RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 CD2APQ9Y5K6 639 aa24.48■■□□□ 1.51
SHKBP1-202ENST00000593764 USP42Q9H9J4 1324 aaKnown RBP24.47■■□□□ 1.51
SHKBP1-202ENST00000593764 STARD3NLO95772 234 aa24.47■■□□□ 1.51
SHKBP1-202ENST00000593764 TEX13AQ9BXU3 409 aaPredicted RBP24.47■■□□□ 1.51
SHKBP1-202ENST00000593764 THUMPD2Q9BTF0 503 aaKnown RBP24.45■■□□□ 1.5
SHKBP1-202ENST00000593764 MIS18AQ9NYP9 233 aa24.45■■□□□ 1.5
SHKBP1-202ENST00000593764 CANXP27824 592 aaKnown RBP24.44■■□□□ 1.5
SHKBP1-202ENST00000593764 FKBP8Q14318 412 aa24.44■■□□□ 1.5
SHKBP1-202ENST00000593764 ADAMTS8Q9UP79 889 aa24.44■■□□□ 1.5
SHKBP1-202ENST00000593764 TMPOP42166 694 aaKnown RBP24.43■■□□□ 1.5
SHKBP1-202ENST00000593764 EIF5P55010 431 aaKnown RBP24.43■■□□□ 1.5
SHKBP1-202ENST00000593764 COL15A1P39059 1388 aa24.42■■□□□ 1.5
SHKBP1-202ENST00000593764 PRAMEF22A3QJZ6 481 aa24.42■■□□□ 1.5
SHKBP1-202ENST00000593764 RIPK4P57078 832 aa24.42■■□□□ 1.5
SHKBP1-202ENST00000593764 WDR43Q15061 677 aaKnown RBP eCLIP24.42■■□□□ 1.5
SHKBP1-202ENST00000593764 CCDC146Q8IYE0 955 aa24.42■■□□□ 1.5
SHKBP1-202ENST00000593764 USP16Q9Y5T5 823 aa24.42■■□□□ 1.5
SHKBP1-202ENST00000593764 A1BGP04217 495 aa24.41■■□□□ 1.5
SHKBP1-202ENST00000593764 USPL1Q5W0Q7 1092 aa24.41■■□□□ 1.5
SHKBP1-202ENST00000593764 NARFQ9UHQ1 456 aa24.41■■□□□ 1.5
SHKBP1-202ENST00000593764 ZPR1O75312 459 aa24.4■■□□□ 1.5
SHKBP1-202ENST00000593764 SNRPA1P09661 255 aaKnown RBP24.4■■□□□ 1.5
SHKBP1-202ENST00000593764 GPR162Q16538 588 aa24.4■■□□□ 1.5
SHKBP1-202ENST00000593764 TM4SF1P30408 202 aa24.39■■□□□ 1.49
SHKBP1-202ENST00000593764 RUNDC1Q96C34 613 aa24.39■■□□□ 1.49
SHKBP1-202ENST00000593764 BCL2L12Q9HB09 334 aa24.39■■□□□ 1.49
SHKBP1-202ENST00000593764 PNISRQ8TF01 805 aaKnown RBP24.38■■□□□ 1.49
SHKBP1-202ENST00000593764 PARP3Q9Y6F1 533 aa24.38■■□□□ 1.49
SHKBP1-202ENST00000593764 YBX3P16989 372 aaKnown RBP eCLIP24.37■■□□□ 1.49
SHKBP1-202ENST00000593764 IL6STP40189 918 aaPredicted RBP24.37■■□□□ 1.49
SHKBP1-202ENST00000593764 DDR1Q08345 913 aa24.37■■□□□ 1.49
SHKBP1-202ENST00000593764 RRP7AQ9Y3A4 280 aaKnown RBP24.37■■□□□ 1.49
SHKBP1-202ENST00000593764 CCDC184Q52MB2 194 aa24.36■■□□□ 1.49
SHKBP1-202ENST00000593764 PELP1Q8IZL8 1130 aaKnown RBP24.35■■□□□ 1.49
SHKBP1-202ENST00000593764 A0A087WZG4 1122 aa24.34■■□□□ 1.49
SHKBP1-202ENST00000593764 POLRMTO00411 1230 aaKnown RBP24.34■■□□□ 1.49
SHKBP1-202ENST00000593764 YY1P25490 414 aa24.34■■□□□ 1.49
SHKBP1-202ENST00000593764 EIF4A1P60842 406 aaKnown RBP24.34■■□□□ 1.49
SHKBP1-202ENST00000593764 NEUROD2Q15784 382 aa24.34■■□□□ 1.49
SHKBP1-202ENST00000593764 C10orf71Q711Q0 1435 aa24.34■■□□□ 1.49
SHKBP1-202ENST00000593764 KDM3BQ7LBC6 1761 aa24.34■■□□□ 1.49
SHKBP1-202ENST00000593764 KIF13BQ9NQT8 1826 aa24.33■■□□□ 1.49
SHKBP1-202ENST00000593764 PIP4K2AP48426 406 aaPredicted RBP24.33■■□□□ 1.49
SHKBP1-202ENST00000593764 NFIXQ14938 502 aa24.33■■□□□ 1.49
SHKBP1-202ENST00000593764 TRIM35Q9UPQ4 493 aa24.33■■□□□ 1.49
SHKBP1-202ENST00000593764 GIGYF1O75420 1035 aaPredicted RBP24.32■■□□□ 1.48
SHKBP1-202ENST00000593764 LMOD3Q0VAK6 560 aa24.32■■□□□ 1.48
SHKBP1-202ENST00000593764 TBC1D2BQ9UPU7 963 aa24.32■■□□□ 1.48
SHKBP1-202ENST00000593764 ZNF330Q9Y3S2 320 aaPredicted RBP24.32■■□□□ 1.48
SHKBP1-202ENST00000593764 NBPF26B4DH59 902 aa24.31■■□□□ 1.48
SHKBP1-202ENST00000593764 TGFB2P61812 414 aa24.31■■□□□ 1.48
SHKBP1-202ENST00000593764 NBPF10Q6P3W6 841 aaKnown RBP24.31■■□□□ 1.48
SHKBP1-202ENST00000593764 NBPF15Q8N660 670 aa24.31■■□□□ 1.48
SHKBP1-202ENST00000593764 PXDNLA1KZ92 1463 aa24.3■■□□□ 1.48
SHKBP1-202ENST00000593764 CAMTA2O94983 1202 aa24.29■■□□□ 1.48
SHKBP1-202ENST00000593764 BABAM1Q9NWV8 329 aa24.29■■□□□ 1.48
SHKBP1-202ENST00000593764 TSPYL4Q9UJ04 414 aa24.29■■□□□ 1.48
SHKBP1-202ENST00000593764 KIAA1551Q9HCM1 1747 aa24.28■■□□□ 1.48
SHKBP1-202ENST00000593764 A0A0G2JLW4 131 aa24.28■■□□□ 1.48
SHKBP1-202ENST00000593764 GRIN3BO60391 1043 aa24.28■■□□□ 1.48
SHKBP1-202ENST00000593764 WWC3Q9ULE0 1092 aa24.28■■□□□ 1.48
SHKBP1-202ENST00000593764 TBC1D9BQ66K14 1250 aa24.27■■□□□ 1.48
SHKBP1-202ENST00000593764 ANP32CO43423 234 aa24.26■■□□□ 1.47
SHKBP1-202ENST00000593764 DPEP1P16444 411 aa24.26■■□□□ 1.47
SHKBP1-202ENST00000593764 KCNA3P22001 575 aa24.26■■□□□ 1.47
SHKBP1-202ENST00000593764 DZIP3Q86Y13 1208 aaKnown RBP24.26■■□□□ 1.47
SHKBP1-202ENST00000593764 CHD4Q14839 1912 aa24.25■■□□□ 1.47
SHKBP1-202ENST00000593764 APAF1O14727 1248 aa24.25■■□□□ 1.47
SHKBP1-202ENST00000593764 SERPINB2P05120 415 aa24.25■■□□□ 1.47
SHKBP1-202ENST00000593764 NPM2Q86SE8 214 aaKnown RBP24.25■■□□□ 1.47
SHKBP1-202ENST00000593764 N4BP2Q86UW6 1770 aaPredicted RBP24.24■■□□□ 1.47
SHKBP1-202ENST00000593764 CHL1O00533 1208 aa24.24■■□□□ 1.47
SHKBP1-202ENST00000593764 BICDL1Q6ZP65 573 aa24.24■■□□□ 1.47
SHKBP1-202ENST00000593764 SCN7AQ01118 1682 aa24.23■■□□□ 1.47
SHKBP1-202ENST00000593764 NRXN2Q9P2S2 1712 aa24.23■■□□□ 1.47
SHKBP1-202ENST00000593764 AFDNP55196 1824 aaKnown RBP24.23■■□□□ 1.47
SHKBP1-202ENST00000593764 LAMB4A4D0S4 1761 aa24.22■■□□□ 1.47
SHKBP1-202ENST00000593764 CLEC4GQ6UXB4 293 aa24.2■■□□□ 1.46
SHKBP1-202ENST00000593764 MRS2Q9HD23 443 aa24.19■■□□□ 1.46
SHKBP1-202ENST00000593764 LAS1LQ9Y4W2 734 aaKnown RBP24.19■■□□□ 1.46
SHKBP1-202ENST00000593764 BCORQ6W2J9 1755 aa24.19■■□□□ 1.46
SHKBP1-202ENST00000593764 CHRNA5P30532 468 aa24.18■■□□□ 1.46
SHKBP1-202ENST00000593764 SETDB2Q96T68 719 aa24.18■■□□□ 1.46
SHKBP1-202ENST00000593764 BCS1LQ9Y276 419 aa24.18■■□□□ 1.46
SHKBP1-202ENST00000593764 RGL2O15211 777 aa24.17■■□□□ 1.46
SHKBP1-202ENST00000593764 PDIA6Q15084 440 aa24.17■■□□□ 1.46
SHKBP1-202ENST00000593764 KRT24Q2M2I5 525 aa24.17■■□□□ 1.46
SHKBP1-202ENST00000593764 NGEFQ8N5V2 710 aa24.17■■□□□ 1.46
SHKBP1-202ENST00000593764 CFAP44Q96MT7 982 aa24.17■■□□□ 1.46
SHKBP1-202ENST00000593764 BRCA1P38398 1863 aaKnown RBP24.17■■□□□ 1.46
SHKBP1-202ENST00000593764 CARMIL3Q8ND23 1372 aa24.16■■□□□ 1.46
SHKBP1-202ENST00000593764 ZNF853P0CG23 659 aa24.16■■□□□ 1.46
SHKBP1-202ENST00000593764 MYL6BP14649 208 aa24.16■■□□□ 1.46
SHKBP1-202ENST00000593764 HLFQ16534 295 aa24.16■■□□□ 1.46
SHKBP1-202ENST00000593764 LRP10Q7Z4F1 713 aa24.16■■□□□ 1.46
SHKBP1-202ENST00000593764 PIM2Q9P1W9 311 aa24.16■■□□□ 1.46
SHKBP1-202ENST00000593764 ERBB4Q15303 1308 aa24.15■■□□□ 1.46
SHKBP1-202ENST00000593764 EIF2S2P20042 333 aaKnown RBP24.15■■□□□ 1.46
SHKBP1-202ENST00000593764 PRR5LQ6MZQ0 368 aa24.15■■□□□ 1.46
SHKBP1-202ENST00000593764 TTLL7Q6ZT98 887 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms