RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 CALD1Q05682 793 aaKnown RBP22.61■■□□□ 1.21
SHKBP1-212ENST00000596163 MSL1Q68DK7 614 aa22.61■■□□□ 1.21
SHKBP1-212ENST00000596163 NLGN1Q8N2Q7 840 aa22.61■■□□□ 1.21
SHKBP1-212ENST00000596163 COL5A3P25940 1745 aaPredicted RBP22.6■■□□□ 1.21
SHKBP1-212ENST00000596163 TUBGCP6Q96RT7 1819 aa22.6■■□□□ 1.21
SHKBP1-212ENST00000596163 A0A087WZG4 1122 aa22.6■■□□□ 1.21
SHKBP1-212ENST00000596163 CANXP27824 592 aaKnown RBP22.6■■□□□ 1.21
SHKBP1-212ENST00000596163 ZBTB1Q9Y2K1 713 aa22.6■■□□□ 1.21
SHKBP1-212ENST00000596163 UBR2Q8IWV8 1755 aa22.6■■□□□ 1.21
SHKBP1-212ENST00000596163 UBR3Q6ZT12 1888 aa22.6■■□□□ 1.21
SHKBP1-212ENST00000596163 TJP1Q07157 1748 aa22.6■■□□□ 1.21
SHKBP1-212ENST00000596163 SOS1Q07889 1333 aaPredicted RBP22.59■■□□□ 1.21
SHKBP1-212ENST00000596163 DLG5Q8TDM6 1919 aa22.59■■□□□ 1.21
SHKBP1-212ENST00000596163 ZPR1O75312 459 aa22.59■■□□□ 1.21
SHKBP1-212ENST00000596163 EIF4A1P60842 406 aaKnown RBP22.59■■□□□ 1.21
SHKBP1-212ENST00000596163 USP16Q9Y5T5 823 aa22.58■■□□□ 1.21
SHKBP1-212ENST00000596163 IL6STP40189 918 aaPredicted RBP22.57■■□□□ 1.2
SHKBP1-212ENST00000596163 CHL1O00533 1208 aa22.56■■□□□ 1.2
SHKBP1-212ENST00000596163 NCBP3Q53F19 620 aaKnown RBP22.56■■□□□ 1.2
SHKBP1-212ENST00000596163 FAM9BQ8IZU0 186 aa22.56■■□□□ 1.2
SHKBP1-212ENST00000596163 LAS1LQ9Y4W2 734 aaKnown RBP22.56■■□□□ 1.2
SHKBP1-212ENST00000596163 GIGYF1O75420 1035 aaPredicted RBP22.55■■□□□ 1.2
SHKBP1-212ENST00000596163 A1BGP04217 495 aa22.55■■□□□ 1.2
SHKBP1-212ENST00000596163 GYS1P13807 737 aa22.55■■□□□ 1.2
SHKBP1-212ENST00000596163 EIF5P55010 431 aaKnown RBP22.55■■□□□ 1.2
SHKBP1-212ENST00000596163 FHDC1Q9C0D6 1143 aaPredicted RBP22.55■■□□□ 1.2
SHKBP1-212ENST00000596163 NARFQ9UHQ1 456 aa22.55■■□□□ 1.2
SHKBP1-212ENST00000596163 USP42Q9H9J4 1324 aaKnown RBP22.55■■□□□ 1.2
SHKBP1-212ENST00000596163 COL15A1P39059 1388 aa22.54■■□□□ 1.2
SHKBP1-212ENST00000596163 CCDC27Q2M243 656 aa22.54■■□□□ 1.2
SHKBP1-212ENST00000596163 CFAP44Q96MT7 982 aa22.54■■□□□ 1.2
SHKBP1-212ENST00000596163 MYH14Q7Z406 1995 aaKnown RBP22.53■■□□□ 1.2
SHKBP1-212ENST00000596163 PRAMEF22A3QJZ6 481 aa22.53■■□□□ 1.2
SHKBP1-212ENST00000596163 DCAF8L1A6NGE4 600 aa22.53■■□□□ 1.2
SHKBP1-212ENST00000596163 SYT17Q9BSW7 474 aa22.53■■□□□ 1.2
SHKBP1-212ENST00000596163 ZNF330Q9Y3S2 320 aaPredicted RBP22.53■■□□□ 1.2
SHKBP1-212ENST00000596163 CCER2I3L3R5 266 aa22.52■■□□□ 1.2
SHKBP1-212ENST00000596163 GNAI1P63096 354 aa22.52■■□□□ 1.2
SHKBP1-212ENST00000596163 KLHL34Q8N239 644 aa22.52■■□□□ 1.2
SHKBP1-212ENST00000596163 SRP68Q9UHB9 627 aaKnown RBP22.52■■□□□ 1.2
SHKBP1-212ENST00000596163 MMP10P09238 476 aa22.51■■□□□ 1.19
SHKBP1-212ENST00000596163 USPL1Q5W0Q7 1092 aa22.51■■□□□ 1.19
SHKBP1-212ENST00000596163 DIEXFQ68CQ4 756 aaKnown RBP22.51■■□□□ 1.19
SHKBP1-212ENST00000596163 IFT57Q9NWB7 429 aa22.51■■□□□ 1.19
SHKBP1-212ENST00000596163 NGEFQ8N5V2 710 aa22.5■■□□□ 1.19
SHKBP1-212ENST00000596163 PARP3Q9Y6F1 533 aa22.5■■□□□ 1.19
SHKBP1-212ENST00000596163 COL24A1Q17RW2 1714 aa22.49■■□□□ 1.19
SHKBP1-212ENST00000596163 CD2APQ9Y5K6 639 aa22.49■■□□□ 1.19
SHKBP1-212ENST00000596163 FKBP8Q14318 412 aa22.48■■□□□ 1.19
SHKBP1-212ENST00000596163 KDM3BQ7LBC6 1761 aa22.48■■□□□ 1.19
SHKBP1-212ENST00000596163 ZNF853P0CG23 659 aa22.47■■□□□ 1.19
SHKBP1-212ENST00000596163 WWC1Q8IX03 1113 aa22.47■■□□□ 1.19
SHKBP1-212ENST00000596163 TBC1D2BQ9UPU7 963 aa22.47■■□□□ 1.19
SHKBP1-212ENST00000596163 ERBB4Q15303 1308 aa22.47■■□□□ 1.19
SHKBP1-212ENST00000596163 DZIP3Q86Y13 1208 aaKnown RBP22.46■■□□□ 1.19
SHKBP1-212ENST00000596163 NBPF26B4DH59 902 aa22.45■■□□□ 1.18
SHKBP1-212ENST00000596163 HOXB7P09629 217 aa22.45■■□□□ 1.18
SHKBP1-212ENST00000596163 EIF2S2P20042 333 aaKnown RBP22.45■■□□□ 1.18
SHKBP1-212ENST00000596163 PIP4K2AP48426 406 aaPredicted RBP22.45■■□□□ 1.18
SHKBP1-212ENST00000596163 NBPF10Q6P3W6 841 aaKnown RBP22.45■■□□□ 1.18
SHKBP1-212ENST00000596163 NBPF15Q8N660 670 aa22.45■■□□□ 1.18
SHKBP1-212ENST00000596163 MBIPQ9NS73 344 aa22.45■■□□□ 1.18
SHKBP1-212ENST00000596163 TM4SF1P30408 202 aa22.44■■□□□ 1.18
SHKBP1-212ENST00000596163 IL16Q14005 1332 aa22.43■■□□□ 1.18
SHKBP1-212ENST00000596163 WDR63Q8IWG1 891 aa22.43■■□□□ 1.18
SHKBP1-212ENST00000596163 CHMP4AQ9BY43 222 aa22.43■■□□□ 1.18
SHKBP1-212ENST00000596163 ZNF652Q9Y2D9 606 aa22.43■■□□□ 1.18
SHKBP1-212ENST00000596163 RGL2O15211 777 aa22.42■■□□□ 1.18
SHKBP1-212ENST00000596163 CLEC4GQ6UXB4 293 aa22.42■■□□□ 1.18
SHKBP1-212ENST00000596163 BCL2L12Q9HB09 334 aa22.42■■□□□ 1.18
SHKBP1-212ENST00000596163 SALL2Q9Y467 1007 aaPredicted RBP22.42■■□□□ 1.18
SHKBP1-212ENST00000596163 SENP3-EIF4A1A0A087X0R7 540 aa22.41■■□□□ 1.18
SHKBP1-212ENST00000596163 CAMTA2O94983 1202 aa22.41■■□□□ 1.18
SHKBP1-212ENST00000596163 MYL6BP14649 208 aa22.41■■□□□ 1.18
SHKBP1-212ENST00000596163 NFIXQ14938 502 aa22.41■■□□□ 1.18
SHKBP1-212ENST00000596163 C4AP0C0L4 1744 aa22.4■■□□□ 1.18
SHKBP1-212ENST00000596163 DUSP27Q5VZP5 1158 aa22.4■■□□□ 1.18
SHKBP1-212ENST00000596163 POLRMTO00411 1230 aaKnown RBP22.39■■□□□ 1.17
SHKBP1-212ENST00000596163 DDR1Q08345 913 aa22.39■■□□□ 1.17
SHKBP1-212ENST00000596163 KIF6Q6ZMV9 814 aa22.39■■□□□ 1.17
SHKBP1-212ENST00000596163 TGFB2P61812 414 aa22.38■■□□□ 1.17
SHKBP1-212ENST00000596163 KRT24Q2M2I5 525 aa22.38■■□□□ 1.17
SHKBP1-212ENST00000596163 HDGFL1Q5TGJ6 251 aa22.38■■□□□ 1.17
SHKBP1-212ENST00000596163 BICDL1Q6ZP65 573 aa22.38■■□□□ 1.17
SHKBP1-212ENST00000596163 NLGN2Q8NFZ4 835 aa22.38■■□□□ 1.17
SHKBP1-212ENST00000596163 SETDB2Q96T68 719 aa22.38■■□□□ 1.17
SHKBP1-212ENST00000596163 ERVV-1B6SEH8 477 aa22.37■■□□□ 1.17
SHKBP1-212ENST00000596163 SERPINB2P05120 415 aa22.37■■□□□ 1.17
SHKBP1-212ENST00000596163 TBC1D9BQ66K14 1250 aa22.37■■□□□ 1.17
SHKBP1-212ENST00000596163 DDX21Q9NR30 783 aaKnown RBP eCLIP22.37■■□□□ 1.17
SHKBP1-212ENST00000596163 LAMB4A4D0S4 1761 aa22.37■■□□□ 1.17
SHKBP1-212ENST00000596163 PDIA6Q15084 440 aa22.36■■□□□ 1.17
SHKBP1-212ENST00000596163 NECTIN2Q92692 538 aa22.36■■□□□ 1.17
SHKBP1-212ENST00000596163 GPR162Q16538 588 aa22.35■■□□□ 1.17
SHKBP1-212ENST00000596163 MIER1Q8N108 512 aa22.35■■□□□ 1.17
SHKBP1-212ENST00000596163 DBF4Q9UBU7 674 aaPredicted RBP22.35■■□□□ 1.17
SHKBP1-212ENST00000596163 MAP3K15Q6ZN16 1313 aa22.34■■□□□ 1.17
SHKBP1-212ENST00000596163 ELL2O00472 640 aaPredicted RBP22.33■■□□□ 1.17
SHKBP1-212ENST00000596163 PELP1Q8IZL8 1130 aaKnown RBP22.33■■□□□ 1.17
SHKBP1-212ENST00000596163 TSR2Q969E8 191 aaKnown RBP22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms