RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 SMARCC1Q92922 1105 aaPredicted RBP11.74□□□□□ -0.53
SS18-220ENST00000582092 SOS1Q07889 1333 aaPredicted RBP11.74□□□□□ -0.53
SS18-220ENST00000582092 LY75O60449 1722 aa11.74□□□□□ -0.53
SS18-220ENST00000582092 CYP27B1O15528 508 aa11.73□□□□□ -0.53
SS18-220ENST00000582092 NKX1-1Q15270 411 aaPredicted RBP11.73□□□□□ -0.53
SS18-220ENST00000582092 MPRIPQ6WCQ1 1025 aa11.73□□□□□ -0.53
SS18-220ENST00000582092 PPP1R1BQ9UD71 204 aaPredicted RBP11.73□□□□□ -0.53
SS18-220ENST00000582092 BTBD11A6QL63 1104 aa11.72□□□□□ -0.53
SS18-220ENST00000582092 RLBP1P12271 317 aa11.72□□□□□ -0.53
SS18-220ENST00000582092 TMEM57Q8N5G2 664 aa11.72□□□□□ -0.53
SS18-220ENST00000582092 IL17REQ8NFR9 667 aa11.72□□□□□ -0.53
SS18-220ENST00000582092 TMOD3Q9NYL9 352 aa11.72□□□□□ -0.53
SS18-220ENST00000582092 CCNL1Q9UK58 526 aaPredicted RBP11.72□□□□□ -0.53
SS18-220ENST00000582092 PTPRCP08575 1304 aa11.71□□□□□ -0.53
SS18-220ENST00000582092 SLC4A2P04920 1241 aa11.71□□□□□ -0.53
SS18-220ENST00000582092 PHKG2P15735 406 aa11.71□□□□□ -0.53
SS18-220ENST00000582092 ANO8Q9HCE9 1232 aaPredicted RBP11.71□□□□□ -0.53
SS18-220ENST00000582092 TNNQ9UQP3 1299 aa11.71□□□□□ -0.53
SS18-220ENST00000582092 QSER1Q2KHR3 1735 aa11.7□□□□□ -0.54
SS18-220ENST00000582092 DCAF8L1A6NGE4 600 aa11.7□□□□□ -0.54
SS18-220ENST00000582092 RNMTO43148 476 aaKnown RBP11.7□□□□□ -0.54
SS18-220ENST00000582092 DCAF5Q96JK2 942 aa11.7□□□□□ -0.54
SS18-220ENST00000582092 TFCP2L1Q9NZI6 479 aa11.7□□□□□ -0.54
SS18-220ENST00000582092 ZBTB47Q9UFB7 747 aaPredicted RBP11.7□□□□□ -0.54
SS18-220ENST00000582092 RBM19Q9Y4C8 960 aaKnown RBP11.7□□□□□ -0.54
SS18-220ENST00000582092 ERVV-2B6SEH9 535 aa11.69□□□□□ -0.54
SS18-220ENST00000582092 LGR6Q9HBX8 967 aa11.69□□□□□ -0.54
SS18-220ENST00000582092 CASZ1Q86V15 1759 aa11.69□□□□□ -0.54
SS18-220ENST00000582092 TOGARAM1Q9Y4F4 1720 aa11.69□□□□□ -0.54
SS18-220ENST00000582092 PALLDQ8WX93 1383 aa11.68□□□□□ -0.54
SS18-220ENST00000582092 KDM2BQ8NHM5 1336 aa11.68□□□□□ -0.54
SS18-220ENST00000582092 TAF1LQ8IZX4 1826 aa11.68□□□□□ -0.54
SS18-220ENST00000582092 RGS3P49796 1198 aa11.68□□□□□ -0.54
SS18-220ENST00000582092 KRT24Q2M2I5 525 aa11.68□□□□□ -0.54
SS18-220ENST00000582092 SLC16A10Q8TF71 515 aa11.68□□□□□ -0.54
SS18-220ENST00000582092 LRRC4BQ9NT99 713 aa11.68□□□□□ -0.54
SS18-220ENST00000582092 C5P01031 1676 aa11.68□□□□□ -0.54
SS18-220ENST00000582092 PAPPAQ13219 1627 aa11.68□□□□□ -0.54
SS18-220ENST00000582092 VIRMAQ69YN4 1812 aaKnown RBP11.67□□□□□ -0.54
SS18-220ENST00000582092 IGHDP01880 384 aa11.67□□□□□ -0.54
SS18-220ENST00000582092 EIF2S2P20042 333 aaKnown RBP11.67□□□□□ -0.54
SS18-220ENST00000582092 CABP4P57796 275 aa11.67□□□□□ -0.54
SS18-220ENST00000582092 HDGFL1Q5TGJ6 251 aa11.67□□□□□ -0.54
SS18-220ENST00000582092 FLAD1Q8NFF5 587 aa11.67□□□□□ -0.54
SS18-220ENST00000582092 NECTIN2Q92692 538 aa11.67□□□□□ -0.54
SS18-220ENST00000582092 MTFR1LQ9H019 292 aa11.67□□□□□ -0.54
SS18-220ENST00000582092 ZBTB7AO95365 584 aa11.66□□□□□ -0.54
SS18-220ENST00000582092 HOXB7P09629 217 aa11.66□□□□□ -0.54
SS18-220ENST00000582092 CCT4P50991 539 aaKnown RBP11.66□□□□□ -0.54
SS18-220ENST00000582092 FKBP5Q13451 457 aaPredicted RBP11.66□□□□□ -0.54
SS18-220ENST00000582092 SLC4A10Q6U841 1118 aa11.66□□□□□ -0.54
SS18-220ENST00000582092 PIGBQ92521 554 aa11.66□□□□□ -0.54
SS18-220ENST00000582092 PCDHB15Q9Y5E8 787 aa11.66□□□□□ -0.54
SS18-220ENST00000582092 SCN11AQ9UI33 1791 aa11.66□□□□□ -0.54
SS18-220ENST00000582092 MSH5O43196 834 aa11.65□□□□□ -0.54
SS18-220ENST00000582092 POLD1P28340 1107 aa11.65□□□□□ -0.54
SS18-220ENST00000582092 TTC5Q8N0Z6 440 aa11.65□□□□□ -0.54
SS18-220ENST00000582092 AKT1S1Q96B36 256 aa11.65□□□□□ -0.54
SS18-220ENST00000582092 ZBTB40Q9NUA8 1239 aa11.65□□□□□ -0.54
SS18-220ENST00000582092 ATF5Q9Y2D1 282 aaPredicted RBP11.65□□□□□ -0.54
SS18-220ENST00000582092 CEMIPQ8WUJ3 1361 aa11.65□□□□□ -0.55
SS18-220ENST00000582092 ABCC4O15439 1325 aa11.64□□□□□ -0.55
SS18-220ENST00000582092 LOC102724428A0A0B4J2F2 783 aa11.64□□□□□ -0.55
SS18-220ENST00000582092 ZBTB7BO15156 539 aaPredicted RBP11.64□□□□□ -0.55
SS18-220ENST00000582092 KCNQ4P56696 695 aa11.64□□□□□ -0.55
SS18-220ENST00000582092 SIK1P57059 783 aa11.64□□□□□ -0.55
SS18-220ENST00000582092 EIF4A1P60842 406 aaKnown RBP11.64□□□□□ -0.55
SS18-220ENST00000582092 HDAC1Q13547 482 aaPredicted RBP11.64□□□□□ -0.55
SS18-220ENST00000582092 ZNF827Q17R98 1081 aa11.64□□□□□ -0.55
SS18-220ENST00000582092 INTS3Q68E01 1043 aaKnown RBP11.64□□□□□ -0.55
SS18-220ENST00000582092 AK7Q96M32 723 aa11.64□□□□□ -0.55
SS18-220ENST00000582092 TUBGCP6Q96RT7 1819 aa11.64□□□□□ -0.55
SS18-220ENST00000582092 PDE4AP27815 886 aa11.63□□□□□ -0.55
SS18-220ENST00000582092 ATP6V1AP38606 617 aa11.63□□□□□ -0.55
SS18-220ENST00000582092 ANP32AP39687 249 aaKnown RBP11.63□□□□□ -0.55
SS18-220ENST00000582092 HMMRO75330 724 aa11.62□□□□□ -0.55
SS18-220ENST00000582092 FLIIQ13045 1269 aa11.62□□□□□ -0.55
SS18-220ENST00000582092 RBM42Q9BTD8 480 aaKnown RBP11.62□□□□□ -0.55
SS18-220ENST00000582092 SLC52A2Q9HAB3 445 aa11.62□□□□□ -0.55
SS18-220ENST00000582092 ASAP1Q9ULH1 1129 aa11.62□□□□□ -0.55
SS18-220ENST00000582092 C4BP0C0L5 1744 aa11.62□□□□□ -0.55
SS18-220ENST00000582092 ZNF831Q5JPB2 1677 aa11.62□□□□□ -0.55
SS18-220ENST00000582092 PNPLA7Q6ZV29 1317 aa11.61□□□□□ -0.55
SS18-220ENST00000582092 DDX58O95786 925 aaKnown RBP11.61□□□□□ -0.55
SS18-220ENST00000582092 GNAI3P08754 354 aa11.61□□□□□ -0.55
SS18-220ENST00000582092 GCC1Q96CN9 775 aa11.61□□□□□ -0.55
SS18-220ENST00000582092 PDGFDQ9GZP0 370 aaPredicted RBP11.61□□□□□ -0.55
SS18-220ENST00000582092 ATG3Q9NT62 314 aa11.61□□□□□ -0.55
SS18-220ENST00000582092 DBF4Q9UBU7 674 aaPredicted RBP11.61□□□□□ -0.55
SS18-220ENST00000582092 PDZRN3Q9UPQ7 1066 aa11.61□□□□□ -0.55
SS18-220ENST00000582092 UBR3Q6ZT12 1888 aa11.6□□□□□ -0.55
SS18-220ENST00000582092 FAM161AQ3B820 660 aa11.6□□□□□ -0.55
SS18-220ENST00000582092 RPAP2Q8IXW5 612 aaPredicted RBP11.6□□□□□ -0.55
SS18-220ENST00000582092 NFATC2IPQ8NCF5 419 aa11.6□□□□□ -0.55
SS18-220ENST00000582092 ARXQ96QS3 562 aa11.6□□□□□ -0.55
SS18-220ENST00000582092 HDAC5Q9UQL6 1122 aa11.6□□□□□ -0.55
SS18-220ENST00000582092 KDM6AO15550 1401 aaPredicted RBP11.6□□□□□ -0.55
SS18-220ENST00000582092 SSFA2P28290 1259 aa11.59□□□□□ -0.55
SS18-220ENST00000582092 G2E3Q7L622 706 aa11.59□□□□□ -0.55
SS18-220ENST00000582092 C1orf115Q9H7X2 142 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms