RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 HCN2Q9UL51 889 aa10.88□□□□□ -0.67
SMCHD1-207ENST00000581711 EIF4G2P78344 907 aaKnown RBP eCLIP10.87□□□□□ -0.67
SMCHD1-207ENST00000581711 KLF15Q9UIH9 416 aa10.87□□□□□ -0.67
SMCHD1-207ENST00000581711 DCDC2BA2VCK2 349 aa10.86□□□□□ -0.67
SMCHD1-207ENST00000581711 INHAP05111 366 aa10.86□□□□□ -0.67
SMCHD1-207ENST00000581711 ITGB7P26010 798 aa10.86□□□□□ -0.67
SMCHD1-207ENST00000581711 GDF10P55107 478 aa10.86□□□□□ -0.67
SMCHD1-207ENST00000581711 FCHSD1Q86WN1 690 aa10.86□□□□□ -0.67
SMCHD1-207ENST00000581711 AIDAQ96BJ3 306 aa10.86□□□□□ -0.67
SMCHD1-207ENST00000581711 SIRT1Q96EB6 747 aa10.86□□□□□ -0.67
SMCHD1-207ENST00000581711 NIFKQ9BYG3 293 aaKnown RBP10.86□□□□□ -0.67
SMCHD1-207ENST00000581711 TBC1D2BQ9UPU7 963 aa10.86□□□□□ -0.67
SMCHD1-207ENST00000581711 MAPTP10636 758 aaKnown RBP10.85□□□□□ -0.67
SMCHD1-207ENST00000581711 CD33P20138 364 aa10.85□□□□□ -0.67
SMCHD1-207ENST00000581711 TNP2Q05952 138 aa10.85□□□□□ -0.67
SMCHD1-207ENST00000581711 FAM182BQ5T319 152 aa10.85□□□□□ -0.67
SMCHD1-207ENST00000581711 AVENQ9NQS1 362 aaPredicted RBP10.85□□□□□ -0.67
SMCHD1-207ENST00000581711 CHIC2Q9UKJ5 165 aa10.85□□□□□ -0.67
SMCHD1-207ENST00000581711 BCANQ96GW7 911 aa10.84□□□□□ -0.67
SMCHD1-207ENST00000581711 A0A1W2PNR3 127 aa10.83□□□□□ -0.68
SMCHD1-207ENST00000581711 DOC2BQ14184 412 aa10.83□□□□□ -0.68
SMCHD1-207ENST00000581711 ARSJQ5FYB0 599 aaPredicted RBP10.83□□□□□ -0.68
SMCHD1-207ENST00000581711 SEMA6BQ9H3T3 888 aa10.83□□□□□ -0.68
SMCHD1-207ENST00000581711 KHNYNO15037 678 aaKnown RBP10.82□□□□□ -0.68
SMCHD1-207ENST00000581711 SMTNP53814 917 aa10.82□□□□□ -0.68
SMCHD1-207ENST00000581711 TRIM11Q96F44 468 aa10.82□□□□□ -0.68
SMCHD1-207ENST00000581711 IRF5Q13568 498 aa10.81□□□□□ -0.68
SMCHD1-207ENST00000581711 NBPF1Q3BBV0 1214 aa10.81□□□□□ -0.68
SMCHD1-207ENST00000581711 ZNF295-AS1Q8N0V1 137 aa10.81□□□□□ -0.68
SMCHD1-207ENST00000581711 PCBP4P57723 403 aaKnown RBP10.8□□□□□ -0.68
SMCHD1-207ENST00000581711 ZNF468Q5VIY5 522 aaPredicted RBP10.8□□□□□ -0.68
SMCHD1-207ENST00000581711 PSMG3-AS1Q96PY0 264 aa10.8□□□□□ -0.68
SMCHD1-207ENST00000581711 FAM157BP0CG42 384 aa10.79□□□□□ -0.68
SMCHD1-207ENST00000581711 PLVAPQ9BX97 442 aa10.79□□□□□ -0.68
SMCHD1-207ENST00000581711 SPATA31C1P0DKV0 1188 aa10.78□□□□□ -0.68
SMCHD1-207ENST00000581711 TATP17735 454 aaPredicted RBP10.78□□□□□ -0.68
SMCHD1-207ENST00000581711 GATA4P43694 442 aa10.78□□□□□ -0.68
SMCHD1-207ENST00000581711 ZDHHC3Q9NYG2 299 aa10.78□□□□□ -0.68
SMCHD1-207ENST00000581711 SERTAD1Q9UHV2 236 aa10.78□□□□□ -0.68
SMCHD1-207ENST00000581711 IQSEC3Q9UPP2 1182 aaPredicted RBP10.78□□□□□ -0.68
SMCHD1-207ENST00000581711 BRPF1P55201 1214 aaPredicted RBP10.77□□□□□ -0.69
SMCHD1-207ENST00000581711 ZIC5Q96T25 663 aa10.77□□□□□ -0.69
SMCHD1-207ENST00000581711 PRM3Q9NNZ6 103 aa10.77□□□□□ -0.69
SMCHD1-207ENST00000581711 PRR12Q9ULL5 1215 aa10.77□□□□□ -0.69
SMCHD1-207ENST00000581711 TMEM229AB2RXF0 380 aa10.76□□□□□ -0.69
SMCHD1-207ENST00000581711 VAC14Q08AM6 782 aa10.76□□□□□ -0.69
SMCHD1-207ENST00000581711 MAP7D1Q3KQU3 841 aa10.76□□□□□ -0.69
SMCHD1-207ENST00000581711 ZMYM1Q5SVZ6 1142 aa10.76□□□□□ -0.69
SMCHD1-207ENST00000581711 SLC4A9Q96Q91 983 aa10.76□□□□□ -0.69
SMCHD1-207ENST00000581711 GJA3Q9Y6H8 435 aa10.76□□□□□ -0.69
SMCHD1-207ENST00000581711 USP3Q9Y6I4 520 aa10.76□□□□□ -0.69
SMCHD1-207ENST00000581711 CDK2AP1O14519 115 aa10.75□□□□□ -0.69
SMCHD1-207ENST00000581711 MTFR1Q15390 333 aa10.75□□□□□ -0.69
SMCHD1-207ENST00000581711 PLPP7Q8NBV4 271 aa10.75□□□□□ -0.69
SMCHD1-207ENST00000581711 STRN4Q9NRL3 753 aa10.75□□□□□ -0.69
SMCHD1-207ENST00000581711 A6NJY4 79 aa10.74□□□□□ -0.69
SMCHD1-207ENST00000581711 SAMD5Q5TGI4 173 aa10.74□□□□□ -0.69
SMCHD1-207ENST00000581711 MARK1Q9P0L2 795 aa10.74□□□□□ -0.69
SMCHD1-207ENST00000581711 EFSO43281 561 aa10.73□□□□□ -0.69
SMCHD1-207ENST00000581711 CABP1Q9NZU7 370 aa10.73□□□□□ -0.69
SMCHD1-207ENST00000581711 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.72□□□□□ -0.69
SMCHD1-207ENST00000581711 LAMC2Q13753 1193 aa10.72□□□□□ -0.69
SMCHD1-207ENST00000581711 KRTAP9-2Q9BYQ4 174 aa10.72□□□□□ -0.69
SMCHD1-207ENST00000581711 ELOA3CA0A087WX78 387 aaPredicted RBP10.71□□□□□ -0.69
SMCHD1-207ENST00000581711 ELOA3DA6NLF2 546 aaPredicted RBP10.71□□□□□ -0.69
SMCHD1-207ENST00000581711 RSPO4Q2I0M5 234 aaPredicted RBP10.71□□□□□ -0.69
SMCHD1-207ENST00000581711 ELOA3BQ3SY89 546 aa10.71□□□□□ -0.69
SMCHD1-207ENST00000581711 BICDL1Q6ZP65 573 aa10.71□□□□□ -0.69
SMCHD1-207ENST00000581711 ELOA3Q8NG57 546 aa10.71□□□□□ -0.69
SMCHD1-207ENST00000581711 PARP3Q9Y6F1 533 aa10.71□□□□□ -0.69
SMCHD1-207ENST00000581711 SPDYE3A6NKU9 549 aa10.7□□□□□ -0.7
SMCHD1-207ENST00000581711 MDFIQ99750 246 aa10.7□□□□□ -0.7
SMCHD1-207ENST00000581711 ALAS2P22557 587 aa10.69□□□□□ -0.7
SMCHD1-207ENST00000581711 SYT9Q86SS6 491 aa10.69□□□□□ -0.7
SMCHD1-207ENST00000581711 TXLNAP40222 546 aa10.68□□□□□ -0.7
SMCHD1-207ENST00000581711 PRRT3Q5FWE3 981 aa10.68□□□□□ -0.7
SMCHD1-207ENST00000581711 NKAPLQ5M9Q1 402 aa10.68□□□□□ -0.7
SMCHD1-207ENST00000581711 GDPD2Q9HCC8 539 aa10.67□□□□□ -0.7
SMCHD1-207ENST00000581711 TPSG1Q9NRR2 321 aa10.67□□□□□ -0.7
SMCHD1-207ENST00000581711 PCDHGA11Q9Y5H2 935 aa10.67□□□□□ -0.7
SMCHD1-207ENST00000581711 SEMA3FQ13275 785 aa10.66□□□□□ -0.7
SMCHD1-207ENST00000581711 FOXD4L6Q3SYB3 417 aaPredicted RBP10.66□□□□□ -0.7
SMCHD1-207ENST00000581711 FOXD4L3Q6VB84 417 aaPredicted RBP10.66□□□□□ -0.7
SMCHD1-207ENST00000581711 KRTAP9-6A0A140TA67 174 aa10.65□□□□□ -0.7
SMCHD1-207ENST00000581711 SIN3BO75182 1162 aa10.65□□□□□ -0.7
SMCHD1-207ENST00000581711 APBA3O96018 575 aa10.65□□□□□ -0.7
SMCHD1-207ENST00000581711 ABL2P42684 1182 aa10.65□□□□□ -0.7
SMCHD1-207ENST00000581711 WASHC4Q2M389 1173 aa10.65□□□□□ -0.7
SMCHD1-207ENST00000581711 ZDHHC1Q8WTX9 485 aa10.65□□□□□ -0.7
SMCHD1-207ENST00000581711 SCO2A0A1W2PP80 73 aa10.64□□□□□ -0.71
SMCHD1-207ENST00000581711 ADARB2-AS1A8MUL3 147 aa10.64□□□□□ -0.71
SMCHD1-207ENST00000581711 M0R082 166 aa10.64□□□□□ -0.71
SMCHD1-207ENST00000581711 LRRC69Q6ZNQ3 347 aa10.64□□□□□ -0.71
SMCHD1-207ENST00000581711 ZNF417Q8TAU3 575 aa10.64□□□□□ -0.71
SMCHD1-207ENST00000581711 ZNF587Q96SQ5 575 aaPredicted RBP10.64□□□□□ -0.71
SMCHD1-207ENST00000581711 SCHIP1Q9P0W5 487 aaPredicted RBP10.64□□□□□ -0.71
SMCHD1-207ENST00000581711 FAM229AH3BQW9 127 aa10.63□□□□□ -0.71
SMCHD1-207ENST00000581711 BACH1O14867 736 aa10.63□□□□□ -0.71
SMCHD1-207ENST00000581711 COL9A3Q14050 684 aaPredicted RBP10.63□□□□□ -0.71
SMCHD1-207ENST00000581711 L3MBTL2Q969R5 705 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms