RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 MMP10P09238 476 aa19.62■□□□□ 0.73
SS18-212ENST00000579061 CHD4Q14839 1912 aa19.62■□□□□ 0.73
SS18-212ENST00000579061 KIF13BQ9NQT8 1826 aa19.62■□□□□ 0.73
SS18-212ENST00000579061 COL15A1P39059 1388 aa19.61■□□□□ 0.73
SS18-212ENST00000579061 ZPR1O75312 459 aa19.6■□□□□ 0.73
SS18-212ENST00000579061 WDR43Q15061 677 aaKnown RBP eCLIP19.6■□□□□ 0.73
SS18-212ENST00000579061 PNISRQ8TF01 805 aaKnown RBP19.6■□□□□ 0.73
SS18-212ENST00000579061 SRP68Q9UHB9 627 aaKnown RBP19.6■□□□□ 0.73
SS18-212ENST00000579061 NARFQ9UHQ1 456 aa19.6■□□□□ 0.73
SS18-212ENST00000579061 EIF5P55010 431 aaKnown RBP19.59■□□□□ 0.73
SS18-212ENST00000579061 GPR162Q16538 588 aa19.59■□□□□ 0.73
SS18-212ENST00000579061 KDM3BQ7LBC6 1761 aa19.59■□□□□ 0.73
SS18-212ENST00000579061 A0A087WZG4 1122 aa19.58■□□□□ 0.72
SS18-212ENST00000579061 SNRPA1P09661 255 aaKnown RBP19.58■□□□□ 0.72
SS18-212ENST00000579061 CANXP27824 592 aaKnown RBP19.58■□□□□ 0.72
SS18-212ENST00000579061 PARP3Q9Y6F1 533 aa19.58■□□□□ 0.72
SS18-212ENST00000579061 IL6STP40189 918 aaPredicted RBP19.57■□□□□ 0.72
SS18-212ENST00000579061 TMPOP42166 694 aaKnown RBP19.57■□□□□ 0.72
SS18-212ENST00000579061 LMOD3Q0VAK6 560 aa19.57■□□□□ 0.72
SS18-212ENST00000579061 FKBP8Q14318 412 aa19.57■□□□□ 0.72
SS18-212ENST00000579061 RIPK4P57078 832 aa19.56■□□□□ 0.72
SS18-212ENST00000579061 USPL1Q5W0Q7 1092 aa19.56■□□□□ 0.72
SS18-212ENST00000579061 RUNDC1Q96C34 613 aa19.56■□□□□ 0.72
SS18-212ENST00000579061 YY1P25490 414 aa19.55■□□□□ 0.72
SS18-212ENST00000579061 TM4SF1P30408 202 aa19.55■□□□□ 0.72
SS18-212ENST00000579061 C10orf71Q711Q0 1435 aa19.55■□□□□ 0.72
SS18-212ENST00000579061 ADAMTS8Q9UP79 889 aa19.55■□□□□ 0.72
SS18-212ENST00000579061 USP16Q9Y5T5 823 aa19.55■□□□□ 0.72
SS18-212ENST00000579061 A1BGP04217 495 aa19.54■□□□□ 0.72
SS18-212ENST00000579061 LAMB4A4D0S4 1761 aa19.54■□□□□ 0.72
SS18-212ENST00000579061 KIAA1551Q9HCM1 1747 aa19.54■□□□□ 0.72
SS18-212ENST00000579061 GRIN3BO60391 1043 aa19.53■□□□□ 0.72
SS18-212ENST00000579061 TGFB2P61812 414 aa19.53■□□□□ 0.72
SS18-212ENST00000579061 PELP1Q8IZL8 1130 aaKnown RBP19.53■□□□□ 0.72
SS18-212ENST00000579061 THUMPD2Q9BTF0 503 aaKnown RBP19.53■□□□□ 0.72
SS18-212ENST00000579061 BCL2L12Q9HB09 334 aa19.53■□□□□ 0.72
SS18-212ENST00000579061 BABAM1Q9NWV8 329 aa19.53■□□□□ 0.72
SS18-212ENST00000579061 MIS18AQ9NYP9 233 aa19.53■□□□□ 0.72
SS18-212ENST00000579061 UTRNP46939 3433 aa19.53■□□□□ 0.72
SS18-212ENST00000579061 SCN7AQ01118 1682 aa19.52■□□□□ 0.72
SS18-212ENST00000579061 GOLGB1Q14789 3259 aaKnown RBP19.52■□□□□ 0.72
SS18-212ENST00000579061 DDR1Q08345 913 aa19.52■□□□□ 0.72
SS18-212ENST00000579061 NPM2Q86SE8 214 aaKnown RBP19.52■□□□□ 0.72
SS18-212ENST00000579061 CCDC146Q8IYE0 955 aa19.52■□□□□ 0.72
SS18-212ENST00000579061 NRXN2Q9P2S2 1712 aa19.51■□□□□ 0.71
SS18-212ENST00000579061 AFDNP55196 1824 aaKnown RBP19.51■□□□□ 0.71
SS18-212ENST00000579061 PRAMEF22A3QJZ6 481 aa19.51■□□□□ 0.71
SS18-212ENST00000579061 POLRMTO00411 1230 aaKnown RBP19.51■□□□□ 0.71
SS18-212ENST00000579061 YBX3P16989 372 aaKnown RBP eCLIP19.51■□□□□ 0.71
SS18-212ENST00000579061 EIF4A1P60842 406 aaKnown RBP19.51■□□□□ 0.71
SS18-212ENST00000579061 N4BP2Q86UW6 1770 aaPredicted RBP19.5■□□□□ 0.71
SS18-212ENST00000579061 PXDNLA1KZ92 1463 aa19.5■□□□□ 0.71
SS18-212ENST00000579061 NFIXQ14938 502 aa19.5■□□□□ 0.71
SS18-212ENST00000579061 BCORQ6W2J9 1755 aa19.49■□□□□ 0.71
SS18-212ENST00000579061 GIGYF1O75420 1035 aaPredicted RBP19.49■□□□□ 0.71
SS18-212ENST00000579061 BRCA1P38398 1863 aaKnown RBP19.48■□□□□ 0.71
SS18-212ENST00000579061 TSPYL4Q9UJ04 414 aa19.48■□□□□ 0.71
SS18-212ENST00000579061 TBC1D2BQ9UPU7 963 aa19.48■□□□□ 0.71
SS18-212ENST00000579061 RRP7AQ9Y3A4 280 aaKnown RBP19.48■□□□□ 0.71
SS18-212ENST00000579061 ZNF330Q9Y3S2 320 aaPredicted RBP19.48■□□□□ 0.71
SS18-212ENST00000579061 NEUROD2Q15784 382 aa19.47■□□□□ 0.71
SS18-212ENST00000579061 TRIM35Q9UPQ4 493 aa19.47■□□□□ 0.71
SS18-212ENST00000579061 NBPF26B4DH59 902 aa19.46■□□□□ 0.71
SS18-212ENST00000579061 RGL2O15211 777 aa19.46■□□□□ 0.71
SS18-212ENST00000579061 ANP32CO43423 234 aa19.46■□□□□ 0.71
SS18-212ENST00000579061 CAMTA2O94983 1202 aa19.46■□□□□ 0.71
SS18-212ENST00000579061 NBPF10Q6P3W6 841 aaKnown RBP19.46■□□□□ 0.71
SS18-212ENST00000579061 DZIP3Q86Y13 1208 aaKnown RBP19.46■□□□□ 0.71
SS18-212ENST00000579061 NBPF15Q8N660 670 aa19.46■□□□□ 0.71
SS18-212ENST00000579061 SERPINB2P05120 415 aa19.45■□□□□ 0.7
SS18-212ENST00000579061 CLEC4GQ6UXB4 293 aa19.45■□□□□ 0.7
SS18-212ENST00000579061 A0A0G2JLW4 131 aa19.44■□□□□ 0.7
SS18-212ENST00000579061 DPEP1P16444 411 aa19.44■□□□□ 0.7
SS18-212ENST00000579061 PIP4K2AP48426 406 aaPredicted RBP19.44■□□□□ 0.7
SS18-212ENST00000579061 TBC1D9BQ66K14 1250 aa19.44■□□□□ 0.7
SS18-212ENST00000579061 CHL1O00533 1208 aa19.43■□□□□ 0.7
SS18-212ENST00000579061 ERBB4Q15303 1308 aa19.43■□□□□ 0.7
SS18-212ENST00000579061 ARFGEF1Q9Y6D6 1849 aa19.42■□□□□ 0.7
SS18-212ENST00000579061 KCNA3P22001 575 aa19.42■□□□□ 0.7
SS18-212ENST00000579061 ZNF652Q9Y2D9 606 aa19.42■□□□□ 0.7
SS18-212ENST00000579061 CARMIL3Q8ND23 1372 aa19.42■□□□□ 0.7
SS18-212ENST00000579061 APAF1O14727 1248 aa19.41■□□□□ 0.7
SS18-212ENST00000579061 CCDC184Q52MB2 194 aa19.41■□□□□ 0.7
SS18-212ENST00000579061 BICDL1Q6ZP65 573 aa19.41■□□□□ 0.7
SS18-212ENST00000579061 SETDB2Q96T68 719 aa19.41■□□□□ 0.7
SS18-212ENST00000579061 PIM2Q9P1W9 311 aa19.41■□□□□ 0.7
SS18-212ENST00000579061 DLEC1Q9Y238 1755 aa19.39■□□□□ 0.7
SS18-212ENST00000579061 CFAP44Q96MT7 982 aa19.39■□□□□ 0.69
SS18-212ENST00000579061 WWC3Q9ULE0 1092 aa19.39■□□□□ 0.69
SS18-212ENST00000579061 PDZRN3Q9UPQ7 1066 aa19.39■□□□□ 0.69
SS18-212ENST00000579061 BCS1LQ9Y276 419 aa19.39■□□□□ 0.69
SS18-212ENST00000579061 ERVV-1B6SEH8 477 aa19.38■□□□□ 0.69
SS18-212ENST00000579061 NUP98P52948 1817 aa19.38■□□□□ 0.69
SS18-212ENST00000579061 CALD1Q05682 793 aaKnown RBP19.38■□□□□ 0.69
SS18-212ENST00000579061 ANKRD31Q8N7Z5 1873 aa19.38■□□□□ 0.69
SS18-212ENST00000579061 ZNF784Q8NCA9 323 aaPredicted RBP19.37■□□□□ 0.69
SS18-212ENST00000579061 MRS2Q9HD23 443 aa19.37■□□□□ 0.69
SS18-212ENST00000579061 HOXB7P09629 217 aa19.36■□□□□ 0.69
SS18-212ENST00000579061 CHRNA5P30532 468 aa19.36■□□□□ 0.69
SS18-212ENST00000579061 DALRD3Q5D0E6 543 aaKnown RBP19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms