RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 ATG3Q9NT62 314 aa22.79■■□□□ 1.24
VRK3-225ENST00000601912 ASAP1Q9ULH1 1129 aa22.79■■□□□ 1.24
VRK3-225ENST00000601912 UBR2Q8IWV8 1755 aa22.79■■□□□ 1.24
VRK3-225ENST00000601912 RGS12O14924 1447 aa22.79■■□□□ 1.24
VRK3-225ENST00000601912 GLI3P10071 1580 aa22.79■■□□□ 1.24
VRK3-225ENST00000601912 PHAXQ9H814 394 aaKnown RBP22.78■■□□□ 1.24
VRK3-225ENST00000601912 USP16Q9Y5T5 823 aa22.78■■□□□ 1.24
VRK3-225ENST00000601912 KCPQ6ZWJ8 1503 aa22.78■■□□□ 1.24
VRK3-225ENST00000601912 ONECUT3O60422 494 aaPredicted RBP22.77■■□□□ 1.24
VRK3-225ENST00000601912 PELP1Q8IZL8 1130 aaKnown RBP22.77■■□□□ 1.24
VRK3-225ENST00000601912 C5P01031 1676 aa22.77■■□□□ 1.24
VRK3-225ENST00000601912 THSD7AQ9UPZ6 1657 aa22.77■■□□□ 1.24
VRK3-225ENST00000601912 DOT1LQ8TEK3 1739 aa22.77■■□□□ 1.24
VRK3-225ENST00000601912 FBXO41Q8TF61 875 aa22.77■■□□□ 1.24
VRK3-225ENST00000601912 CCT4P50991 539 aaKnown RBP22.76■■□□□ 1.23
VRK3-225ENST00000601912 SLC4A10Q6U841 1118 aa22.76■■□□□ 1.23
VRK3-225ENST00000601912 VSIG10Q8N0Z9 540 aa22.76■■□□□ 1.23
VRK3-225ENST00000601912 TEX13AQ9BXU3 409 aaPredicted RBP22.76■■□□□ 1.23
VRK3-225ENST00000601912 F6X3S4 739 aa22.75■■□□□ 1.23
VRK3-225ENST00000601912 ANXA1P04083 346 aa22.75■■□□□ 1.23
VRK3-225ENST00000601912 ACSBG1Q96GR2 724 aa22.75■■□□□ 1.23
VRK3-225ENST00000601912 ZBTB7BO15156 539 aaPredicted RBP22.74■■□□□ 1.23
VRK3-225ENST00000601912 ZNF772Q68DY9 489 aaPredicted RBP22.74■■□□□ 1.23
VRK3-225ENST00000601912 ZBTB40Q9NUA8 1239 aa22.74■■□□□ 1.23
VRK3-225ENST00000601912 ERBB4Q15303 1308 aa22.74■■□□□ 1.23
VRK3-225ENST00000601912 PDIA6Q15084 440 aa22.74■■□□□ 1.23
VRK3-225ENST00000601912 PROSER3Q2NL68 480 aa22.74■■□□□ 1.23
VRK3-225ENST00000601912 RBM42Q9BTD8 480 aaKnown RBP22.74■■□□□ 1.23
VRK3-225ENST00000601912 DDX58O95786 925 aaKnown RBP22.73■■□□□ 1.23
VRK3-225ENST00000601912 LAMB4A4D0S4 1761 aa22.72■■□□□ 1.23
VRK3-225ENST00000601912 SEPT12Q8IYM1 358 aa22.72■■□□□ 1.23
VRK3-225ENST00000601912 MYL6BP14649 208 aa22.71■■□□□ 1.23
VRK3-225ENST00000601912 PXDNLA1KZ92 1463 aa22.71■■□□□ 1.23
VRK3-225ENST00000601912 CENPQQ7L2Z9 268 aaPredicted RBP22.71■■□□□ 1.23
VRK3-225ENST00000601912 PI4KAP2A4QPH2 592 aa22.7■■□□□ 1.22
VRK3-225ENST00000601912 STARD3NLO95772 234 aa22.7■■□□□ 1.22
VRK3-225ENST00000601912 PI4KAP1Q8N8J0 262 aa22.7■■□□□ 1.22
VRK3-225ENST00000601912 DNAAF4Q8WXU2 420 aa22.7■■□□□ 1.22
VRK3-225ENST00000601912 PCDHB15Q9Y5E8 787 aa22.7■■□□□ 1.22
VRK3-225ENST00000601912 KSR2Q6VAB6 950 aa22.69■■□□□ 1.22
VRK3-225ENST00000601912 SMARCC1Q92922 1105 aaPredicted RBP22.69■■□□□ 1.22
VRK3-225ENST00000601912 RWDD1Q9H446 243 aaPredicted RBP22.68■■□□□ 1.22
VRK3-225ENST00000601912 AIMP1Q12904 312 aaKnown RBP22.68■■□□□ 1.22
VRK3-225ENST00000601912 KDM2BQ8NHM5 1336 aa22.67■■□□□ 1.22
VRK3-225ENST00000601912 KCNQ2O43526 872 aa22.67■■□□□ 1.22
VRK3-225ENST00000601912 COPS6Q7L5N1 327 aa22.67■■□□□ 1.22
VRK3-225ENST00000601912 DNAJC10Q8IXB1 793 aa22.67■■□□□ 1.22
VRK3-225ENST00000601912 XAGE3Q8WTP9 111 aa22.67■■□□□ 1.22
VRK3-225ENST00000601912 SRCIN1Q9C0H9 1055 aa22.66■■□□□ 1.22
VRK3-225ENST00000601912 MAP3K2Q9Y2U5 619 aa22.66■■□□□ 1.22
VRK3-225ENST00000601912 ADCY9O60503 1353 aa22.66■■□□□ 1.22
VRK3-225ENST00000601912 A1BGP04217 495 aa22.65■■□□□ 1.22
VRK3-225ENST00000601912 RBM6P78332 1123 aaKnown RBP22.65■■□□□ 1.22
VRK3-225ENST00000601912 LRP10Q7Z4F1 713 aa22.65■■□□□ 1.22
VRK3-225ENST00000601912 PIP4K2AP48426 406 aaPredicted RBP22.65■■□□□ 1.22
VRK3-225ENST00000601912 RIC3Q7Z5B4 369 aa22.65■■□□□ 1.22
VRK3-225ENST00000601912 NBPF26B4DH59 902 aa22.64■■□□□ 1.21
VRK3-225ENST00000601912 IGHDP01880 384 aa22.64■■□□□ 1.21
VRK3-225ENST00000601912 NBPF14Q5TI25 921 aa22.64■■□□□ 1.21
VRK3-225ENST00000601912 NBPF10Q6P3W6 841 aaKnown RBP22.64■■□□□ 1.21
VRK3-225ENST00000601912 NBPF15Q8N660 670 aa22.64■■□□□ 1.21
VRK3-225ENST00000601912 GNAI3P08754 354 aa22.63■■□□□ 1.21
VRK3-225ENST00000601912 ANKRD13DQ6ZTN6 518 aa22.63■■□□□ 1.21
VRK3-225ENST00000601912 SLC4A9Q96Q91 983 aa22.63■■□□□ 1.21
VRK3-225ENST00000601912 PALLDQ8WX93 1383 aa22.63■■□□□ 1.21
VRK3-225ENST00000601912 ATP10DQ9P241 1426 aa22.63■■□□□ 1.21
VRK3-225ENST00000601912 HDAC1Q13547 482 aaPredicted RBP22.62■■□□□ 1.21
VRK3-225ENST00000601912 BEND3Q5T5X7 828 aa22.62■■□□□ 1.21
VRK3-225ENST00000601912 MEIS3Q99687 375 aa22.62■■□□□ 1.21
VRK3-225ENST00000601912 LOC102724428A0A0B4J2F2 783 aa22.62■■□□□ 1.21
VRK3-225ENST00000601912 SIK1P57059 783 aa22.62■■□□□ 1.21
VRK3-225ENST00000601912 FAM182BQ5T319 152 aa22.62■■□□□ 1.21
VRK3-225ENST00000601912 N4BP2Q86UW6 1770 aaPredicted RBP22.61■■□□□ 1.21
VRK3-225ENST00000601912 CYP19A1P11511 503 aaPredicted RBP22.61■■□□□ 1.21
VRK3-225ENST00000601912 ATP6V1AP38606 617 aa22.61■■□□□ 1.21
VRK3-225ENST00000601912 NEXNQ0ZGT2 675 aa22.61■■□□□ 1.21
VRK3-225ENST00000601912 C1orf115Q9H7X2 142 aa22.61■■□□□ 1.21
VRK3-225ENST00000601912 ALDH1L1O75891 902 aa22.6■■□□□ 1.21
VRK3-225ENST00000601912 KRT27Q7Z3Y8 459 aa22.6■■□□□ 1.21
VRK3-225ENST00000601912 PLBD2Q8NHP8 589 aa22.6■■□□□ 1.21
VRK3-225ENST00000601912 LINS1Q8NG48 757 aa22.59■■□□□ 1.21
VRK3-225ENST00000601912 NHSQ6T4R5 1651 aa22.58■■□□□ 1.21
VRK3-225ENST00000601912 GNAI2P04899 355 aa22.58■■□□□ 1.2
VRK3-225ENST00000601912 FAM196AQ6ZSG2 479 aa22.58■■□□□ 1.2
VRK3-225ENST00000601912 RPAP2Q8IXW5 612 aaPredicted RBP22.58■■□□□ 1.2
VRK3-225ENST00000601912 METTL22Q9BUU2 404 aaPredicted RBP22.58■■□□□ 1.2
VRK3-225ENST00000601912 USP44Q9H0E7 712 aa22.58■■□□□ 1.2
VRK3-225ENST00000601912 RXRBP28702 533 aa22.57■■□□□ 1.2
VRK3-225ENST00000601912 UBTFL1P0CB47 393 aaPredicted RBP22.56■■□□□ 1.2
VRK3-225ENST00000601912 NPM2Q86SE8 214 aaKnown RBP22.56■■□□□ 1.2
VRK3-225ENST00000601912 TJP1Q07157 1748 aa22.56■■□□□ 1.2
VRK3-225ENST00000601912 HDAC5Q9UQL6 1122 aa22.55■■□□□ 1.2
VRK3-225ENST00000601912 ZNF330Q9Y3S2 320 aaPredicted RBP22.55■■□□□ 1.2
VRK3-225ENST00000601912 TTLL7Q6ZT98 887 aa22.55■■□□□ 1.2
VRK3-225ENST00000601912 MYD88Q99836 296 aa22.55■■□□□ 1.2
VRK3-225ENST00000601912 KIF6Q6ZMV9 814 aa22.54■■□□□ 1.2
VRK3-225ENST00000601912 PTF1AQ7RTS3 328 aa22.54■■□□□ 1.2
VRK3-225ENST00000601912 ANKRD44Q8N8A2 993 aa22.54■■□□□ 1.2
VRK3-225ENST00000601912 BCL11BQ9C0K0 894 aaPredicted RBP22.54■■□□□ 1.2
VRK3-225ENST00000601912 C9orf78Q9NZ63 289 aaPredicted RBP22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms