RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PI4KAP2A4QPH2 592 aa24.33■■□□□ 1.48
CLIP3-206ENST00000593074 FRAT2O75474 233 aaPredicted RBP24.33■■□□□ 1.48
CLIP3-206ENST00000593074 PDE1AP54750 535 aa24.33■■□□□ 1.48
CLIP3-206ENST00000593074 PI4KAP1Q8N8J0 262 aa24.33■■□□□ 1.48
CLIP3-206ENST00000593074 SSH3Q8TE77 659 aa24.32■■□□□ 1.48
CLIP3-206ENST00000593074 MRC1P22897 1456 aa24.32■■□□□ 1.48
CLIP3-206ENST00000593074 DCAF5Q96JK2 942 aa24.31■■□□□ 1.48
CLIP3-206ENST00000593074 BCL11AQ9H165 835 aa24.31■■□□□ 1.48
CLIP3-206ENST00000593074 WDR17Q8IZU2 1322 aa24.31■■□□□ 1.48
CLIP3-206ENST00000593074 NFATC2IPQ8NCF5 419 aa24.31■■□□□ 1.48
CLIP3-206ENST00000593074 CYP27B1O15528 508 aa24.3■■□□□ 1.48
CLIP3-206ENST00000593074 HSP90AB1P08238 724 aaKnown RBP24.3■■□□□ 1.48
CLIP3-206ENST00000593074 ZNF790Q6PG37 636 aa24.3■■□□□ 1.48
CLIP3-206ENST00000593074 TOM1L2Q6ZVM7 507 aa24.3■■□□□ 1.48
CLIP3-206ENST00000593074 ANXA1P04083 346 aa24.3■■□□□ 1.48
CLIP3-206ENST00000593074 POLA2Q14181 598 aa24.29■■□□□ 1.48
CLIP3-206ENST00000593074 C5P01031 1676 aa24.28■■□□□ 1.48
CLIP3-206ENST00000593074 CASC1Q6TDU7 716 aa24.28■■□□□ 1.48
CLIP3-206ENST00000593074 SLC39A6Q13433 755 aa24.27■■□□□ 1.48
CLIP3-206ENST00000593074 PROSER3Q2NL68 480 aa24.27■■□□□ 1.48
CLIP3-206ENST00000593074 PRAMEF22A3QJZ6 481 aa24.26■■□□□ 1.47
CLIP3-206ENST00000593074 NBPF7P0C2Y1 421 aaPredicted RBP24.26■■□□□ 1.47
CLIP3-206ENST00000593074 HYPKQ9NX55 129 aa24.26■■□□□ 1.47
CLIP3-206ENST00000593074 PARP4Q9UKK3 1724 aaKnown RBP24.26■■□□□ 1.47
CLIP3-206ENST00000593074 MX1P20591 662 aa24.25■■□□□ 1.47
CLIP3-206ENST00000593074 PPP1R42Q7Z4L9 355 aa24.25■■□□□ 1.47
CLIP3-206ENST00000593074 KSR2Q6VAB6 950 aa24.25■■□□□ 1.47
CLIP3-206ENST00000593074 STAP2Q9UGK3 403 aa24.25■■□□□ 1.47
CLIP3-206ENST00000593074 RAB11FIP3O75154 756 aa24.24■■□□□ 1.47
CLIP3-206ENST00000593074 ALDH1L1O75891 902 aa24.24■■□□□ 1.47
CLIP3-206ENST00000593074 USP26Q9BXU7 913 aa24.24■■□□□ 1.47
CLIP3-206ENST00000593074 DDX21Q9NR30 783 aaKnown RBP eCLIP24.24■■□□□ 1.47
CLIP3-206ENST00000593074 AOX1Q06278 1338 aa24.24■■□□□ 1.47
CLIP3-206ENST00000593074 COL5A2P05997 1499 aaPredicted RBP24.24■■□□□ 1.47
CLIP3-206ENST00000593074 EVA1CP58658 441 aa24.23■■□□□ 1.47
CLIP3-206ENST00000593074 ZCRB1Q8TBF4 217 aaKnown RBP24.23■■□□□ 1.47
CLIP3-206ENST00000593074 CARD10Q9BWT7 1032 aa24.23■■□□□ 1.47
CLIP3-206ENST00000593074 MAP3K2Q9Y2U5 619 aa24.23■■□□□ 1.47
CLIP3-206ENST00000593074 CABP4P57796 275 aa24.23■■□□□ 1.47
CLIP3-206ENST00000593074 SPRYD3Q8NCJ5 442 aa24.23■■□□□ 1.47
CLIP3-206ENST00000593074 CHMP5Q9NZZ3 219 aa24.23■■□□□ 1.47
CLIP3-206ENST00000593074 DDIT3P35638 169 aa24.22■■□□□ 1.47
CLIP3-206ENST00000593074 TTC5Q8N0Z6 440 aa24.22■■□□□ 1.47
CLIP3-206ENST00000593074 NHSL1Q5SYE7 1610 aa24.22■■□□□ 1.47
CLIP3-206ENST00000593074 MTX1Q13505 466 aa24.22■■□□□ 1.47
CLIP3-206ENST00000593074 PDIA6Q15084 440 aa24.22■■□□□ 1.47
CLIP3-206ENST00000593074 SRGAP3O43295 1099 aa24.21■■□□□ 1.47
CLIP3-206ENST00000593074 ABCA3Q99758 1704 aa24.21■■□□□ 1.47
CLIP3-206ENST00000593074 PCDH11XQ9BZA7 1347 aa24.21■■□□□ 1.47
CLIP3-206ENST00000593074 PCDH11YQ9BZA8 1340 aa24.21■■□□□ 1.47
CLIP3-206ENST00000593074 ZNF496Q96IT1 587 aaPredicted RBP24.2■■□□□ 1.47
CLIP3-206ENST00000593074 STRN4Q9NRL3 753 aa24.2■■□□□ 1.47
CLIP3-206ENST00000593074 REC8O95072 547 aa24.2■■□□□ 1.46
CLIP3-206ENST00000593074 ERC2O15083 957 aa24.19■■□□□ 1.46
CLIP3-206ENST00000593074 CD2BP2O95400 341 aaKnown RBP24.19■■□□□ 1.46
CLIP3-206ENST00000593074 DDX58O95786 925 aaKnown RBP24.19■■□□□ 1.46
CLIP3-206ENST00000593074 IL2RBP14784 551 aa24.19■■□□□ 1.46
CLIP3-206ENST00000593074 TSHZ3Q63HK5 1081 aa24.19■■□□□ 1.46
CLIP3-206ENST00000593074 SURF6O75683 361 aaKnown RBP24.19■■□□□ 1.46
CLIP3-206ENST00000593074 SNRPA1P09661 255 aaKnown RBP24.19■■□□□ 1.46
CLIP3-206ENST00000593074 RABEP1Q15276 862 aa24.19■■□□□ 1.46
CLIP3-206ENST00000593074 LARP1Q6PKG0 1096 aaKnown RBP24.18■■□□□ 1.46
CLIP3-206ENST00000593074 FMNL2Q96PY5 1086 aa24.18■■□□□ 1.46
CLIP3-206ENST00000593074 RBM42Q9BTD8 480 aaKnown RBP24.18■■□□□ 1.46
CLIP3-206ENST00000593074 GLI3P10071 1580 aa24.17■■□□□ 1.46
CLIP3-206ENST00000593074 K7ELQ4 463 aaPredicted RBP24.17■■□□□ 1.46
CLIP3-206ENST00000593074 GSE1Q14687 1217 aa24.17■■□□□ 1.46
CLIP3-206ENST00000593074 LINS1Q8NG48 757 aa24.17■■□□□ 1.46
CLIP3-206ENST00000593074 RHPN1Q8TCX5 695 aa24.17■■□□□ 1.46
CLIP3-206ENST00000593074 KIF1BPQ96EK5 621 aa24.17■■□□□ 1.46
CLIP3-206ENST00000593074 HDAC5Q9UQL6 1122 aa24.17■■□□□ 1.46
CLIP3-206ENST00000593074 HSP90AB4PQ58FF6 505 aa24.16■■□□□ 1.46
CLIP3-206ENST00000593074 UTYO14607 1347 aa24.16■■□□□ 1.46
CLIP3-206ENST00000593074 IL1RAPL2Q9NP60 686 aa24.15■■□□□ 1.46
CLIP3-206ENST00000593074 AIMP1Q12904 312 aaKnown RBP24.15■■□□□ 1.46
CLIP3-206ENST00000593074 CWF19L2Q2TBE0 894 aaKnown RBP24.15■■□□□ 1.46
CLIP3-206ENST00000593074 C9orf78Q9NZ63 289 aaPredicted RBP24.15■■□□□ 1.46
CLIP3-206ENST00000593074 ERVV-2B6SEH9 535 aa24.14■■□□□ 1.46
CLIP3-206ENST00000593074 CIZ1Q9ULV3 898 aaPredicted RBP24.14■■□□□ 1.46
CLIP3-206ENST00000593074 LAMB4A4D0S4 1761 aa24.14■■□□□ 1.45
CLIP3-206ENST00000593074 NKX1-1Q15270 411 aaPredicted RBP24.14■■□□□ 1.45
CLIP3-206ENST00000593074 USP16Q9Y5T5 823 aa24.13■■□□□ 1.45
CLIP3-206ENST00000593074 MYL6BP14649 208 aa24.12■■□□□ 1.45
CLIP3-206ENST00000593074 ESYT1Q9BSJ8 1104 aa24.12■■□□□ 1.45
CLIP3-206ENST00000593074 GRM8O00222 908 aa24.12■■□□□ 1.45
CLIP3-206ENST00000593074 RIC3Q7Z5B4 369 aa24.12■■□□□ 1.45
CLIP3-206ENST00000593074 DDX54Q8TDD1 881 aaKnown RBP24.12■■□□□ 1.45
CLIP3-206ENST00000593074 LRP10Q7Z4F1 713 aa24.11■■□□□ 1.45
CLIP3-206ENST00000593074 CHMLP26374 656 aa24.11■■□□□ 1.45
CLIP3-206ENST00000593074 NUTM1Q86Y26 1132 aa24.11■■□□□ 1.45
CLIP3-206ENST00000593074 PI4K2BQ8TCG2 481 aa24.11■■□□□ 1.45
CLIP3-206ENST00000593074 USP42Q9H9J4 1324 aaKnown RBP24.1■■□□□ 1.45
CLIP3-206ENST00000593074 XAGE3Q8WTP9 111 aa24.1■■□□□ 1.45
CLIP3-206ENST00000593074 BTG4Q9NY30 223 aa24.1■■□□□ 1.45
CLIP3-206ENST00000593074 TRIM6-TRIM34B2RNG4 842 aa24.09■■□□□ 1.45
CLIP3-206ENST00000593074 COPS6Q7L5N1 327 aa24.09■■□□□ 1.45
CLIP3-206ENST00000593074 IGKV5-2P06315 115 aa24.09■■□□□ 1.45
CLIP3-206ENST00000593074 UNC5CLQ8IV45 518 aa24.09■■□□□ 1.45
CLIP3-206ENST00000593074 RILPL2Q969X0 211 aa24.09■■□□□ 1.45
CLIP3-206ENST00000593074 UBR2Q8IWV8 1755 aa24.08■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms