RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 DDX21Q9NR30 783 aaKnown RBP eCLIP20.65■□□□□ 0.9
SS18-211ENST00000578954 CHPF2Q9P2E5 772 aa20.65■□□□□ 0.9
SS18-211ENST00000578954 PTPRCP08575 1304 aa20.64■□□□□ 0.89
SS18-211ENST00000578954 ZKSCAN2Q63HK3 967 aa20.64■□□□□ 0.89
SS18-211ENST00000578954 DNAJC10Q8IXB1 793 aa20.64■□□□□ 0.89
SS18-211ENST00000578954 NOB1Q9ULX3 412 aaKnown RBP20.64■□□□□ 0.89
SS18-211ENST00000578954 RREB1Q92766 1687 aa20.64■□□□□ 0.89
SS18-211ENST00000578954 IPO8O15397 1037 aaKnown RBP20.63■□□□□ 0.89
SS18-211ENST00000578954 PLIN1O60240 522 aa20.63■□□□□ 0.89
SS18-211ENST00000578954 TRIM37O94972 964 aa20.63■□□□□ 0.89
SS18-211ENST00000578954 PDE3AQ14432 1141 aa20.63■□□□□ 0.89
SS18-211ENST00000578954 LRP10Q7Z4F1 713 aa20.63■□□□□ 0.89
SS18-211ENST00000578954 NECTIN2Q92692 538 aa20.63■□□□□ 0.89
SS18-211ENST00000578954 COL5A3P25940 1745 aaPredicted RBP20.63■□□□□ 0.89
SS18-211ENST00000578954 TNS1Q9HBL0 1735 aaKnown RBP20.62■□□□□ 0.89
SS18-211ENST00000578954 CYP19A1P11511 503 aaPredicted RBP20.62■□□□□ 0.89
SS18-211ENST00000578954 ATF7IPQ6VMQ6 1270 aa20.62■□□□□ 0.89
SS18-211ENST00000578954 HYPKQ9NX55 129 aa20.62■□□□□ 0.89
SS18-211ENST00000578954 STARD3NLO95772 234 aa20.61■□□□□ 0.89
SS18-211ENST00000578954 TRIM27P14373 513 aa20.61■□□□□ 0.89
SS18-211ENST00000578954 FLIIQ13045 1269 aa20.61■□□□□ 0.89
SS18-211ENST00000578954 PROSER3Q2NL68 480 aa20.61■□□□□ 0.89
SS18-211ENST00000578954 G2E3Q7L622 706 aa20.61■□□□□ 0.89
SS18-211ENST00000578954 FRAT1Q92837 279 aaPredicted RBP20.61■□□□□ 0.89
SS18-211ENST00000578954 RGPD3A6NKT7 1758 aaPredicted RBP20.6■□□□□ 0.89
SS18-211ENST00000578954 RGPD4Q7Z3J3 1758 aa20.6■□□□□ 0.89
SS18-211ENST00000578954 ATP6V1AP38606 617 aa20.6■□□□□ 0.89
SS18-211ENST00000578954 ITPK1Q13572 414 aa20.6■□□□□ 0.89
SS18-211ENST00000578954 API5Q9BZZ5 524 aaKnown RBP20.6■□□□□ 0.89
SS18-211ENST00000578954 NBPF26B4DH59 902 aa20.59■□□□□ 0.89
SS18-211ENST00000578954 MS4A1P11836 297 aa20.59■□□□□ 0.89
SS18-211ENST00000578954 CANXP27824 592 aaKnown RBP20.59■□□□□ 0.89
SS18-211ENST00000578954 NBPF14Q5TI25 921 aa20.59■□□□□ 0.89
SS18-211ENST00000578954 NBPF10Q6P3W6 841 aaKnown RBP20.59■□□□□ 0.89
SS18-211ENST00000578954 NBPF15Q8N660 670 aa20.59■□□□□ 0.89
SS18-211ENST00000578954 EP400Q96L91 3159 aa20.58■□□□□ 0.89
SS18-211ENST00000578954 ABCC4O15439 1325 aa20.58■□□□□ 0.89
SS18-211ENST00000578954 PHAXQ9H814 394 aaKnown RBP20.58■□□□□ 0.89
SS18-211ENST00000578954 PLSCR1O15162 318 aa20.57■□□□□ 0.88
SS18-211ENST00000578954 ANXA1P04083 346 aa20.57■□□□□ 0.88
SS18-211ENST00000578954 A1BGP04217 495 aa20.57■□□□□ 0.88
SS18-211ENST00000578954 NEFLP07196 543 aa20.57■□□□□ 0.88
SS18-211ENST00000578954 C20orf194Q5TEA3 1177 aa20.57■□□□□ 0.88
SS18-211ENST00000578954 DZIP1LQ8IYY4 767 aaKnown RBP20.57■□□□□ 0.88
SS18-211ENST00000578954 TNNQ9UQP3 1299 aa20.57■□□□□ 0.88
SS18-211ENST00000578954 TAF1LQ8IZX4 1826 aa20.57■□□□□ 0.88
SS18-211ENST00000578954 PXDNLA1KZ92 1463 aa20.56■□□□□ 0.88
SS18-211ENST00000578954 CNTNAP4Q9C0A0 1308 aa20.56■□□□□ 0.88
SS18-211ENST00000578954 SLC27A3Q5K4L6 730 aa20.56■□□□□ 0.88
SS18-211ENST00000578954 CCNL1Q9UK58 526 aaPredicted RBP20.56■□□□□ 0.88
SS18-211ENST00000578954 MYH14Q7Z406 1995 aaKnown RBP20.55■□□□□ 0.88
SS18-211ENST00000578954 RLBP1P12271 317 aa20.55■□□□□ 0.88
SS18-211ENST00000578954 INTS5Q6P9B9 1019 aaKnown RBP20.55■□□□□ 0.88
SS18-211ENST00000578954 N4BP2Q86UW6 1770 aaPredicted RBP20.54■□□□□ 0.88
SS18-211ENST00000578954 CRKLP46109 303 aaKnown RBP20.54■□□□□ 0.88
SS18-211ENST00000578954 FKBP5Q13451 457 aaPredicted RBP20.54■□□□□ 0.88
SS18-211ENST00000578954 RC3H1Q5TC82 1133 aaKnown RBP20.54■□□□□ 0.88
SS18-211ENST00000578954 LINC00116Q8NCU8 138 aa20.54■□□□□ 0.88
SS18-211ENST00000578954 CCDC87Q9NVE4 849 aa20.54■□□□□ 0.88
SS18-211ENST00000578954 ZBTB1Q9Y2K1 713 aa20.54■□□□□ 0.88
SS18-211ENST00000578954 MYL6BP14649 208 aa20.53■□□□□ 0.88
SS18-211ENST00000578954 IL6STP40189 918 aaPredicted RBP20.53■□□□□ 0.88
SS18-211ENST00000578954 ERICH6BQ5W0A0 696 aa20.53■□□□□ 0.88
SS18-211ENST00000578954 PANK1Q8TE04 598 aa20.53■□□□□ 0.88
SS18-211ENST00000578954 ADCY9O60503 1353 aa20.53■□□□□ 0.88
SS18-211ENST00000578954 HMGB2P26583 209 aaKnown RBP20.52■□□□□ 0.88
SS18-211ENST00000578954 PIP4K2AP48426 406 aaPredicted RBP20.52■□□□□ 0.88
SS18-211ENST00000578954 FTSJ3Q8IY81 847 aaKnown RBP20.52■□□□□ 0.88
SS18-211ENST00000578954 XAGE3Q8WTP9 111 aa20.52■□□□□ 0.88
SS18-211ENST00000578954 CLUAP1Q96AJ1 413 aa20.52■□□□□ 0.88
SS18-211ENST00000578954 C4BP0C0L5 1744 aa20.51■□□□□ 0.87
SS18-211ENST00000578954 DDX58O95786 925 aaKnown RBP20.51■□□□□ 0.87
SS18-211ENST00000578954 APBA3O96018 575 aa20.51■□□□□ 0.87
SS18-211ENST00000578954 EIF5P55010 431 aaKnown RBP20.51■□□□□ 0.87
SS18-211ENST00000578954 IRX6P78412 446 aaPredicted RBP20.51■□□□□ 0.87
SS18-211ENST00000578954 INTS3Q68E01 1043 aaKnown RBP20.51■□□□□ 0.87
SS18-211ENST00000578954 COPS6Q7L5N1 327 aa20.51■□□□□ 0.87
SS18-211ENST00000578954 LRRC4BQ9NT99 713 aa20.51■□□□□ 0.87
SS18-211ENST00000578954 ATP10DQ9P241 1426 aa20.51■□□□□ 0.87
SS18-211ENST00000578954 MVPQ14764 893 aaKnown RBP20.5■□□□□ 0.87
SS18-211ENST00000578954 TXNRD1Q16881 649 aa20.5■□□□□ 0.87
SS18-211ENST00000578954 KSR2Q6VAB6 950 aa20.5■□□□□ 0.87
SS18-211ENST00000578954 PROM2Q8N271 834 aa20.5■□□□□ 0.87
SS18-211ENST00000578954 TMEM57Q8N5G2 664 aa20.5■□□□□ 0.87
SS18-211ENST00000578954 CRBNQ96SW2 442 aa20.5■□□□□ 0.87
SS18-211ENST00000578954 IBTKQ9P2D0 1353 aaPredicted RBP20.49■□□□□ 0.87
SS18-211ENST00000578954 PI4KAP2A4QPH2 592 aa20.49■□□□□ 0.87
SS18-211ENST00000578954 KCNQ4P56696 695 aa20.49■□□□□ 0.87
SS18-211ENST00000578954 FKBP8Q14318 412 aa20.49■□□□□ 0.87
SS18-211ENST00000578954 PI4KAP1Q8N8J0 262 aa20.49■□□□□ 0.87
SS18-211ENST00000578954 DNAAF4Q8WXU2 420 aa20.49■□□□□ 0.87
SS18-211ENST00000578954 NUP188Q5SRE5 1749 aa20.49■□□□□ 0.87
SS18-211ENST00000578954 F6X3S4 739 aa20.48■□□□□ 0.87
SS18-211ENST00000578954 PLBD2Q8NHP8 589 aa20.48■□□□□ 0.87
SS18-211ENST00000578954 COG6Q9Y2V7 657 aa20.48■□□□□ 0.87
SS18-211ENST00000578954 ARFGEF2Q9Y6D5 1785 aa20.47■□□□□ 0.87
SS18-211ENST00000578954 CCT4P50991 539 aaKnown RBP20.47■□□□□ 0.87
SS18-211ENST00000578954 AIMP1Q12904 312 aaKnown RBP20.47■□□□□ 0.87
SS18-211ENST00000578954 TTLL7Q6ZT98 887 aa20.47■□□□□ 0.87
SS18-211ENST00000578954 ANKRD13DQ6ZTN6 518 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms