RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 CHPF2Q9P2E5 772 aa19.43■□□□□ 0.7
SS18-206ENST00000577572 ZNF831Q5JPB2 1677 aa19.43■□□□□ 0.7
SS18-206ENST00000577572 KCNQ2O43526 872 aa19.42■□□□□ 0.7
SS18-206ENST00000577572 POTEAQ6S8J7 498 aa19.42■□□□□ 0.7
SS18-206ENST00000577572 USP16Q9Y5T5 823 aa19.42■□□□□ 0.7
SS18-206ENST00000577572 CICQ96RK0 1608 aaPredicted RBP19.42■□□□□ 0.7
SS18-206ENST00000577572 ABCC4O15439 1325 aa19.42■□□□□ 0.7
SS18-206ENST00000577572 PALLDQ8WX93 1383 aa19.42■□□□□ 0.7
SS18-206ENST00000577572 LAMB4A4D0S4 1761 aa19.42■□□□□ 0.7
SS18-206ENST00000577572 LOC102724428A0A0B4J2F2 783 aa19.41■□□□□ 0.7
SS18-206ENST00000577572 SIK1P57059 783 aa19.41■□□□□ 0.7
SS18-206ENST00000577572 PDIA6Q15084 440 aa19.41■□□□□ 0.7
SS18-206ENST00000577572 RBM42Q9BTD8 480 aaKnown RBP19.41■□□□□ 0.7
SS18-206ENST00000577572 PRAMEF22A3QJZ6 481 aa19.4■□□□□ 0.7
SS18-206ENST00000577572 TCERG1O14776 1098 aaKnown RBP19.4■□□□□ 0.7
SS18-206ENST00000577572 DDX58O95786 925 aaKnown RBP19.4■□□□□ 0.7
SS18-206ENST00000577572 DDX19BQ9UMR2 479 aa19.4■□□□□ 0.7
SS18-206ENST00000577572 RGS12O14924 1447 aa19.4■□□□□ 0.7
SS18-206ENST00000577572 MVPQ14764 893 aaKnown RBP19.39■□□□□ 0.69
SS18-206ENST00000577572 C20orf194Q5TEA3 1177 aa19.39■□□□□ 0.69
SS18-206ENST00000577572 INTS3Q68E01 1043 aaKnown RBP19.39■□□□□ 0.69
SS18-206ENST00000577572 PXDNLA1KZ92 1463 aa19.38■□□□□ 0.69
SS18-206ENST00000577572 CCT4P50991 539 aaKnown RBP19.38■□□□□ 0.69
SS18-206ENST00000577572 FKBP5Q13451 457 aaPredicted RBP19.38■□□□□ 0.69
SS18-206ENST00000577572 ILDR1Q86SU0 546 aaPredicted RBP19.38■□□□□ 0.69
SS18-206ENST00000577572 NECTIN2Q92692 538 aa19.38■□□□□ 0.69
SS18-206ENST00000577572 IBTKQ9P2D0 1353 aaPredicted RBP19.38■□□□□ 0.69
SS18-206ENST00000577572 C5P01031 1676 aa19.37■□□□□ 0.69
SS18-206ENST00000577572 CYP19A1P11511 503 aaPredicted RBP19.37■□□□□ 0.69
SS18-206ENST00000577572 G2E3Q7L622 706 aa19.37■□□□□ 0.69
SS18-206ENST00000577572 LRP10Q7Z4F1 713 aa19.37■□□□□ 0.69
SS18-206ENST00000577572 DNAJC10Q8IXB1 793 aa19.37■□□□□ 0.69
SS18-206ENST00000577572 PANK1Q8TE04 598 aa19.37■□□□□ 0.69
SS18-206ENST00000577572 SLC4A9Q96Q91 983 aa19.37■□□□□ 0.69
SS18-206ENST00000577572 CRBNQ96SW2 442 aa19.37■□□□□ 0.69
SS18-206ENST00000577572 PPP4R2Q9NY27 417 aa19.37■□□□□ 0.69
SS18-206ENST00000577572 RLBP1P12271 317 aa19.36■□□□□ 0.69
SS18-206ENST00000577572 ATP6V1AP38606 617 aa19.36■□□□□ 0.69
SS18-206ENST00000577572 IRX6P78412 446 aaPredicted RBP19.36■□□□□ 0.69
SS18-206ENST00000577572 BRWD3Q6RI45 1802 aa19.35■□□□□ 0.69
SS18-206ENST00000577572 KSR2Q6VAB6 950 aa19.35■□□□□ 0.69
SS18-206ENST00000577572 CLUAP1Q96AJ1 413 aa19.35■□□□□ 0.69
SS18-206ENST00000577572 PHAXQ9H814 394 aaKnown RBP19.35■□□□□ 0.69
SS18-206ENST00000577572 SBF2Q86WG5 1849 aa19.35■□□□□ 0.69
SS18-206ENST00000577572 FAM182BQ5T319 152 aa19.34■□□□□ 0.69
SS18-206ENST00000577572 TMEM57Q8N5G2 664 aa19.34■□□□□ 0.69
SS18-206ENST00000577572 EXOC6Q8TAG9 804 aa19.34■□□□□ 0.69
SS18-206ENST00000577572 COG6Q9Y2V7 657 aa19.34■□□□□ 0.69
SS18-206ENST00000577572 KAT6BQ8WYB5 2073 aa19.33■□□□□ 0.69
SS18-206ENST00000577572 NBPF26B4DH59 902 aa19.33■□□□□ 0.68
SS18-206ENST00000577572 IL6STP40189 918 aaPredicted RBP19.33■□□□□ 0.68
SS18-206ENST00000577572 PROSER3Q2NL68 480 aa19.33■□□□□ 0.68
SS18-206ENST00000577572 SLC27A3Q5K4L6 730 aa19.33■□□□□ 0.68
SS18-206ENST00000577572 RC3H1Q5TC82 1133 aaKnown RBP19.33■□□□□ 0.68
SS18-206ENST00000577572 NBPF14Q5TI25 921 aa19.33■□□□□ 0.68
SS18-206ENST00000577572 NBPF10Q6P3W6 841 aaKnown RBP19.33■□□□□ 0.68
SS18-206ENST00000577572 ITPRIPQ8IWB1 547 aa19.33■□□□□ 0.68
SS18-206ENST00000577572 NBPF15Q8N660 670 aa19.33■□□□□ 0.68
SS18-206ENST00000577572 DNAAF4Q8WXU2 420 aa19.33■□□□□ 0.68
SS18-206ENST00000577572 ATP10DQ9P241 1426 aa19.33■□□□□ 0.68
SS18-206ENST00000577572 BTAF1O14981 1849 aa19.32■□□□□ 0.68
SS18-206ENST00000577572 PLSCR1O15162 318 aa19.32■□□□□ 0.68
SS18-206ENST00000577572 A1BGP04217 495 aa19.32■□□□□ 0.68
SS18-206ENST00000577572 CCDC87Q9NVE4 849 aa19.32■□□□□ 0.68
SS18-206ENST00000577572 CNTNAP4Q9C0A0 1308 aa19.31■□□□□ 0.68
SS18-206ENST00000577572 PI4KAP2A4QPH2 592 aa19.31■□□□□ 0.68
SS18-206ENST00000577572 RGL2O15211 777 aa19.31■□□□□ 0.68
SS18-206ENST00000577572 MYL6BP14649 208 aa19.31■□□□□ 0.68
SS18-206ENST00000577572 ANKRD13DQ6ZTN6 518 aa19.31■□□□□ 0.68
SS18-206ENST00000577572 COPS6Q7L5N1 327 aa19.31■□□□□ 0.68
SS18-206ENST00000577572 PI4KAP1Q8N8J0 262 aa19.31■□□□□ 0.68
SS18-206ENST00000577572 PLBD2Q8NHP8 589 aa19.31■□□□□ 0.68
SS18-206ENST00000577572 XAGE3Q8WTP9 111 aa19.31■□□□□ 0.68
SS18-206ENST00000577572 TNNQ9UQP3 1299 aa19.31■□□□□ 0.68
SS18-206ENST00000577572 TJP1Q07157 1748 aa19.31■□□□□ 0.68
SS18-206ENST00000577572 ITPK1Q13572 414 aa19.3■□□□□ 0.68
SS18-206ENST00000577572 NPM2Q86SE8 214 aaKnown RBP19.3■□□□□ 0.68
SS18-206ENST00000577572 ZBTB7BO15156 539 aaPredicted RBP19.29■□□□□ 0.68
SS18-206ENST00000577572 ALDH1L1O75891 902 aa19.29■□□□□ 0.68
SS18-206ENST00000577572 TRIM37O94972 964 aa19.29■□□□□ 0.68
SS18-206ENST00000577572 ANXA1P04083 346 aa19.29■□□□□ 0.68
SS18-206ENST00000577572 PTF1AQ7RTS3 328 aa19.29■□□□□ 0.68
SS18-206ENST00000577572 ZBTB40Q9NUA8 1239 aa19.29■□□□□ 0.68
SS18-206ENST00000577572 CCNL1Q9UK58 526 aaPredicted RBP19.29■□□□□ 0.68
SS18-206ENST00000577572 HDAC5Q9UQL6 1122 aa19.29■□□□□ 0.68
SS18-206ENST00000577572 ADCY9O60503 1353 aa19.29■□□□□ 0.68
SS18-206ENST00000577572 RREB1Q92766 1687 aa19.28■□□□□ 0.68
SS18-206ENST00000577572 CRKLP46109 303 aaKnown RBP19.28■□□□□ 0.68
SS18-206ENST00000577572 EIF5P55010 431 aaKnown RBP19.28■□□□□ 0.68
SS18-206ENST00000577572 NEXNQ0ZGT2 675 aa19.28■□□□□ 0.68
SS18-206ENST00000577572 INTS5Q6P9B9 1019 aaKnown RBP19.28■□□□□ 0.68
SS18-206ENST00000577572 RIC3Q7Z5B4 369 aa19.28■□□□□ 0.68
SS18-206ENST00000577572 LINS1Q8NG48 757 aa19.28■□□□□ 0.68
SS18-206ENST00000577572 SRCIN1Q9C0H9 1055 aa19.28■□□□□ 0.68
SS18-206ENST00000577572 LY75O60449 1722 aa19.28■□□□□ 0.68
SS18-206ENST00000577572 A0A087WZG4 1122 aa19.27■□□□□ 0.68
SS18-206ENST00000577572 F6X3S4 739 aa19.27■□□□□ 0.68
SS18-206ENST00000577572 BEND3Q5T5X7 828 aa19.27■□□□□ 0.68
SS18-206ENST00000577572 SLC4A10Q6U841 1118 aa19.27■□□□□ 0.68
SS18-206ENST00000577572 METTL22Q9BUU2 404 aaPredicted RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms