RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 TSPY26PQ9H489 355 aa12.38□□□□□ -0.43
LIG1-220ENST00000601091 AIMP1Q12904 312 aaKnown RBP12.38□□□□□ -0.43
LIG1-220ENST00000601091 LRRFIP2Q9Y608 721 aaKnown RBP12.38□□□□□ -0.43
LIG1-220ENST00000601091 RAB11FIP3O75154 756 aa12.38□□□□□ -0.43
LIG1-220ENST00000601091 MAP4K4O95819 1239 aaPredicted RBP12.38□□□□□ -0.43
LIG1-220ENST00000601091 ZSCAN30Q86W11 494 aa12.38□□□□□ -0.43
LIG1-220ENST00000601091 NUTM1Q86Y26 1132 aa12.38□□□□□ -0.43
LIG1-220ENST00000601091 CD2BP2O95400 341 aaKnown RBP12.37□□□□□ -0.43
LIG1-220ENST00000601091 NBPF9Q3BBW0 867 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 ERC1Q8IUD2 1116 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 KIF1BPQ96EK5 621 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 ABCA6Q8N139 1617 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 CHL1O00533 1208 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 ZNF530Q6P9A1 599 aaPredicted RBP12.37□□□□□ -0.43
LIG1-220ENST00000601091 RIC3Q7Z5B4 369 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 USP26Q9BXU7 913 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 KIF3AQ9Y496 699 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 CEP83Q9Y592 693 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 NRDCO43847 1150 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 RBM26Q5T8P6 1007 aaKnown RBP12.37□□□□□ -0.43
LIG1-220ENST00000601091 NBPF6Q5VWK0 638 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 NBPF5PQ86XG9 351 aaPredicted RBP12.37□□□□□ -0.43
LIG1-220ENST00000601091 NBPF4Q96M43 638 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 MYCBPQ99417 103 aaPredicted RBP12.37□□□□□ -0.43
LIG1-220ENST00000601091 ABCC4O15439 1325 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 H3BQV1 296 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 BRD1O95696 1058 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 MFSD4BQ5TF39 518 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 IFFO2Q5TF58 517 aa12.37□□□□□ -0.43
LIG1-220ENST00000601091 RBM27Q9P2N5 1060 aaKnown RBP12.37□□□□□ -0.43
LIG1-220ENST00000601091 CALRP27797 417 aaKnown RBP12.36□□□□□ -0.43
LIG1-220ENST00000601091 PAIP2Q9BPZ3 127 aaKnown RBP12.36□□□□□ -0.43
LIG1-220ENST00000601091 TOMM22Q9NS69 142 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 IQGAP1P46940 1657 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 PSMA5P28066 241 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 ESCO1Q5FWF5 840 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 GORABQ5T7V8 394 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 FAM184AQ8NB25 1140 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 A0A0G2JS52 829 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 SYCE3A1L190 88 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 FSD2A1L4K1 749 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 MTHFSDQ2M296 383 aaKnown RBP12.36□□□□□ -0.43
LIG1-220ENST00000601091 TSHZ3Q63HK5 1081 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 TTC5Q8N0Z6 440 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 OTUD6BQ8N6M0 293 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 TTC21AQ8NDW8 1320 aa12.36□□□□□ -0.43
LIG1-220ENST00000601091 CCDC66A2RUB6 948 aa12.35□□□□□ -0.43
LIG1-220ENST00000601091 NAP1L1P55209 391 aaKnown RBP12.35□□□□□ -0.43
LIG1-220ENST00000601091 CWC27Q6UX04 472 aaKnown RBP12.35□□□□□ -0.43
LIG1-220ENST00000601091 RAPGEF4Q8WZA2 1011 aa12.35□□□□□ -0.43
LIG1-220ENST00000601091 TNRQ92752 1358 aa12.35□□□□□ -0.43
LIG1-220ENST00000601091 HIP1O00291 1037 aa12.35□□□□□ -0.43
LIG1-220ENST00000601091 ZSCAN20P17040 1043 aaPredicted RBP12.35□□□□□ -0.43
LIG1-220ENST00000601091 EXOC8Q8IYI6 725 aa12.35□□□□□ -0.43
LIG1-220ENST00000601091 CEP152O94986 1710 aa12.35□□□□□ -0.43
LIG1-220ENST00000601091 CYP46A1Q9Y6A2 500 aa12.35□□□□□ -0.43
LIG1-220ENST00000601091 SETBP1Q9Y6X0 1596 aa12.34□□□□□ -0.43
LIG1-220ENST00000601091 ABCC3O15438 1527 aa12.34□□□□□ -0.43
LIG1-220ENST00000601091 FIBPO43427 364 aa12.34□□□□□ -0.43
LIG1-220ENST00000601091 FSD1Q9BTV5 496 aa12.34□□□□□ -0.43
LIG1-220ENST00000601091 TMX4Q9H1E5 349 aaPredicted RBP12.34□□□□□ -0.43
LIG1-220ENST00000601091 BTBD11A6QL63 1104 aa12.34□□□□□ -0.43
LIG1-220ENST00000601091 TMX3Q96JJ7 454 aa12.34□□□□□ -0.43
LIG1-220ENST00000601091 YEATS2Q9ULM3 1422 aa12.34□□□□□ -0.43
LIG1-220ENST00000601091 CFAP74Q9C0B2 1584 aa12.34□□□□□ -0.43
LIG1-220ENST00000601091 FOXO3O43524 673 aa12.34□□□□□ -0.43
LIG1-220ENST00000601091 GLRX3O76003 335 aaKnown RBP12.34□□□□□ -0.43
LIG1-220ENST00000601091 ATP8B2P98198 1209 aa12.34□□□□□ -0.43
LIG1-220ENST00000601091 OTUD7AQ8TE49 926 aaPredicted RBP12.34□□□□□ -0.43
LIG1-220ENST00000601091 TMX1Q9H3N1 280 aa12.34□□□□□ -0.43
LIG1-220ENST00000601091 FAM177BA6PVY3 158 aa12.33□□□□□ -0.44
LIG1-220ENST00000601091 DTNBO60941 627 aa12.33□□□□□ -0.44
LIG1-220ENST00000601091 PDCP20941 246 aa12.33□□□□□ -0.44
LIG1-220ENST00000601091 ZNF330Q9Y3S2 320 aaPredicted RBP12.33□□□□□ -0.44
LIG1-220ENST00000601091 ADGRB3O60242 1522 aa12.33□□□□□ -0.44
LIG1-220ENST00000601091 ATL2Q8NHH9 583 aa12.33□□□□□ -0.44
LIG1-220ENST00000601091 ESYT1Q9BSJ8 1104 aa12.33□□□□□ -0.44
LIG1-220ENST00000601091 KIF24Q5T7B8 1368 aa12.33□□□□□ -0.44
LIG1-220ENST00000601091 CEBPAP49715 358 aaPredicted RBP12.33□□□□□ -0.44
LIG1-220ENST00000601091 BIRC2Q13490 618 aa12.32□□□□□ -0.44
LIG1-220ENST00000601091 STK24Q9Y6E0 443 aa12.32□□□□□ -0.44
LIG1-220ENST00000601091 ZSCAN23Q3MJ62 389 aa12.32□□□□□ -0.44
LIG1-220ENST00000601091 PPP1R42Q7Z4L9 355 aa12.32□□□□□ -0.44
LIG1-220ENST00000601091 USHBP1Q8N6Y0 703 aa12.32□□□□□ -0.44
LIG1-220ENST00000601091 DNAAF4Q8WXU2 420 aa12.32□□□□□ -0.44
LIG1-220ENST00000601091 LMTK2Q8IWU2 1503 aa12.32□□□□□ -0.44
LIG1-220ENST00000601091 MAP3K19Q56UN5 1328 aa12.32□□□□□ -0.44
LIG1-220ENST00000601091 ARHGAP31Q2M1Z3 1444 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 KIAA1210Q9ULL0 1709 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 ZNF853P0CG23 659 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 PKP1Q13835 747 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 TSC1Q92574 1164 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 NLRP2Q9NX02 1062 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 HECW2Q9P2P5 1572 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 SPTY2D1Q68D10 685 aaPredicted RBP12.31□□□□□ -0.44
LIG1-220ENST00000601091 G2E3Q7L622 706 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 AACSQ86V21 672 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 BICD2Q8TD16 824 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 ZSCAN31Q96LW9 406 aaPredicted RBP12.31□□□□□ -0.44
LIG1-220ENST00000601091 TIGD1Q96MW7 591 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms