ 0.4
RPS28-204ENST00000602140 SETDB2Q96T68 719 aa17.54■□□□□ 0.4
RPS28-204ENST00000602140 BRIP1Q9BX63 1249 aa17.54■□□□□ 0.4
RPS28-204ENST00000602140 RRAGCQ9HB90 399 aa17.54■□□□□ 0.4
RPS28-204ENST00000602140 SNRPA1P09661 255 aaKnown RBP17.53■□□□□ 0.4
RPS28-204ENST00000602140 PDE6BP35913 854 aa17.53■□□□□ 0.4
RPS28-204ENST00000602140 PRELPP51888 382 aa17.53■□□□□ 0.4
RPS28-204ENST00000602140 ZNF622Q969S3 477 aaKnown RBP eCLIP17.53■□□□□ 0.4
RPS28-204ENST00000602140 NPHP1O15259 732 aa17.52■□□□□ 0.4
RPS28-204ENST00000602140 HTATSF1O43719 755 aaKnown RBP17.52■□□□□ 0.4
RPS28-204ENST00000602140 PDZRN3Q9UPQ7 1066 aa17.52■□□□□ 0.4
RPS28-204ENST00000602140 ANKRD31Q8N7Z5 1873 aa17.52■□□□□ 0.39
RPS28-204ENST00000602140 ZC3H4Q9UPT8 1303 aaKnown RBP17.51■□□□□ 0.39
RPS28-204ENST00000602140 NFKBIEO00221 500 aa17.51■□□□□ 0.39
RPS28-204ENST00000602140 CNBD1Q8NA66 436 aa17.51■□□□□ 0.39
RPS28-204ENST00000602140 ZNF219Q9P2Y4 722 aaPredicted RBP17.5■□□□□ 0.39
RPS28-204ENST00000602140 TNRC6CQ9HCJ0 1690 aaKnown RBP17.49■□□□□ 0.39
RPS28-204ENST00000602140 BCORQ6W2J9 1755 aa17.49■□□□□ 0.39
RPS28-204ENST00000602140 C21orf2O43822 256 aa17.49■□□□□ 0.39
RPS28-204ENST00000602140 ST5P78524 1137 aa17.49■□□□□ 0.39
RPS28-204ENST00000602140 FSTL1Q12841 308 aa17.49■□□□□ 0.39
RPS28-204ENST00000602140 TAF7Q15545 349 aaPredicted RBP17.49■□□□□ 0.39
RPS28-204ENST00000602140 COL11A2P13942 1736 aaPredicted RBP17.48■□□□□ 0.39
RPS28-204ENST00000602140 GLTPD2A6NH11 291 aa17.48■□□□□ 0.39
RPS28-204ENST00000602140 NEFMP07197 916 aa17.48■□□□□ 0.39
RPS28-204ENST00000602140 CLEC4GQ6UXB4 293 aa17.48■□□□□ 0.39
RPS28-204ENST00000602140 DNAJC5GQ8N7S2 189 aa17.48■□□□□ 0.39
RPS28-204ENST00000602140 MIS18AQ9NYP9 233 aa17.48■□□□□ 0.39
RPS28-204ENST00000602140 NBPF26B4DH59 902 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms